Works matching IS 03051048 AND DT 2016 AND VI 44 AND IP 21

Results: 44

A highly specific sodium aptamer probed by 2-aminopurine for robust Na<sup>+</sup> sensing.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10377, doi. 10.1093/nar/gkw845

By:

Wenhu Zhou;
Jinsong Ding;
Juewen Liu

Publication type:

Article

Single-nucleus RNA-seq of differentiating human myoblasts reveals the extent of fate heterogeneity.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 1, doi. 10.1093/nar/gkw739

By:

Weihua Zeng;
Shan Jiang;
Xiangduo Kong;
El-Ali, Nicole;
Ball Jr, Alexander R.;
I-Hsing Ma, Christopher;
Naohiro Hashimoto;
Kyoko Yokomori;
Mortazavi, Ali

Publication type:

Article

Dissecting relative contributions of cis- and trans-determinants to nucleosome distribution by comparing Tetrahymena macronuclear and micronuclear chromatin.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10091, doi. 10.1093/nar/gkw684

By:

Jie Xiong;
Shan Gao;
Wen Dui;
Wentao Yang;
Xiao Chen;
Taverna, Sean D.;
Pearlman, Ronald E.;
Ashlock, Wendy;
Wei Miao;
Yifan Liu

Publication type:

Article

Differential cytokine sensitivities of STAT5-dependent enhancers rely on Stat5 autoregulation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10277, doi. 10.1093/nar/gkw844

By:

Willi, Michaela;
Kyung Hyun Yoo;
Chaochen Wang;
Trajanoski, Zlatko;
Hennighausen, Lothar

Publication type:

Article

Corrigendum.

Published in:: Nucleic Acids Research, 2016, v. 44, n. 21, p. 10526, doi. 10.1093/nar/gkw866
Publication type:: Article

The multifaceted influence of histone deacetylases on DNA damage signalling and DNA repair.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10017, doi. 10.1093/nar/gkw922

By:

Roos, Wynand Paul;
Krumm, Andrea

Publication type:

Article

PAtCh-Cap: input strategy for improving analysis of ChIP-exo data sets and beyond.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 1, doi. 10.1093/nar/gkw741

By:

Terooatea, Tommy W.;
Pozner, Amir;
Buck-Koehntop, Bethany A.

Publication type:

Article

Mechanistic determinants of MBNL activity.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10326, doi. 10.1093/nar/gkw915

By:

Sznajder, Łukasz J.;
Michalak, Michał;
Taylor, Katarzyna;
Cywoniuk, Piotr;
Kabza, Michał;
Wojtkowiak-Szlachcic, Agnieszka;
Matłoka, Magdalena;
Konieczny, Patryk;
Sobczak, Krzysztof

Publication type:

Article

Evaluating the impact of single nucleotide variants on transcription factor binding.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10106, doi. 10.1093/nar/gkw691

By:

Wenqiang Shi;
Fornes, Oriol;
Mathelier, Anthony;
Wasserman, Wyeth W.

Publication type:

Article

Global tRNA misacylation induced by anaerobiosis and antibiotic exposure broadly increases stress resistance in Escherichia coli.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10292, doi. 10.1093/nar/gkw856

By:

Schwartz, Michael H.;
Waldbauer, Jacob R.;
Lichun Zhang;
Tao Pan

Publication type:

Article

Molecular basis of RNA guanine-7 methyltransferase (RNMT) activation by RAM.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10423, doi. 10.1093/nar/gkw637

By:

Varshney, Dhaval;
Petit, Alain-Pierre;
Bueren-Calabuig, Juan A.;
Jansen, Chimed;
Fletcher, Dan A.;
Peggie, Mark;
Weidlich, Simone;
Scullion, Paul;
Pisliakov, Andrei V.;
Cowling, Victoria H.

Publication type:

Article

Single-molecule FRET reveals the pre-initiation and initiation conformations of influenza virus promoter RNA.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10304, doi. 10.1093/nar/gkw884

By:

Robb, Nicole C.;
te Velthuis, Aartjan J. W.;
Wieneke, Ralph;
Tampé, Robert;
Cordes, Thorben;
Fodor, Ervin;
Kapanidis, Achillefs N.

Publication type:

Article

Novel TDP2-ubiquitin interactions and their importance for the repair of topoisomerase II-mediated DNA damage.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10201, doi. 10.1093/nar/gkw719

By:

Timsi Rao;
Rui Gao;
Saeko Takada;
Al Abo, Muthana;
Xiang Chen;
Walters, Kylie J.;
Pommier, Yves;
Hideki Aihara

Publication type:

Article

DNA damage response curtails detrimental replication stress and chromosomal instability induced by the dietary carcinogen PhIP.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10259, doi. 10.1093/nar/gkw791

By:

Mimmler, Maximilian;
Peter, Simon;
Kraus, Alexander;
Stroh, Svenja;
Nikolova, Teodora;
Seiwert, Nina;
Hasselwander, Solveig;
Neitzel, Carina;
Haub, Jessica;
Monien, Bernhard H.;
Nicken, Petra;
Steinberg, Pablo;
Shay, Jerry W.;
Kaina, Bernd;
Fahrer, Jörg

Publication type:

Article

Dynamic peptides of human TPP1 fulfill diverse functions in telomere maintenance.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10467, doi. 10.1093/nar/gkw846

By:

Rajavel, Malligarjunan;
Orban, Tivadar;
Mengyuan Xu;
Hernandez-Sanchez, Wilnelly;
de la Fuente, Maria;
Palczewski, Krzysztof;
Taylor, Derek J.

Publication type:

Article

Silencing of cryptic prophages in Corynebacterium glutamicum.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10117, doi. 10.1093/nar/gkw692

By:

Pfeifer, Eugen;
Hünnefeld, Max;
Popa, Ovidiu;
Polen, Tino;
Kohlheyer, Dietrich;
Baumgart, Meike;
Frunzke, Julia

Publication type:

Article

Incision of damaged DNA in the presence of an impaired Smc5/6 complex imperils genome stability.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10216, doi. 10.1093/nar/gkw720

By:

Jie Peng;
Wenyi Feng

Publication type:

Article

An efficient system for selectively altering genetic information within mRNAs.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 1, doi. 10.1093/nar/gkw738

By:

Montiel-González, Maria Fernanda;
Vallecillo-Viejo, Isabel C.;
Rosenthal, Joshua J. C.

Publication type:

Article

Analyzing structure-function relationships of artificial and cancer-associated PARP1 variants by reconstituting TALEN-generated HeLa PARP1 knock-out cells.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10386, doi. 10.1093/nar/gkw859

By:

Rank, Lisa;
Veith, Sebastian;
Gwosch, Eva C.;
Demgenski, Janine;
Ganz, Magdalena;
Jongmans, Marjolijn C.;
Vogel, Christopher;
Fischbach, Arthur;
Buerger, Stefanie;
Fischer, Jan M. F.;
Zubel, Tabea;
Stier, Anna;
Renner, Christina;
Schmalz, Michael;
Beneke, Sascha;
Groettrup, Marcus;
Kuiper, Roland P.;
Bürkle, Alexander;
Ferrando-May, Elisa;
Mangerich, Aswin

Publication type:

Article

Genome-wide co-localization of active EGFR and downstream ERK pathway kinases mirrors mitogen-inducible RNA polymerase 2 genomic occupancy.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10150, doi. 10.1093/nar/gkw763

By:

Mikula, M.;
Skrzypczak, M.;
Goryca, K.;
Paczkowska, K.;
Ledwon, J. K.;
Statkiewicz, M.;
Kulecka, M.;
Grzelak, M.;
Dabrowska, M.;
Kuklinska, U.;
Karczmarski, J.;
Rumienczyk, I.;
Jastrzebski, K.;
Miaczynska, M.;
Ginalski, K.;
Bomsztyk, K.;
Ostrowski, J.

Publication type:

Article

Insights into the regulation of small RNA expression: SarA represses the expression of two sRNAs in Staphylococcus aureus.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10186, doi. 10.1093/nar/gkw777

By:

Mauro, Tony;
Rouillon, Astrid;
Felden, Brice

Publication type:

Article

Analysis of C. elegans muscle transcriptome using trans-splicing-based RNA tagging (SRT).

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 1, doi. 10.1093/nar/gkw734

By:

Xiaopeng Ma;
Ge Zhan;
Sleumer, Monica C.;
Siyu Chen;
Weihong Liu;
Zhang, Michael Q.;
Xiao Liu

Publication type:

Article

Crystal structure of endonuclease G in complex with DNA reveals how it nonspecifically degrades DNA as a homodimer.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10480, doi. 10.1093/nar/gkw931

By:

Lin, Jason L. J.;
Chyuan-Chuan Wu;
Wei-Zen Yang;
Yuan, Hanna S.

Publication type:

Article

Genome-wide identification and characterisation of human DNA replication origins by initiation site sequencing (ini-seq).

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10230, doi. 10.1093/nar/gkw760

By:

Langley, Alexander R.;
Gräf, Stefan;
Smith, James C.;
Krude, Torsten

Publication type:

Article

Localized structural frustration for evaluating the impact of sequence variants.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10062, doi. 10.1093/nar/gkw927

By:

Kumar, Sushant;
Clarke, Declan;
Gerstein, Mark

Publication type:

Article

Structure of the 70S ribosome from human pathogen Staphylococcus aureus.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10491, doi. 10.1093/nar/gkw933

By:

Khusainov, Iskander;
Vicens, Quentin;
Bochler, Anthony;
Grosse, François;
Myasnikov, Alexander;
Ménétret, Jean-François;
Chicher, Johana;
Marzi, Stefano;
Romby, Pascale;
Yusupova, Gulnara;
Yusupov, Marat;
Hashem, Yaser

Publication type:

Article

Interdependence of PRC1 and PRC2 for recruitment to Polycomb Response Elements.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10132, doi. 10.1093/nar/gkw701

By:

Kahn, Tatyana G.;
Dorafshan, Eshagh;
Schultheis, Dorothea;
Zare, Aman;
Stenberg, Per;
Reim, Ingolf;
Pirrotta, Vincenzo;
Schwartz, Yuri B.

Publication type:

Article

Codon usage is less optimized in eukaryotic gene segments encoding intrinsically disordered regions than in those encoding structural domains.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10051, doi. 10.1093/nar/gkw899

By:

Keiichi Homma;
Tamotsu Noguchi;
Satoshi Fukuchi

Publication type:

Article

Insightful directed evolution of Escherichia coli quorum sensing promoter region of the lsrACDBFG operon: a tool for synthetic biology systems and protein expression.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10515, doi. 10.1093/nar/gkw981

By:

Hauk, Pricila;
Stephens, Kristina;
Mckay, Ryan;
Virgile, Chelsea Ryan;
Ueda, Hana;
Ostermeier, Marc;
Kyoung-Seok Ryu;
Sintim, Herman O.;
Bentley, William E.

Publication type:

Article

Distinctive Klf4 mutants determine preference for DNA methylation status.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10177, doi. 10.1093/nar/gkw774

By:

Hideharu Hashimoto;
Dongxue Wang;
Steves, Alyse N.;
Peng Jin;
Blumenthal, Robert M.;
Xing Zhang;
Xiaodong Cheng

Publication type:

Article

Denys-Drash syndrome associated WT1 glutamine 369 mutants have altered sequence-preferences and altered responses to epigenetic modifications.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10165, doi. 10.1093/nar/gkw766

By:

Hideharu Hashimoto;
Xing Zhang;
Yu Zheng;
Wilson, Geoffrey G.;
Xiaodong Cheng

Publication type:

Article

DNA gyrase with a single catalytic tyrosine can catalyze DNA supercoiling by a nicking-closing mechanism.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10354, doi. 10.1093/nar/gkw740

By:

Gubaev, Airat;
Weidlich, Daniela;
Klostermeier, Dagmar

Publication type:

Article

The target spectrum of SdsR small RNA in Salmonella.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10406, doi. 10.1093/nar/gkw632

By:

Fröhlich, Kathrin S.;
Haneke, Katharina;
Papenfort, Kai;
Vogel, Jörg

Publication type:

Article

Cytoplasmic Drosha activity generated by alternative splicing.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10454, doi. 10.1093/nar/gkw668

By:

Lisheng Dai;
Chen, Kevin;
Youngren, Brenda;
Kulina, Julia;
Acong Yang;
Zhengyu Guo;
Jin Li;
Peng Yu;
Shuo Gu

Publication type:

Article

Structural basis of damage recognition by thymine DNA glycosylase: Key roles for N-terminal residues.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10248, doi. 10.1093/nar/gkw768

By:

Coey, Christopher T.;
Malik, Shuja S.;
Pidugu, Lakshmi S.;
Varney, Kristen M.;
Pozharski, Edwin;
Drohat, Alexander C.

Publication type:

Article

Molecular mechanism of divalent-metal-induced activation of NS3 helicase and insights into Zika virus inhibitor design.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10505, doi. 10.1093/nar/gkw941

By:

Xiaocong Cao;
Yajuan Li;
Xiangyu Jin;
Yuelong Li;
Feng Guo;
Tengchuan Jin

Publication type:

Article

The landscape of microbial phenotypic traits and associated genes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10074, doi. 10.1093/nar/gkw964

By:

Brbić, Maria;
Piškorec, Matija;
Vidulin, Vedrana;
Kriško, Anita;
Šmuc, Tomislav;
Supek, Fran

Publication type:

Article

Modification of orthogonal tRNAs: unexpected consequences for sense codon reassignment.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10042, doi. 10.1093/nar/gkw948

By:

Biddle, Wil;
Schmitt, Margaret A.;
Fisk, John D.

Publication type:

Article

Light-induced oxidation of the telomeric G4 DNA in complex with Zn(II) tetracarboxymethyl porphyrin.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10031, doi. 10.1093/nar/gkw947

By:

Beniaminov, Artemy D.;
Novikov, Roman A.;
Mamaeva, Olga K.;
Mitkevich, Vladimir A.;
Smirnov, Igor P.;
Livshits, Mikhail A.;
Shchyolkina, Anna K.;
Kaluzhny, Dmitry N.

Publication type:

Article

Casposon integration shows strong target site preference and recapitulates protospacer integration by CRISPR-Cas systems.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10367, doi. 10.1093/nar/gkw821

By:

Béguin, Pierre;
Charpin, Nicole;
Koonin, Eugene V.;
Forterre, Patrick;
Krupovic, Mart

Publication type:

Article

Single molecule tracking of Ace1p in Saccharomyces cerevisiae defines a characteristic residence time for non-specific interactions of transcription factors with chromatin.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 1, doi. 10.1093/nar/gkw744

By:

Ball, David A.;
Mehta, Gunjan D.;
Salomon-Kent, Ronit;
Mazza, Davide;
Tatsuya Morisaki;
Mueller, Florian;
McNally, James G.;
Karpova, Tatiana S.

Publication type:

Article

Visualization of DNA G-quadruplexes in herpes simplex virus 1-infected cells.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10343, doi. 10.1093/nar/gkw968

By:

Artusi, Sara;
Perrone, Rosalba;
Lago, Sara;
Raffa, Paolo;
Di Iorio, Enzo;
Palù, Giorgio;
Richter, Sara N.

Publication type:

Article

The dual role of DksA protein in the regulation of Escherichia coli pArgX promoter.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10316, doi. 10.1093/nar/gkw912

By:

Łyżeń, Robert;
Maitra, Amarnath;
Milewska, Klaudia;
Kochanowska-Łyżeń, Maja;
Hernandez, V. James;
Szalewska-Pałasz, Agnieszka

Publication type:

Article

Perlman syndrome nuclease DIS3L2 controls cytoplasmic non-coding RNAs and provides surveillance pathway for maturing snRNAs.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10437, doi. 10.1093/nar/gkw649

By:

Łabno, Anna;
Warkocki, Zbigniew;
Kuliński, Tomasz;
Krawczyk, Paweł Szczepan;
Bijata, Krystian;
Tomecki, Rafał;
Dziembowski, Andrzej

Publication type:

Article