Works matching IS 03051048 AND DT 2016 AND VI 44 AND IP 20

Results: 44

Protein-DNA interfaces: a molecular dynamics analysis of time-dependent recognition processes for three transcription factors.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9990, doi. 10.1093/nar/gkw841

By:

Etheve, Loïc;
Martin, Juliette;
Lavery, Richard

Publication type:

Article

Cellular and molecular phenotypes depending upon the RNA repair system RtcAB of Escherichia coli.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9933, doi. 10.1093/nar/gkw628

By:

Engl, Christoph;
Schaefer, Jorrit;
Kotta-Loizou, Ioly;
Buck, Martin

Publication type:

Article

Engineering of temperature- and light-switchable Cas9 variants.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 10003, doi. 10.1093/nar/gkw930

By:

Richter, Florian;
Fonfara, Ines;
Bouazza, Boris;
Schumacher, Charlotte Helene;
Bratovič, Majda;
Charpentier, Emmanuelle;
Möglich, Andreas

Publication type:

Article

hLARP7 C-terminal domain contains an xRRM that binds the 3′ hairpin of 7SK RNA.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9977, doi. 10.1093/nar/gkw833

By:

Eichhorn, Catherine D.;
Chug, Rahul;
Feigon, Juli

Publication type:

Article

Molecular basis of cobalamin-dependent RNA modification.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9965, doi. 10.1093/nar/gkw806

By:

Dowling, Daniel P.;
Miles, Zachary D.;
Köhrer, Caroline;
Maiocco, Stephanie J.;
Elliott, Sean J.;
Bandarian, Vahe;
Drennan, Catherine L.

Publication type:

Article

Structural dynamics control the MicroRNA maturation pathway.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9956, doi. 10.1093/nar/gkw793

By:

Dallaire, Paul;
Huiping Tan;
Szulwach, Keith;
Ma, Christopher;
Peng Jin;
Major, François

Publication type:

Article

S6K2-mediated regulation of TRBP as a determinant of miRNA expression in human primary lymphatic endothelial cells.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9942, doi. 10.1093/nar/gkw631

By:

Warner, Matthew J.;
Bridge, Katherine S.;
Hewitson, James P.;
Hodgkinson, Michael R.;
Heyam, Alex;
Massa, Bailey C.;
Haslam, Jessica C.;
Chatzifrangkeskou, Maria;
Evans, Gareth J. O.;
Plevin, Michael J.;
Sharp, Tyson V.;
Lagos, Dimitris

Publication type:

Article

Binding properties of YjeQ (RsgA), RbfA, RimM and Era to assembly intermediates of the 30S subunit.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9918, doi. 10.1093/nar/gkw613

By:

Thurlow, Brett;
Davis, Joseph H.;
Leong, Vivian;
Moraes, Trevor F.;
Williamson, James R.;
Ortega, Joaquin

Publication type:

Article

PCBP2 enables the cadicivirus IRES to exploit the function of a conserved GRNA tetraloop to enhance ribosomal initiation complex formation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9902, doi. 10.1093/nar/gkw609

By:

Asnani, Mukta;
Pestova, Tatyana V.;
Hellen, Christopher U. T.

Publication type:

Article

The functional requirement of two structural domains within telomerase RNA emerged early in eukaryotes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9891, doi. 10.1093/nar/gkw605

By:

Podlevsky, Joshua D.;
Yang Li;
Chen, Julian J.-L.

Publication type:

Article

5-methylcytosine-sensitive variants of Thermococcus kodakaraensis DNA polymerase.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9881, doi. 10.1093/nar/gkw812

By:

Huber, Claudia;
von Watzdorf, Janina;
Marx, Andreas

Publication type:

Article

Probing RNA recognition by human ADAR2 using a high-throughput mutagenesis method.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9872, doi. 10.1093/nar/gkw799

By:

Yuru Wang;
Beal, Peter A.

Publication type:

Article

VapCs of Mycobacterium tuberculosis cleave RNAs essential for translation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9860, doi. 10.1093/nar/gkw781

By:

Winther, Kristoffer;
Tree, Jai J.;
Tollervey, David;
Gerdes, Kenn

Publication type:

Article

Chtop (Chromatin target of Prmt1) auto-regulates its expression level via intron retention and nonsense-mediated decay of its own mRNA.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9847, doi. 10.1093/nar/gkw831

By:

Keiichi Izumikawa;
Harunori Yoshikawa;
Hideaki Ishikawa;
Yuko Nobe;
Yoshio Yamauchi;
Philipsen, Sjaak;
Simpson, Richard J.;
Toshiaki Isobe;
Nobuhiro Takahashi

Publication type:

Article

A small stem-loop structure of the Ebola virus trailer is essential for replication and interacts with heat-shock protein A8.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9831, doi. 10.1093/nar/gkw825

By:

Sztuba-Solinska, Joanna;
Diaz, Larissa;
Kumar, Mia R.;
Kolb, Gäelle;
Wiley, Michael R.;
Jozwick, Lucas;
Kuhn, Jens H.;
Palacios, Gustavo;
Radoshitzky, Sheli R.;
Le Grice, Stuart F. J.;
Johnson, Reed F.

Publication type:

Article

Evolution of Arabidopsis protection of telomeres 1 alters nucleic acid recognition and telomerase regulation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9821, doi. 10.1093/nar/gkw807

By:

Arora, Amit;
Beilstein, Mark A.;
Shippen, Dorothy E.

Publication type:

Article

Human AATF/Che-1 forms a nucleolar protein complex with NGDN and NOL10 required for 40S ribosomal subunit synthesis.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9803, doi. 10.1093/nar/gkw790

By:

Bammert, Lukas;
Jonas, Stefanie;
Ungricht, Rosemarie;
Kutay, Ulrike

Publication type:

Article

Disclosing early steps of protein-primed genome replication of the Gram-positive tectivirus Bam35.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9733, doi. 10.1093/nar/gkw673

By:

Berjón-Otero, Mónica;
Villar, Laurentino;
Salas, Margarita;
Redrejo-Rodríguez, Modesto

Publication type:

Article

Fluorescent sensors of PARP-1 structural dynamics and allosteric regulation in response to DNA damage.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9771, doi. 10.1093/nar/gkw710

By:

Steffen, Jamin D.;
McCauley, Michael M.;
Pascal, John M.

Publication type:

Article

A programmable Cas9-serine recombinase fusion protein that operates on DNA sequences in mammalian cells.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9758, doi. 10.1093/nar/gkw707

By:

Chaikind, Brian;
Bessen, Jeffrey L.;
Thompson, David B.;
Hu, Johnny H.;
Liu, David R.

Publication type:

Article

An aromatic-rich loop couples DNA binding and ATP hydrolysis in the PriA DNA helicase.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9745, doi. 10.1093/nar/gkw690

By:

Windgassen, Tricia A.;
Keck, James L.

Publication type:

Article

Trans-acting GC-rich non-coding RNA at var expression site modulates gene counting in malaria parasite.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9710, doi. 10.1093/nar/gkw664

By:

Guizetti, Julien;
Barcons-Simon, Anna;
Scherf, Artur

Publication type:

Article

Exposure to the widely used herbicide atrazine results in deregulation of global tissue-specific RNA transcription in the third generation and is associated with a global decrease of histone trimethylation in mice.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9784, doi. 10.1093/nar/gkw840

By:

Chunxiang Hao;
Gely-Pernot, Aurore;
Kervarrec, Christine;
Boudjema, Melissa;
Becker, Emmanuelle;
Khil, Pavel;
Tevosian, Sergei;
Jégou, Bernard;
Smagulova, Fatima

Publication type:

Article

RAG1 targeting in the genome is dominated by chromatin interactions mediated by the non-core regions of RAG1 and RAG2.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9624, doi. 10.1093/nar/gkw633

By:

Maman, Yaakov;
Teng, Grace;
Seth, Rashu;
Kleinstein, Steven H.;
Schatz, David G.

Publication type:

Article

Function-driven discovery of disease genes in zebrafish using an integrated genomics big data resource.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9611, doi. 10.1093/nar/gkw897

By:

Hongseok Shim;
Ji Hyun Kim;
Chan Yeong Kim;
Sohyun Hwang;
Hyojin Kim;
Sunmo Yang;
Ji Eun Lee;
Insuk Lee

Publication type:

Article

The C/ebp-Atf response element (CARE) location reveals two distinct Atf4-dependent, elongation-mediated mechanisms for transcriptional induction of aminoacyl-tRNA synthetase genes in response to amino acid limitation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9719, doi. 10.1093/nar/gkw667

By:

Jixiu Shan;
Fan Zhang;
Sharkey, Jason;
Tang, Tiffany A.;
Örd, Tönis;
Kilberg, Michael S.

Publication type:

Article

Inter-sigmulon communication through topological promoter coupling.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9638, doi. 10.1093/nar/gkw639

By:

del Peso Santos, Teresa;
Shingler, Victoria

Publication type:

Article

eIF2β is critical for eIF5-mediated GDP-dissociation inhibitor activity and translational control.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9698, doi. 10.1093/nar/gkw657

By:

Jennings, Martin D.;
Kershaw, Christopher J.;
White, Christopher;
Hoyle, Danielle;
Richardson, Jonathan P.;
Costello, Joseph L.;
Donaldson, Ian J.;
Yu Zhou;
Pavitt, Graham D.

Publication type:

Article

H2B ubiquitination regulates meiotic recombination by promoting chromatin relaxation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9681, doi. 10.1093/nar/gkw652

By:

Zhiliang Xu;
Zhenhua Song;
Guoping Li;
Huayu Tu;
Weixiao Liu;
Yujiao Liu;
Pan Wang;
Yuanting Wang;
Xiuhong Cui;
Chao Liu;
Yongliang Shang;
de Rooij, Dirk G.;
Fei Gao;
Wei Li

Publication type:

Article

Tunable regulation of CREB DNA binding activity couples genotoxic stress response and metabolism.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9667, doi. 10.1093/nar/gkw643

By:

Sang Hwa Kim;
Trinh, Anthony T.;
Larsen, Michele Campaigne;
Mastrocola, Adam S.;
Jefcoate, Colin R.;
Bushel, Pierre R.;
Tibbetts, Randal S.

Publication type:

Article

Unexpected properties of sRNA promoters allow feedback control via regulation of a two-component system.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9650, doi. 10.1093/nar/gkw642

By:

Brosse, Anaïs;
Korobeinikova, Anna;
Gottesman, Susan;
Guillier, Maude

Publication type:

Article

Finding approximate gene clusters with GECKO 3.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9600, doi. 10.1093/nar/gkw843

By:

Winter, Sascha;
Jahn, Katharina;
Wehner, Stefanie;
Kuchenbecker, Leon;
Marz, Manja;
Stoye, Jens;
Böcker, Sebastian

Publication type:

Article

Global deformation facilitates flipping of damaged 8-oxo-guanine and guanine in DNA.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9591, doi. 10.1093/nar/gkw827

By:

La Rosa, Giuseppe;
Zacharias, Martin

Publication type:

Article

Cap analogs modified with 1,2-dithiodiphosphate moiety protect mRNA from decapping and enhance its translational potential.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9578, doi. 10.1093/nar/gkw896

By:

Strenkowska, Malwina;
Grzela, Renata;
Majewski, Maciej;
Wnek, Katarzyna;
Kowalska, Joanna;
Lukaszewicz, Maciej;
Zuberek, Joanna;
Darzynkiewicz, Edward;
Kuhn, Andreas N.;
Sahin, Ugur;
Jemielity, Jacek

Publication type:

Article

Laboratory evolution of artificially expanded DNA gives redesignable aptamers that target the toxic form of anthrax protective antigen.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9565, doi. 10.1093/nar/gkw890

By:

Biondi, Elisa;
Lane, Joshua D.;
Das, Debasis;
Dasgupta, Saurja;
Piccirilli, Joseph A.;
Shuichi Hoshika;
Bradley, Kevin M.;
Krantz, Bryan A.;
Benner, Steven A.

Publication type:

Article

Guide RNA engineering for versatile Cas9 functionality.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9555, doi. 10.1093/nar/gkw908

By:

Nowak, Chance M.;
Lawson, Seth;
Zerez, Megan;
Bleris, Leonidas

Publication type:

Article

Distribution and effects of amino acid changes in drug-resistant α and β herpesviruses DNA polymerase.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9530, doi. 10.1093/nar/gkw875

By:

Topalis, D.;
Gillemot, S.;
Snoeck, R.;
Andrei, G.

Publication type:

Article

Antisense oligonucleotides delivered to the amniotic cavity in utero modulate gene expression in the postnatal mouse.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9519, doi. 10.1093/nar/gkw867

By:

Depreux, Frederic F.;
Lingyan Wang;
Han Jiang;
Jodelka, Francine M.;
Rosencrans, Robert F.;
Rigo, Frank;
Lentz, Jennifer J.;
Brigande, John V.;
Hastings, Michelle L.

Publication type:

Article

Real time determination of bacterial in vivo ribosome translation elongation speed based on LacZα complementation system.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 1, doi. 10.1093/nar/gkw698

By:

Manlu Zhu;
Xiongfeng Dai;
Yi-Ping Wang

Publication type:

Article

Identify bilayer modules via pseudo-3D clustering: applications to miRNA-gene bilayer networks.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 1, doi. 10.1093/nar/gkw679

By:

Yungang Xu;
Maozu Guo;
Xiaoyan Liu;
Chunyu Wang;
Yang Liu;
Guojun Liu

Publication type:

Article

NanoStringDiff: a novel statistical method for differential expression analysis based on NanoString nCounter data.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 1, doi. 10.1093/nar/gkw677

By:

Hong Wang;
Horbinski, Craig;
Hao Wu;
Yinxing Liu;
Shaoyi Sheng;
Jinpeng Liu;
Weiss, Heidi;
Stromberg, Arnold J.;
Chi Wang

Publication type:

Article

Enhanced copy number variants detection from whole-exome sequencing data using EXCAVATOR2.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 1, doi. 10.1093/nar/gkw695

By:

D'Aurizio, Romina;
Pippucci, Tommaso;
Tattini, Lorenzo;
Giusti, Betti;
Pellegrini, Marco;
Magi, Alberto

Publication type:

Article

Corrigendum.

Published in:: Nucleic Acids Research, 2016, v. 44, n. 20, p. 1, doi. 10.1093/nar/gkw824
Publication type:: Article

Differential peak calling of ChIP-seq signals with replicates with THOR.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 1, doi. 10.1093/nar/gkw680

By:

Allhoff, Manuel;
Seré, Kristin;
Pires, Juliana F.;
Zenke, Martin;
Costa, Ivan G.

Publication type:

Article