Works matching IS 03051048 AND DT 2016 AND VI 44 AND IP 2

Results: 50

Precision methylome characterization of Mycobacterium tuberculosis complex (MTBC) using PacBio single-molecule real-time (SMRT) technology.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 730, doi. 10.1093/nar/gkv1498

By:

Lingxiang Zhu;
Jun Zhong;
Xinmiao Jia;
Guan Liu;
Yu Kang;
Mengxing Dong;
Xiuli Zhang;
Qian Li;
Liya Yue;
Cuidan Li;
Jing Fu;
Jingfa Xiao;
Jiangwei Yan;
Bing Zhang;
Meng Lei;
Suting Chen;
Lingna Lv;
Baoli Zhu;
Hairong Huang;
Fei Chen

Publication type:

Article

A computational method for studying the relation between alternative splicing and DNA methylation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 1, doi. 10.1093/nar/gkv906

By:

Zejun Zheng;
Xiaona Wei;
Hildebrandt, Andreas;
Schmidt, Bertil

Publication type:

Article

Cold-inducible RNA-binding protein CIRP/hnRNP A18 regulates telomerase activity in a temperature-dependent manner.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 761, doi. 10.1093/nar/gkv1465

By:

Youwei Zhang;
Yangxiu Wu;
Pingsu Mao;
Feng Li;
Xin Han;
Yi Zhang;
Shuai Jiang;
Yuxi Chen;
Junjiu Huang;
Dan Liu;
Yong Zhao;
Wenbin Ma;
Zhou Songyang

Publication type:

Article

Reduced cohesin destabilizes high-level gene amplification by disrupting pre-replication complex bindings in human cancers with chromosomal instability.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 558, doi. 10.1093/nar/gkv933

By:

Jiyeon Yun;
Sang-Hyun Song;
Jee-Youn Kang;
Jinah Park;
Hwang-Phill Kim;
Sae-Won Han;
Tae-You Kim

Publication type:

Article

The role of topoisomerase I in suppressing genome instability associated with a highly transcribed guanine-rich sequence is not restricted to preventing RNA:DNA hybrid accumulation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 718, doi. 10.1093/nar/gkv1152

By:

Yadav, Puja;
Owiti, Norah;
Nayun Kim

Publication type:

Article

Structure and stereochemistry of the base excision repair glycosylase MutY reveal a mechanism similar to retaining glycosidases.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 801, doi. 10.1093/nar/gkv1469

By:

Woods, Ryan D.;
O'Shea, Valerie L.;
Chu, Aurea;
Sheng Cao;
Richards, Jody L.;
Horvath, Martin P.;
David, Sheila S.

Publication type:

Article

Recombinational repair of radiation-induced double-strand breaks occurs in the absence of extensive resection.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 695, doi. 10.1093/nar/gkv1109

By:

Westmoreland, James W.;
Resnick, Michael A.

Publication type:

Article

Simultaneous characterization of cellular RNA structure and function with in-cell SHAPE-Seq.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 1, doi. 10.1093/nar/gkv879

By:

Watters, Kyle E.;
Abbott, Timothy R.;
Lucks, Julius B.

Publication type:

Article

A novel RNA-binding mode of the YTH domain reveals the mechanism for recognition of determinant of selective removal by Mmi1.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 969, doi. 10.1093/nar/gkv1382

By:

Chongyuan Wang;
Yuwei Zhu;
Hongyu Bao;
Yiyang Jiang;
Chao Xu;
Jihui Wu;
Yunyu Shi

Publication type:

Article

Structural and functional insights into tRNA binding and adenosine N1-methylation by an archaeal Trm10 homologue.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 940, doi. 10.1093/nar/gkv1369

By:

Van Laer, Bart;
Roovers, Martine;
Wauters, Lina;
Kasprzak, Joanna M.;
Dyzma, Michal;
Deyaert, Egon;
Singh, Ranjan Kumar;
Feller, André;
Bujnicki, Janusz M.;
Droogmans, Louis;
Versées, Wim

Publication type:

Article

Sizing femtogram amounts of dsDNA by single-molecule counting.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 1, doi. 10.1093/nar/gkv904

By:

Torchinsky, Dmitry;
Ebenstein, Yuval

Publication type:

Article

Concerted removal of the Erb1--Ytm1 complex in ribosome biogenesis relies on an elaborate interface.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 926, doi. 10.1093/nar/gkv1365

By:

Thoms, Matthias;
Ahmed, Yasar Luqman;
Maddi, Karthik;
Hurt, Ed;
Sinning, Irmgard

Publication type:

Article

The autoinhibitory CARD2-Hel2i Interface of RIG-I governs RNA selection.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 896, doi. 10.1093/nar/gkv1299

By:

Ramanathan, Anand;
Devarkar, Swapnil C.;
Fuguo Jiang;
Miller, Matthew T.;
Khan, Abdul G.;
Marcotrigiano, Joseph;
Patel, Smita S.

Publication type:

Article

Periodic-shRNA molecules are capable of gene silencing, cytotoxicity and innate immune activation in cancer cells.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 545, doi. 10.1093/nar/gkv1488

By:

Shopsowitz, Kevin E.;
Wu, Connie;
Liu, Gina;
Dreaden, Erik C.;
Hammond, Paula T.

Publication type:

Article

Biogenesis and growth phase-dependent alteration of 5-methoxycarbonylmethoxyuridine in tRNA anticodons.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 509, doi. 10.1093/nar/gkv1470

By:

Yusuke Sakai;
Kenjyo Miyauchi;
Satoshi Kimura;
Tsutomu Suzuki

Publication type:

Article

Different duplex/quadruplex junctions determine the properties of anti-thrombin aptamers with mixed folding.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 983, doi. 10.1093/nar/gkv1384

By:

Krauss, Irene Russo;
Spiridonova, Vera;
Pica, Andrea;
Napolitano, Valeria;
Sica, Filomena

Publication type:

Article

Corrigendum.

Published in:: Nucleic Acids Research, 2016, v. 44, n. 2, p. 992, doi. 10.1093/nar/gkv1125
Publication type:: Article

Impaired TIP60-mediated H4K16 acetylation accounts for the aberrant chromatin accumulation of 53BP1 and RAP80 in Fanconi anemia pathway-deficient cells.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 648, doi. 10.1093/nar/gkv1019

By:

Renaud, Emilie;
Barascu, Aurelia;
Rosselli, Filippo

Publication type:

Article

A versatile toolbox for posttranscriptional chemical labeling and imaging of RNA.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 1, doi. 10.1093/nar/gkv903

By:

Sawant, Anupam A.;
Tanpure, Arun A.;
Mukherjee, Progya P.;
Athavale, Soumitra;
Kelkar, Ashwin;
Galande, Sanjeev;
Srivatsan, Seergazhi G.

Publication type:

Article

KRAS promoter oligonucleotide with decoy activity dimerizes into a unique topology consisting of two G-quadruplex units.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 917, doi. 10.1093/nar/gkv1359

By:

Podbevšek, Peter;
Plavec, Janez

Publication type:

Article

A dynamic intron retention program enriched in RNA processing genes regulates gene expression during terminal erythropoiesis.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 838, doi. 10.1093/nar/gkv1168

By:

Pimentel, Harold;
Parra, Marilyn;
Gee, Sherry L.;
Mohandas, Narla;
Pachter, Lior;
Conboy, John G.

Publication type:

Article

The activity of CouR, a MarR family transcriptional regulator, is modulated through a novel molecular mechanism.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 595, doi. 10.1093/nar/gkv955

By:

Hiroshi Otani;
Stogios, Peter J.;
Xiaohui Xu;
Nocek, Boguslaw;
Shu-Nan Li;
Savchenko, Alexei;
Eltis, Lindsay D.

Publication type:

Article

Temporal dynamics of methyltransferase and restriction endonuclease accumulation in individual cells after introducing a restriction-modification system.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 790, doi. 10.1093/nar/gkv1490

By:

Morozova, Natalia;
Sabantsev, Anton;
Bogdanova, Ekaterina;
Fedorova, Yana;
Maikova, Anna;
Vedyaykin, Alexey;
Rodic, Andjela;
Djordjevic, Marko;
Khodorkovskii, Mikhail;
Severinov, Konstantin

Publication type:

Article

Stability of blocked replication forks in vivo.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 657, doi. 10.1093/nar/gkv1079

By:

Mettrick, Karla A.;
Grainge, Ian

Publication type:

Article

SUVH1, a Su(var)3-9 family member, promotes the expression of genes targeted by DNA methylation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 608, doi. 10.1093/nar/gkv958

By:

Shaofang Li;
Lin Liu;
Shengben Li;
Lei Gao;
Yuanyuan Zhao;
Yun Ju Kim;
Xuemei Chen

Publication type:

Article

CRISPR-CAS9 D10A nickase target-specific fluorescent labeling of double strand DNA for whole genome mapping and structural variation analysis.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 1, doi. 10.1093/nar/gkv878

By:

McCaffrey, Jennifer;
Sibert, Justin;
Bin Zhang;
Yonggang Zhang;
Wenhui Hu;
Riethman, Harold;
Ming Xiao

Publication type:

Article

Nuclear pyruvate kinase M2 complex serves as a transcriptional coactivator of arylhydrocarbon receptor.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 636, doi. 10.1093/nar/gkv967

By:

Shun Matsuda;
Jun Adachi;
Masaru Ihara;
Nobuhiro Tanuma;
Hiroshi Shima;
Akira Kakizuka;
Masae Ikura;
Tsuyoshi Ikura;
Tomonari Matsuda

Publication type:

Article

piggyBac transposons expressing full-length human dystrophin enable genetic correction of dystrophic mesoangioblasts.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 744, doi. 10.1093/nar/gkv1464

By:

Loperfido, Mariana;
Jarmin, Susan;
Dastidar, Sumitava;
Di Matteo, Mario;
Perini, Ilaria;
Moore, Marc;
Nair, Nisha;
Samara-Kuko, Ermira;
Athanasopoulos, Takis;
Saverio Tedesco, Francesco;
Dickson, George;
Sampaolesi, Maurilio;
VandenDriessche, Thierry;
Chuah, Marinee K.

Publication type:

Article

A high-throughput assay for the comprehensive profiling of DNA ligase fidelity.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 1, doi. 10.1093/nar/gkv898

By:

Lohman, Gregory J. S.;
Bauer, Robert J.;
Nichols, Nicole M.;
Mazzola, Laurie;
Bybee, Joanna;
Rivizzigno, Danielle;
Cantin, Elizabeth;
Evans Jr., Thomas C.

Publication type:

Article

A dynamic checkpoint in oxidative lesion discrimination by formamidopyrimidine--DNA glycosylase.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 683, doi. 10.1093/nar/gkv1092

By:

Haoquan Li;
Endutkin, Anton V.;
Bergonzo, Christina;
Campbell, Arthur J.;
de los Santos, Carlos;
Grollman, Arthur;
Zharkov, Dmitry O.;
Simmerling, Carlos

Publication type:

Article

Imprinting control regions (ICRs) are marked by mono-allelic bivalent chromatin when transcriptionally inactive.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 621, doi. 10.1093/nar/gkv960

By:

Maupetit-Méhouas, Stéphanie;
Montibus, Bertille;
Nury, David;
Chiharu Tayama;
Wassef, Michel;
Kota, Satya K.;
Fogli, Anne;
Cerqueira Campos, Fabiana;
Kenichiro Hata;
Feil, Robert;
Margueron, Raphael;
Kazuhiko Nakabayashi;
Court, Franck;
Arnaud, Philippe

Publication type:

Article

Cellular localization of long non-coding RNAs affects silencing by RNAi more than by antisense oligonucleotides.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 863, doi. 10.1093/nar/gkv1206

By:

Lennox, Kim A.;
Behlke, Mark A.

Publication type:

Article

Nucleolar responses to DNA double-strand breaks.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 538, doi. 10.1093/nar/gkv1312

By:

Larsen, Dorthe Helena;
Stucki, Manuel

Publication type:

Article

LRH-1 drives colon cancer cell growth by repressing the expression of the CDKN1A gene in a p53-dependent manner.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 582, doi. 10.1093/nar/gkv948

By:

Kramer, Holly B.;
Chun-Fui Lai;
Patel, Hetal;
Periyasamy, Manikandan;
Meng-Lay Lin;
Feller, Stephan M.;
Fuller-Pace, Frances V.;
Meek, David W.;
Ali, Simak;
Buluwela, Laki

Publication type:

Article

Lack of correlation between reaction speed and analytical sensitivity in isothermal amplification reveals the value of digital methods for optimization: validation using digital real-time RT-LAMP.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 1, doi. 10.1093/nar/gkv877

By:

Khorosheva, Eugenia M.;
Karymov, Mikhail A.;
Selck, David A.;
Ismagilov, Rustem F.

Publication type:

Article

CstF-64 and 3'-UTR cis-element determine Star-PAP specificity for target mRNA selection by excluding PAPα.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 811, doi. 10.1093/nar/gkv1074

By:

Kandala, Divya T.;
Mohan, Nimmy;
Vivekanand, A.;
Sudheesh, A. P.;
Reshmi, G.;
Laishram, Rakesh S.

Publication type:

Article

Regulation of mammalian transcription and splicing by Nuclear RNAi.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 524, doi. 10.1093/nar/gkv1305

By:

Kalantari, Roya;
Cheng-Ming Chiang;
Corey, David R.

Publication type:

Article

Nucleotide modifications within bacterial messenger RNAs regulate their translation and are able to rewire the genetic code.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 852, doi. 10.1093/nar/gkv1182

By:

Hoernes, Thomas Philipp;
Clementi, Nina;
Faserl, Klaus;
Glasner, Heidelinde;
Breuker, Kathrin;
Lindner, Herbert;
Hüuttenhofer, Alexander;
Erlacher, Matthias David

Publication type:

Article

G-quadruplexes with (4n - 1) guanines in the G-tetrad core: formation of a G-triad*water complex and implication for small-molecule binding.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 910, doi. 10.1093/nar/gkv1357

By:

Heddi, Brahim;
Martín-Pintado, Nerea;
Serimbetov, Zhalgas;
Aufar Kari, Teuku Mahfuzh;
Phan, Anh Tuân

Publication type:

Article

DNA recognition for virus assembly through multiple sequence-independent interactions with a helix-turn-helix motif.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 776, doi. 10.1093/nar/gkv1467

By:

Greive, Sandra J.;
Fung, Herman K. H.;
Chechik, Maria;
Jenkins, Huw T.;
Weitzel, Stephen E.;
Aguiar, Pedro M.;
Brentnall, Andrew S.;
Glousieau, Matthieu;
Gladyshev, Grigory V.;
Potts, Jennifer R.;
Antson, Alfred A.

Publication type:

Article

Adapting capillary gel electrophoresis as a sensitive, high-throughput method to accelerate characterization of nucleic acid metabolic enzymes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 1, doi. 10.1093/nar/gkv899

By:

Greenough, Lucia;
Schermerhorn, Kelly M.;
Mazzola, Laurie;
Bybee, Joanna;
Rivizzigno, Danielle;
Cantin, Elizabeth;
Slatko, Barton E.;
Gardner, Andrew F.

Publication type:

Article

Domain swapping between homologous bacterial small RNAs dissects processing and Hfq binding determinants and uncovers an aptamer for conditional RNase E cleavage.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 824, doi. 10.1093/nar/gkv1161

By:

Göpel, Yvonne;
Khan, Muna Ayesha;
Görke, Boris

Publication type:

Article

Multiple Cis-acting elements modulate programmed -1 ribosomal frameshifting in Pea enation mosaic virus.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 878, doi. 10.1093/nar/gkv1241

By:

Feng Gao;
Simon, Anne E.

Publication type:

Article

Beegle: from literature mining to disease-gene discovery.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 1, doi. 10.1093/nar/gkv905

By:

ElShal, Sarah;
Tranchevent, Léon-Charles;
Sifrim, Alejandro;
Ardeshirdavani, Amin;
Davis, Jesse;
Moreau, Yves

Publication type:

Article

Slx4 and Rtt107 control checkpoint signalling and DNA resection at double-strand breaks.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 669, doi. 10.1093/nar/gkv1080

By:

Dibitetto, Diego;
Ferrari, Matteo;
Rawal, Chetan C.;
Balint, Attila;
TaeHyung Kim;
Zhaolei Zhang;
Smolka, Marcus B.;
Brown, Grant W.;
Marini, Federica;
Pellicioli, Achille

Publication type:

Article

Taking a molecular motor for a spin: helicase mechanism studied by spin labeling and PELDOR.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 954, doi. 10.1093/nar/gkv1373

By:

Constantinescu-Aruxandei, Diana;
Petrovic-Stojanovska, Biljana;
Schiemann, Olav;
Naismith, James H.;
White, Malcolm F.

Publication type:

Article

Novel nucleosomal particles containing core histones and linker DNA but no histone H1.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 573, doi. 10.1093/nar/gkv943

By:

Cole, Hope A.;
Feng Cui;
Ocampo, Josefina;
Burke, Tara L.;
Nikitina, Tatiana;
Nagarajavel, V.;
Naoe Kotomura;
Zhurkin, Victor B.;
Clark, David J.

Publication type:

Article

Tim/Timeless, a member of the replication fork protection complex, operates with the Warsaw breakage syndrome DNA helicase DDX11 in the same fork recovery pathway.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 705, doi. 10.1093/nar/gkv1112

By:

Calì, Federica;
Bharti, Sanjay Kumar;
Di Perna, Roberta;
Brosh Jr., Robert M.;
Pisani, Francesca M.

Publication type:

Article

Probing binding hot spots at protein--RNA recognition sites.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 1, doi. 10.1093/nar/gkv876

By:

Barik, Amita;
Nithin, Chandran;
Rao Karampudi, Naga Bhushana;
Mukherjee, Sunandan;
Bahadur, Ranjit Prasad

Publication type:

Article

Polysome shift assay for direct measurement of miRNA inhibition by anti-miRNA drugs.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 2, p. 1, doi. 10.1093/nar/gkv893

By:

Androsavich, John R.;
Sobczynski, Daniel J.;
Xueqing Liu;
Pandya, Shweta;
Kaimal, Vivek;
Owen, Tate;
Liu, Kai;
MacKenna, Deidre A.;
Chau, B. Nelson

Publication type:

Article