Works matching IS 03051048 AND DT 2016 AND VI 44 AND IP 19

Results: 43

Transcription of telomeric DNA leads to high levels of homologous recombination and t-loops.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9369, doi. 10.1093/nar/gkw779

By:

Kar, Anirban;
Willcox, Smaranda;
Griffith, Jack D.

Publication type:

Article

G-quadruplex prediction in E. coli genome reveals a conserved putative G-quadruplex-Hairpin-Duplex switch.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9083, doi. 10.1093/nar/gkw769

By:

Kaplan, Oktay I.;
Berber, Burak;
Hekim, Nezih;
Doluca, Osman

Publication type:

Article

Identifying proteins that bind to specific RNAs - focus on simple repeat expansion diseases.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9050, doi. 10.1093/nar/gkw803

By:

Jazurek, Magdalena;
Ciesiolka, Adam;
Starega-Roslan, Julia;
Bilinska, Katarzyna;
Krzyzosiak, Wlodzimierz J.

Publication type:

Article

An easy and efficient inducible CRISPR/Cas9 platform with improved specificity for multiple gene targeting.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 1, doi. 10.1093/nar/gkw660

By:

Jian Cao;
Lizhen Wu;
Shang-Min Zhang;
Min Lu;
Cheung, William K. C.;
Cai, Wesley;
Gale, Molly;
Qi Xu;
Qin Yan

Publication type:

Article

FocalScan: Scanning for altered genes in cancer based on coordinated DNA and RNA change.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 1, doi. 10.1093/nar/gkw674

By:

Karlsson, Joakim;
Larsson, Erik

Publication type:

Article

Predictive biophysical modeling and understanding of the dynamics of mRNA translation and its evolution.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9031, doi. 10.1093/nar/gkw764

By:

Zur, Hadas;
Tuller, Tamir

Publication type:

Article

Structural basis for single-stranded RNA recognition and cleavage by C3PO.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9494, doi. 10.1093/nar/gkw776

By:

Jing Zhang;
Hehua Liu;
Qingqing Yao;
Xiang Yu;
Yiqing Chen;
Ruixue Cui;
Baixing Wu;
Lina Zheng;
Junjun Zuo;
Zhen Huang;
Jinbiao Ma;
Jianhua Gan

Publication type:

Article

Meiotic prophase roles of Rec8 in crossover recombination and chromosome structure.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9296, doi. 10.1093/nar/gkw682

By:

Sang-Wook Yoon;
Min-Su Lee;
Xaver, Martin;
Liangran Zhang;
Soo-Gil Hong;
Yoon-Ju Kong;
Hong-Rae Cho;
Kleckner, Nancy;
Kim, Keun P.

Publication type:

Article

Extensive ceRNA–ceRNA interaction networks mediated by miRNAs regulate development in multiple rhesus tissues.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9438, doi. 10.1093/nar/gkw587

By:

Juan Xu;
Lin Feng;
Zujing Han;
Yongsheng Li;
Aiwei Wu;
Tingting Shao;
Na Ding;
Lili Li;
Wei Deng;
Xuebing Di;
Jian Wang;
Lianfeng Zhang;
Xia Li;
Kaitai Zhang;
Shujun Cheng

Publication type:

Article

Translesion synthesis of O<sup>4</sup>-alkylthymidine lesions in human cells.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9256, doi. 10.1093/nar/gkw662

By:

Jun Wu;
Lin Li;
Pengcheng Wang;
Changjun You;
Williams, Nicole L.;
Yinsheng Wang

Publication type:

Article

The zinc fingers of YY1 bind single-stranded RNA with low sequence specificity.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9153, doi. 10.1093/nar/gkw590

By:

Wai, Dorothy C. C.;
Shihab, Manar;
Low, Jason K. K.;
Mackay, Joel P.

Publication type:

Article

Set7 mediated interactions regulate transcriptional networks in embryonic stem cells.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9206, doi. 10.1093/nar/gkw621

By:

Tuano, Natasha K.;
Jun Okabe;
Ziemann, Mark;
Cooper, Mark E.;
El-Osta, Assam

Publication type:

Article

Incorporating a guanidine-modified cytosine base into triplex-forming PNAs for the recognition of a C-G pyrimidine–purine inversion site of an RNA duplex.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9071, doi. 10.1093/nar/gkw778

By:

Desiree-Faye Kaixin Toh;
Devi, Gitali;
Patil, Kiran M.;
Qiuyu Qu;
Maraswami, Manikantha;
Yunyun Xiao;
Teck Peng Loh;
Yanli Zhao;
Gang Chen

Publication type:

Article

Poly(ADP-ribose) polymerases covalently modify strand break termini in DNA fragments in vitro.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9279, doi. 10.1093/nar/gkw675

By:

Talhaoui, Ibtissam;
Lebedeva, Natalia A.;
Zarkovic, Gabriella;
Saint-Pierre, Christine;
Kutuzov, Mikhail M.;
Sukhanova, Maria V.;
Matkarimov, Bakhyt T.;
Gasparutto, Didier;
Saparbaev, Murat K.;
Lavrik, Olga I.;
Ishchenko, Alexander A.

Publication type:

Article

Long-range correlations in the mechanics of small DNA circles under topological stress revealed by multi-scale simulation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9121, doi. 10.1093/nar/gkw815

By:

Thana Sutthibutpong;
Matek, Christian;
Benham, Craig;
Slade, Gabriel G.;
Noy, Agnes;
Laughton, Charles;
Doye, Jonathan P. K.;
Louis, Ard A.;
Harris, Sarah A.

Publication type:

Article

Elimination of unaltered DNA in mixed clinical samples via nuclease-assisted minor-allele enrichment.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 1, doi. 10.1093/nar/gkw650

By:

Chen Song;
Yibin Liu;
Fontana, Rachel;
Makrigiorgos, Alexander;
Mamon, Harvey;
Kulke, Matthew H.;
Makrigiorgos, G. Mike

Publication type:

Article

RNA regulators responding to ribosomal protein S15 are frequent in sequence space.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9331, doi. 10.1093/nar/gkw754

By:

Slinger, Betty L.;
Meyer, Michelle M.

Publication type:

Article

High-resolution structure of the presynaptic RAD51 filament on single-stranded DNA by electron cryo-microscopy.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9017, doi. 10.1093/nar/gkw783

By:

Short, Judith M.;
Yang Liu;
Shaoxia Chen;
Soni, Neelesh;
Madhusudhan, Mallur S.;
Shivji, Mahmud K. K.;
Venkitaraman, Ashok R.

Publication type:

Article

Identification of non-coding genetic variants in samples from hypoxemic respiratory disease patients that affect the transcriptional response to hypoxia.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9315, doi. 10.1093/nar/gkw811

By:

Roche, Olga;
Deguiz, María Laura;
Tiana, María;
Galiana-Ribote, Clara;
Martinez-Alcazar, Daniel;
Rey-Serra, Carlos;
Ranz-Ribeiro, Beatriz;
Casitas, Raquel;
Galera, Raúl;
Fernández-Navarro, Isabel;
Sánchez-Cuéllar, Silvia;
Bernard, Virginie;
Ancochea, Julio;
Wasserman, Wyeth W.;
García-Rio, Francisco;
Jimenez, Benilde;
del Peso, Luis

Publication type:

Article

Arginine methylation promotes translation repression activity of eIF4G-binding protein, Scd6.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9358, doi. 10.1093/nar/gkw762

By:

Poornima, Gopalakrishna;
Shah, Shanaya;
Vignesh, Venkadasubramanian;
Parker, Roy;
Rajyaguru, Purusharth I.

Publication type:

Article

Different N-terminal isoforms of Oct-1 control expression of distinct sets of genes and their high levels in Namalwa Burkitt’s lymphoma cells affect a wide range of cellular processes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9218, doi. 10.1093/nar/gkw623

By:

Pankratova, Elizaveta V.;
Stepchenko, Alexander G.;
Portseva, Tatiana;
Mogila, Vladic A.;
Georgieva, Sofia G.

Publication type:

Article

Atomic structure of an archaeal GAN suggests its dual roles as an exonuclease in DNA repair and a CMG component in DNA replication.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9505, doi. 10.1093/nar/gkw789

By:

Takuji Oyama;
Sonoko Ishino;
Tsuyoshi Shirai;
Takeshi Yamagami;
Mariko Nagata;
Hiromi Ogino;
Masami Kusunoki;
Yoshizumi Ishino

Publication type:

Article

Histone H2B mono-ubiquitylation maintains genomic integrity at stalled replication forks.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9245, doi. 10.1093/nar/gkw658

By:

Northam, Matthew R.;
Trujillo, Kelly M.

Publication type:

Article

Novel m4C modification in type I restriction-modification systems.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9413, doi. 10.1093/nar/gkw743

By:

Morgan, Richard D.;
Luyten, Yvette A.;
Johnson, Samuel A.;
Clough, Emily M.;
Clark, Tyson A.;
Roberts, Richard J.

Publication type:

Article

A basic domain in the histone H2B N-terminal tail is important for nucleosome assembly by FACT.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9142, doi. 10.1093/nar/gkw588

By:

Peng Mao;
Kyriss, McKenna N. M.;
Hodges, Amelia J.;
Mingrui Duan;
Morris, Robert T.;
Lavine, Mark D.;
Topping, Traci B.;
Gloss, Lisa M.;
Wyrick, John J.

Publication type:

Article

A subset of replication-dependent histone mRNAs are expressed as polyadenylated RNAs in terminally differentiated tissues.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9190, doi. 10.1093/nar/gkw620

By:

Lyons, Shawn M.;
Cunningham, Clark H.;
Welch, Joshua D.;
Groh, Beezly;
Guo, Andrew Y.;
Bruce Wei;
Whitfield, Michael L.;
Yue Xiong;
Marzluff, William F.

Publication type:

Article

SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 1, doi. 10.1093/nar/gkw655

By:

Lopez-Maestre, Hélène;
Brinza, Lilia;
Marchet, Camille;
Kielbassa, Janice;
Bastien, Sylvère;
Boutigny, Mathilde;
Monnin, David;
Filali, Adil El;
Carareto, Claudia Marcia;
Vieira, Cristina;
Picard, Franck;
Kremer, Natacha;
Vavre, Fabrice;
Sagot, Marie-France;
Lacroix, Vincent

Publication type:

Article

DNA-binding protects p53 from interactions with cofactors involved in transcription-independent functions.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9096, doi. 10.1093/nar/gkw770

By:

Lambrughi, Matteo;
De Gioia, Luca;
Gervasio, Francesco Luigi;
Lindorff-Larsen, Kresten;
Nussinov, Ruth;
Urani, Chiara;
Bruschi, Maurizio;
Papaleo, Elena

Publication type:

Article

Entropic stabilization of folded RNA in crowded solutions measured by SAXS.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9452, doi. 10.1093/nar/gkw597

By:

Kilburn, Duncan;
Behrouzi, Reza;
Hui-Ting Lee;
Sarkar, Krishnarjun;
Briber, Robert M.;
Woodson, Sarah A.

Publication type:

Article

Phospho-site mutants of the RNA Polymerase II C-terminal domain alter subtelomeric gene expression and chromatin modification state in fission yeast.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9180, doi. 10.1093/nar/gkw603

By:

Maki Inada;
Nichols, Robert J.;
Parsa, Jahan-Yar;
Homer, Christina M.;
Benn, Ruby A.;
Hoxie, Reyal S.;
Madhani, Hiten D.;
Shuman, Stewart;
Schwer, Beate;
Pleiss, Jeffrey A.

Publication type:

Article

Delta chirality ruthenium ‘light-switch’ complexes can bind in the minor groove of DNA with five different binding modes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9472, doi. 10.1093/nar/gkw753

By:

Hall, James P.;
Keane, Páraic M.;
Beer, Hanna;
Buchner, Katrin;
Winter, Graeme;
Sorensen, Thomas L.;
Cardin, David J.;
Brazier, John A.;
Cardin, Christine J.

Publication type:

Article

Identification of the mRNA targets of tRNA-specific regulation using genome-wide simulation of translation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9231, doi. 10.1093/nar/gkw630

By:

Gorgoni, Barbara;
Ciandrini, Luca;
McFarland, Matthew R.;
Romano, M. Carmen;
Stansfield, Ian

Publication type:

Article

Sir2 regulates stability of repetitive domains differentially in the human fungal pathogen Candida albicans.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9166, doi. 10.1093/nar/gkw594

By:

Freire-Benéitez, Verónica;
Gourlay, Sarah;
Berman, Judith;
Buscaino, Alessia

Publication type:

Article

Contiguous and accurate de novo assembly of metazoan genomes with modest long read coverage.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 1, doi. 10.1093/nar/gkw654

By:

Chakraborty, Mahul;
Baldwin-Brown, James G.;
Long, Anthony D.;
Emerson, J. J.

Publication type:

Article

The structure of the pleiotropic transcription regulator CodY provides insight into its GTP-sensing mechanism.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9483, doi. 10.1093/nar/gkw775

By:

Ah-reum Han;
Hye-Ri Kang.;
Jonghyeon Son;
Do Hoon Kwon;
Sulhee Kim;
Woo Cheol Lee;
Hyun Kyu Song;
Moon Jung Song;
Kwang Yeon Hwang

Publication type:

Article

Chromatin structure-dependent conformations of the H1 CTD.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9131, doi. 10.1093/nar/gkw586

By:

He Fang;
Sijie Wei;
Tae-Hee Lee;
Hayes, Jeffrey J.

Publication type:

Article

Long non-coding RNA INXS is a critical mediator of BCL-XS induced apoptosis.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9518, doi. 10.1093/nar/gkw713

By:

DeOcesano-Pereira, Carlos;
Amaral, Murilo S.;
Parreira, Kleber S.;
Ayupe, Ana C.;
Jacysyn, Jacqueline F.;
Amarante-Mendes, Gustavo P.;
Reis, Eduardo M.;
Verjovski-Almeida, Sergio

Publication type:

Article

Inverted repeat Alu elements in the human lincRNA-p21 adopt a conserved secondary structure that regulates RNA function.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9462, doi. 10.1093/nar/gkw599

By:

Chillón, Isabel;
Pyle, Anna M.

Publication type:

Article

OGT restrains the expansion of DNA damage signaling.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9266, doi. 10.1093/nar/gkw663

By:

Qiang Chen;
Xiaochun Yu

Publication type:

Article

Maps of context-dependent putative regulatory regions and genomic signal interactions.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9110, doi. 10.1093/nar/gkw800

By:

Diamanti, Klev;
Umer, Husen M.;
Kruczyk, Marcin;
Dąbrowski, Michał J.;
Cavalli, Marco;
Wadelius, Claes;
Komorowski, Jan

Publication type:

Article

Multipronged regulatory functions of a novel endonuclease (TieA) from Helicobacter pylori.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9393, doi. 10.1093/nar/gkw730

By:

Devi, Savita;
Ansari, Suhail A.;
Tenguria, Shivendra;
Kumar, Naveen;
Ahmed, Niyaz

Publication type:

Article

Stable nuclear expression of ATP8 and ATP6 genes rescues a mtDNA Complex V null mutant.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9342, doi. 10.1093/nar/gkw756

By:

Boominathan, Amutha;
Vanhoozer, Shon;
Basisty, Nathan;
Powers, Kathleen;
Crampton, Alexandra L.;
Xiaobin Wang;
Friedricks, Natalie;
Schilling, Birgit;
Brand, Martin D.;
O’Connor, Matthew S.

Publication type:

Article

Structure and mechanism of a molecular rheostat, an RNA thermometer that modulates immune evasion by Neisseria meningitidis.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 19, p. 9426, doi. 10.1093/nar/gkw584

By:

Barnwal, Ravi Pratap;
Loh, Edmund;
Godin, Katherine S.;
Yip, Jordan;
Lavender, Hayley;
Tang, Christoph M.;
Varani, Gabriele

Publication type:

Article