Works matching IS 03051048 AND DT 2016 AND VI 44 AND IP 3

Results: 48

A novel high-throughput activity assay for the Trypanosoma brucei editosome enzyme REL1 and other RNA ligases.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1, doi. 10.1093/nar/gkv938

By:

Zimmermann, Stephan;
Hall, Laurence;
Riley, Sean;
Sørensen, Jesper;
Amaro, Rommie E.;
Schnaufer, Achim

Publication type:

Article

Shade avoidance 6 encodes an Arabidopsis flap endonuclease required for maintenance of genome integrity and development.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1271, doi. 10.1093/nar/gkv1474

By:

Yijuan Zhang;
Chunhong Wen;
Songbai Liu;
Li Zheng;
Binghui Shen;
Yi Tao

Publication type:

Article

Chromatin association of the SMC5/6 complex is dependent on binding of its NSE3 subunit to DNA.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1064, doi. 10.1093/nar/gkv1021

By:

Zabrady, Katerina;
Adamus, Marek;
Vondrova, Lucie;
Chunyan Liao;
Skoupilova, Hana;
Novakova, Marketa;
Jurcisinova, Lenka;
Alt, Aaron;
Oliver, Antony W.;
Lehmann, Alan R.;
Palecek, Jan J.

Publication type:

Article

Requirement for human Mps1/TTK in oxidative DNA damage repair and cell survival through MDM2 phosphorylation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1133, doi. 10.1093/nar/gkv1173

By:

Zheng-Cheng Yu;
Yi-Fu Huang;
Sheau-Yann Shieh

Publication type:

Article

ENmix: a novel background correction method for Illumina HumanMethylation450 BeadChip.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1, doi. 10.1093/nar/gkv907

By:

Zongli Xu;
Liang Niu;
Leping Li;
Taylor, Jack A.

Publication type:

Article

Alternative splicing creates two new architectures for human tyrosyl-tRNA synthetase.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1247, doi. 10.1093/nar/gkw002

By:

Zhiyi Wei;
Zhiwen Xu;
Xiaotian Liu;
Wing-Sze Lo;
Fei Ye;
Ching-Fun Lau;
Feng Wang;
Jie J. Zhou;
Nangle, Leslie A.;
Xiang-Lei Yang;
Mingjie Zhang;
Paul Schimmel

Publication type:

Article

Highly efficient homology-driven genome editing in human T cells by combining zinc-finger nuclease mRNA and AAV6 donor delivery.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1, doi. 10.1093/nar/gkv1121

By:

Jianbin Wang;
DeClercq, Joshua J.;
Hayward, Samuel B.;
Patrick Wai-Lun Li;
Shivak, David A.;
Gregory, Philip D.;
Lee, Gary;
Holmes, Michael C.

Publication type:

Article

Targeted cross-linking-mass spectrometry determines vicinal interactomes within heterogeneous RNP complexes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1354, doi. 10.1093/nar/gkv1366

By:

Trahan, Christian;
Oeffinger, Marlene

Publication type:

Article

SURVEY AND SUMMARY Readers of poly(ADP-ribose): designed to be fit for purpose.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 993, doi. 10.1093/nar/gkv1383

By:

Teloni, Federico;
Altmeyer, Matthias

Publication type:

Article

Coexistence of coil and globule domains within a single confined DNA chain.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1421, doi. 10.1093/nar/gkv1494

By:

Sung, Baeckkyoung;
Leforestier, Amélie;
Livolant, Françoise

Publication type:

Article

Ultra-fast local-haplotype variant calling using paired-end DNA-sequencing data reveals somatic mosaicism in tumor and normal blood samples.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1, doi. 10.1093/nar/gkv953

By:

Sengupta, Subhajit;
Gulukota, Kamalakar;
Zhu, Yitan;
Ober, Carole;
Naughton, Katherine;
Wentworth-Sheilds, William;
Yuan Ji

Publication type:

Article

Analysis of LexA binding sites and transcriptomics in response to genotoxic stress in Leptospira interrogans.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1179, doi. 10.1093/nar/gkv1536

By:

Schons-Fonseca, Luciane;
da Silva, Josefa B.;
Milanez, Juliana S.;
Domingos, Renan H.;
Smith, Janet L.;
Nakaya, Helder I.;
Grossman, Alan D.;
Ho, Paulo L.;
da Costa, Renata M. A.

Publication type:

Article

An autoregulatory enhancer controls mammary-specific STAT5 functions.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1052, doi. 10.1093/nar/gkv999

By:

Metser, Gil;
Ha Youn Shin;
Chaochen Wang;
Kyung Hyun Yoo;
Sumin Oh;
Villarino, Alejandro V.;
O'Shea, John J.;
Keunsoo Kang;
Hennighausen, Lothar

Publication type:

Article

Femtosecond near-infrared laser microirradiation reveals a crucial role for PARP signaling on factor assemblies at DNA damage sites.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1, doi. 10.1093/nar/gkv976

By:

Cruz, Gladys Mae Saquilabon;
Xiangduo Kong;
Silva, Bárbara Alcaraz;
Khatibzadeh, Nima;
Thai, Ryan;
Berns, Michael W.;
Kyoko Yokomori

Publication type:

Article

Detection of uracil within DNA using a sensitive labeling method for in vitro and cellular applications.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1, doi. 10.1093/nar/gkv977

By:

Róna, Gergely;
Scheer, Ildikó;
Nagy, Kinga;
Pálinkás, Hajnalka L.;
Tihanyi, Gergely;
Borsos, Máté;
Békési, Angéla;
Vèrtessy, Beáta G.

Publication type:

Article

HMGB1 interacts with XPA to facilitate the processing of DNA interstrand crosslinks in human cells.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1151, doi. 10.1093/nar/gkv1183

By:

Mukherjee, Anirban;
Vasquez, Karen M.

Publication type:

Article

Dual transcriptional-translational cascade permits cellular level tuneable expression control.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1, doi. 10.1093/nar/gkv912

By:

Morra, Rosa;
Shankar, Jayendra;
Robinson, Christopher J.;
Halliwell, Samantha;
Butler, Lisa;
Upton, Mathew;
Hay, Sam;
Micklefield, Jason;
Dixon, Neil

Publication type:

Article

tRNA is a new target for cleavage by a MazF toxin.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1256, doi. 10.1093/nar/gkv1370

By:

Schifano, Jason M;
Cruz, Jonathan W.;
Vvedenskaya, Irina O.;
Edifor, Regina;
Ming Ouyang;
Husson, Robert N.;
Nickels, Bryce E.;
Woychik, Nancy A.

Publication type:

Article

Human polypyrimidine tract-binding protein interacts with mitochondrial tRNA<sup>Thr</sup> in the cytosol.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1342, doi. 10.1093/nar/gkv1355

By:

Marnef, Aline;
Jády, Beáta E.;
Kiss, Tamás

Publication type:

Article

DTIE, a novel core promoter element that directs start site selection in TATA-less genes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1080, doi. 10.1093/nar/gkv1032

By:

Marbach-Bar, Nadav;
Bahat, Anat;
Ashkenazi, Shaked;
Golan-Mashiach, Michal;
Haimov, Ora;
Shwu-Yuan Wu;
Cheng-Ming Chiang;
Puzio-Kuter, Anna;
Hirshfield, Kim M.;
Levine, Arnold J.;
Dikstein, Rivka

Publication type:

Article

The role of MatP, ZapA and ZapB in chromosomal organization and dynamics in Escherichia coli.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1216, doi. 10.1093/nar/gkv1484

By:

Männik, Jaana;
Castillo, Daniel E.;
Da Yang;
Siopsis, George;
Männik, Jaan

Publication type:

Article

Selection-free gene repair after adenoviral vector transduction of designer nucleases: rescue of dystrophin synthesis in DMD muscle cell populations.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1449, doi. 10.1093/nar/gkv1540

By:

Maggio, Ignazio;
Stefanucci, Luca;
Janssen, Josephine M.;
Jin Liu;
Xiaoyu Chen;
Mouly, Vincent;
Gonçalves, Manuel A. F. V.

Publication type:

Article

Locked and proteolysis-based transcription activator-like effector (TALE) regulation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1471, doi. 10.1093/nar/gkv1541

By:

Lonzarić, Jan;
Lebar, Tina;
Majerle, Andreja;
Manček-Keber, Mateja;
Jerala, Roman

Publication type:

Article

Mechanism of activation of methyltransferases involved in translation by the Trm112 'hub' protein.

Published in:: Nucleic Acids Research, 2016, v. 44, n. 3, p. 1482, doi. 10.1093/nar/gkv1172
Publication type:: Article

Targeted single molecule mutation detection with massively parallel sequencing.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1, doi. 10.1093/nar/gkv915

By:

Gregory, Mark T.;
Bertout, Jessica A.;
Ericson, Nolan G.;
Taylor, Sean D.;
Mukherjee, Rithun;
Robins, Harlan S.;
Drescher, Charles W.;
Bielas, Jason H.

Publication type:

Article

Genome-wide CpG island methylation and intergenic demethylation propensities vary among different tumor sites.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1105, doi. 10.1093/nar/gkv1038

By:

Seung-Tae Lee;
Wiemels, Joseph L.

Publication type:

Article

The RNA-binding protein LARP1 is a post-transcriptional regulator of survival and tumorigenesis in ovarian cancer.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1227, doi. 10.1093/nar/gkv1515

By:

Hopkins, Thomas G.;
Mura, Manuela;
Al-Ashtal, Hiba A.;
Lahr, Roni M.;
Abd-Latip, Normala;
Sweeney, Katrina;
Haonan Lu;
Weir, Justin;
El-Bahrawy, Mona;
Steel, Jennifer H.;
Ghaem-Maghami, Sadaf;
Aboagye, Eric O.;
Berman, Andrea J.;
Blagden, Sarah P.

Publication type:

Article

The crystal structure of yeast mitochondrial ThrRS in complex with the canonical threonine tRNA.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1428, doi. 10.1093/nar/gkv1501

By:

Holman, Kaitlyn M.;
Jiang Wu;
Jiqiang Ling;
Simonović, Miljan

Publication type:

Article

RORα switches transcriptional mode of ERRγ that results in transcriptional repression of CYP2E1 under ethanol-exposure.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1095, doi. 10.1093/nar/gkv1034

By:

Yong-Hyun Han;
Don-Kyu Kim;
Tae-Young Na;
Na-Lee Ka;
Hueng-Sik Choi;
Mi-Ock Lee

Publication type:

Article

The expression of a viral microRNA is regulated by clustering to allow optimal B cell transformation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1326, doi. 10.1093/nar/gkv1330

By:

Haar, Janina;
Contrant, Maud;
Bernhardt, Katharina;
Feederle, Regina;
Diederichs, Sven;
Pfeffer, Sébastien;
Delecluse, Henri-Jacques

Publication type:

Article

An integrated systems biology approach identifies positive cofactor 4 as a factor that increases reprogramming efficiency.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1203, doi. 10.1093/nar/gkv1468

By:

Junghyun Jo;
Sohyun Hwang;
Hyung Joon Kim;
Soomin Hong;
Jeoung Eun Lee;
Sung-Geum Lee;
Baek, Ahmi;
Heonjong Han;
Jin Il Lee;
Insuk Lee;
Dong Ryul Lee

Publication type:

Article

Functional dissection of a plant Argonaute.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1384, doi. 10.1093/nar/gkv1371

By:

Fátyol, Károly;
Ludman, Márta;
Burgyán, József

Publication type:

Article

Dynamics and recognition within a protein-DNA complex: a molecular dynamics study of the SKN-1/DNA interaction.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1440, doi. 10.1093/nar/gkv1511

By:

Etheve, Loïc;
Martin, Juliette;
Lavery, Richard

Publication type:

Article

Lineage-specific variations in the trigger loop modulate RNA proofreading by bacterial RNA polymerases.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1298, doi. 10.1093/nar/gkv1521

By:

Esyunina, Daria;
Turtola, Matti;
Pupov, Danil;
Bass, Irina;
Klimašauskas, Saulius;
Belogurov, Georgiy;
Kulbachinskiy, Andrey

Publication type:

Article

Circular RNAs are long-lived and display only minimal early alterations in response to a growth factor.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1370, doi. 10.1093/nar/gkv1367

By:

Enuka, Yehoshua;
Lauriola, Mattia;
Feldman, Morris E.;
Sas-Chen, Aldema;
Ulitsky, Igor;
Yarden, Yosef

Publication type:

Article

The DNA polymerase III holoenzyme contains γ and is not a trimeric polymerase.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1285, doi. 10.1093/nar/gkv1510

By:

Dohrmann, Paul R.;
Correa, Raul;
Frisch, Ryan L.;
Rosenberg, Susan M.;
McHenry, Charles S.

Publication type:

Article

Structural requirements for protein-catalyzed annealing of U4 and U6 RNAs during di-snRNP assembly.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1398, doi. 10.1093/nar/gkv1374

By:

Didychuk, Allison L.;
Montemayor, Eric J.;
Brow, David A.;
Butcher, Samuel E.

Publication type:

Article

DNA-PK triggers histone ubiquitination and signaling in response to DNA double-strand breaks produced during the repair of transcription-blocking topoisomerase I lesions.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1161, doi. 10.1093/nar/gkv1196

By:

Cristini, Agnese;
Joon-Hyung Park;
Capranico, Giovanni;
Legube, Gäelle;
Favre, Gilles;
Sordet, Olivier

Publication type:

Article

NCLscan: accurate identification of non-co-linear transcripts (fusion, trans-splicing and circular RNA) with a good balance between sensitivity and precision.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1, doi. 10.1093/nar/gkv1013

By:

Trees-Juen Chuang;
Chan-Shuo Wu;
Chia-Ying Chen;
Li-Yuan Hung;
Tai-Wei Chiang;
Min-Yu Yang

Publication type:

Article

The use of modified and non-natural nucleotides provide unique insights into pro-mutagenic replication catalyzed by polymerase eta.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1022, doi. 10.1093/nar/gkv1509

By:

Jung-Suk Choi;
Dasari, Anvesh;
Peter Hu;
Benkovic, Stephen J.;
Berdis, Anthony J.

Publication type:

Article

Genome-wide profiling of nucleosome sensitivity and chromatin accessibility in Drosophila melanogaster.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1036, doi. 10.1093/nar/gkv978

By:

Chereji, Rǎzvan V.;
Tsung-Wai Kan;
Grudniewska, Magda K.;
Romashchenko, Alexander V.;
Berezikov, Eugene;
Zhimulev, Igor F.;
Guryev, Victor;
Morozov, Alexandre V.;
Moshkin, Yuri M.

Publication type:

Article

Integration of multi-omics data of a genome-reduced bacterium: Prevalence of post-transcriptional regulation and its correlation with protein abundances.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1192, doi. 10.1093/nar/gkw004

By:

Wei-Hua Chen;
van Noort, Vera;
Lluch-Senar, Maria;
Hennrich, Marco L.;
Wodke, Judith A. H.;
Yus, Eva;
Alibés, Andreu;
Roma, Guglielmo;
Mende, Daniel R.;
Pesavento, Christina;
Typas, Athanasios;
Gavin, Anne-Claude;
Serrano, Luis;
Bork, Peer

Publication type:

Article

miRVaS: a tool to predict the impact of genetic variants on miRNAs.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1, doi. 10.1093/nar/gkv921

By:

Cammaerts, Sophia;
Strazisar, Mojca;
Dierckx, Jenne;
Del Favero, Jurgen;
De Rijk, Peter

Publication type:

Article

Attomole quantification and global profile of RNA modifications: Epitranscriptome of human neural stem cells.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1, doi. 10.1093/nar/gkv971

By:

Basanta-Sanchez, Maria;
Temple, Sally;
Ansari, Suraiya A.;
D'Amico, Anna;
Agris, Paul F.

Publication type:

Article

ZFP57 recognizes multiple and closely spaced sequence motif variants to maintain repressive epigenetic marks in mouse embryonic stem cells.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1118, doi. 10.1093/nar/gkv1059

By:

Anvar, Zahra;
Cammisa, Marco;
Riso, Vincenzo;
Baglivo, Ilaria;
Kukreja, Harpreet;
Sparago, Angela;
Girardot, Michael;
Lad, Shraddha;
De Feis, Italia;
Cerrato, Flavia;
Angelini, Claudia;
Feil, Robert;
Pedone, Paolo V.;
Grimaldi, Giovanna;
Riccio, Andrea

Publication type:

Article

The structural diversity of artificial genetic polymers.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1007, doi. 10.1093/nar/gkv1472

By:

Anosova, Irina;
Kowal, Ewa A.;
Dunn, Matthew R.;
Chaput, John C.;
Van Horn, Wade D.;
Egli, Martin

Publication type:

Article

LOOP IIId of the HCV IRES is essential for the structural rearrangement of the 40S-HCV IRES complex.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1309, doi. 10.1093/nar/gkv1325

By:

Angulo, Jenniffer;
Ulryck, Nathalie;
Deforges, Jules;
Chamond, Nathalie;
Lopez-Lastra, Marcelo;
Masquida, Benoît;
Sargueil, Bruno

Publication type:

Article

Binding of transcription factor GabR to DNA requires recognition of DNA shape at a location distinct from its cognate binding site.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1411, doi. 10.1093/nar/gkv1466

By:

Al-Zyoud, Walid A.;
Hynson, Robert M. G.;
Ganuelas, Lorraine A.;
Duff, Anthony P.;
Baker, Matthew A. B.;
Stewart, Alastair G.;
Giannoulatou, Eleni;
Ho, Joshua W. K.;
Gaus, Katharina;
Liu, Dali;
Lee, Lawrence K.;
Böcking, Till

Publication type:

Article