Works matching IS 03051048 AND DT 2016 AND VI 44 AND IP 18

Results: 43

G-quadruplex recognition and remodeling by the FANCJ helicase.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8742, doi. 10.1093/nar/gkw574

By:

Wu, Colin G.;
Spies, Maria

Publication type:

Article

The PIN domain endonuclease Utp24 cleaves pre-ribosomal RNA at two coupled sites in yeast and humans.

Published in:: Nucleic Acids Research, 2016, v. 44, n. 18, p. 9016, doi. 10.1093/nar/gkw645
Publication type:: Article

Using NMR and molecular dynamics to link structure and dynamics effects of the universal base 8-aza, 7-deaza, N8 linked adenosine analog.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8576, doi. 10.1093/nar/gkw736

By:

Spring-Connell, Alexander M.;
Evich, Marina G.;
Debelak, Harald;
Seela, Frank;
Germann, Markus W.

Publication type:

Article

Box C/D sRNA stem ends act as stabilizing anchors for box C/D di-sRNPs.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8976, doi. 10.1093/nar/gkw576

By:

Yip, W. S. Vincent;
Hideki Shigematsu;
Taylor, David W.;
Baserga, Susan J.

Publication type:

Article

DDK dependent regulation of TOP2A at centromeres revealed by a chemical genetics approach.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8786, doi. 10.1093/nar/gkw626

By:

Wu, Kevin Z. L.;
Guan-Nan Wang;
Fitzgerald, Jennifer;
Huong Quachthithu;
Rainey, Michael D.;
Cattaneo, Angela;
Bachi, Angela;
Santocanale, Corrado

Publication type:

Article

Molecular signatures associated with ZIKV exposure in human cortical neural progenitors.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8610, doi. 10.1093/nar/gkw765

By:

Feiran Zhang;
Hammack, Christy;
Ogden, Sarah C.;
Yichen Cheng;
Lee, Emily M.;
Zhexing Wen;
Xuyu Qian;
Ha Nam Nguyen;
Yujing Li;
Bing Yao;
Miao Xu;
Tianlei Xu;
Li Chen;
Zhiqin Wang;
Hao Feng;
Wei-Kai Huang;
Ki-jun Yoon;
Chao Shan;
Luoxiu Huang;
Zhaohui Qin

Publication type:

Article

Tumor suppressor protein DAB2IP participates in chromosomal stability maintenance through activating spindle assembly checkpoint and stabilizing kinetochore-microtubule attachments.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8842, doi. 10.1093/nar/gkw746

By:

Lan Yu;
Zeng-Fu Shang;
Abdisalaam, Salim;
Kyung-Jong Lee;
Gupta, Arun;
Jer-Tsong Hsieh;
Asaithamby, Aroumougame;
Chen, Benjamin P. C.;
Saha, Debabrata

Publication type:

Article

Mitochondrial DNA exhibits resistance to induced point and deletion mutations.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8513, doi. 10.1093/nar/gkw716

By:

Valente, William J.;
Ericson, Nolan G.;
Long, Alexandra S.;
White, Paul A.;
Marchetti, Francesco;
Bielas, Jason H.

Publication type:

Article

The complete chemical structure of Saccharomyces cerevisiae rRNA: partial pseudouridylation of U2345 in 25S rRNA by snoRNA snR9.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8951, doi. 10.1093/nar/gkw564

By:

Masato Taoka;
Yuko Nobe;
Yuka Yamaki;
Yoshio Yamauchi;
Hideaki Ishikawa;
Nobuhiro Takahashi;
Hiroshi Nakayama;
Toshiaki Isobe

Publication type:

Article

Antibiotic resistance evolved via inactivation of a ribosomal RNA methylating enzyme.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8897, doi. 10.1093/nar/gkw699

By:

Stojković, Vanja;
Noda-Garcia, Lianet;
Tawfik, Dan S.;
Fujimori, Danica Galonić

Publication type:

Article

Differential sensitivity to methylated DNA by ETS-family transcription factors is intrinsically encoded in their DNA-binding domains.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8671, doi. 10.1093/nar/gkw528

By:

Stephens, Dominique C.;
Poon, Gregory M. K.

Publication type:

Article

The role of sequence context, nucleotide pool balance and stress in 2'-deoxynucleotide misincorporation in viral, bacterial and mammalian RNA.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8962, doi. 10.1093/nar/gkw572

By:

Jin Wang;
Hongping Dong;
Yok Hian Chionh;
McBee, Megan E.;
Sirirungruang, Sasilada;
Cunningham, Richard P.;
Pei-Yong Shi;
Dedon, Peter C.

Publication type:

Article

Investigating essential gene function in Mycobacterium tuberculosis using an efficient CRISPR interference system.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 1, doi. 10.1093/nar/gkw625

By:

Singh, Atul K.;
Carette, Xavier;
Potluri, Lakshmi-Prasad;
Sharp, Jared D.;
Ranfei Xu;
Prisic, Sladjana;
Husson, Robert N.

Publication type:

Article

RecA stimulates AlkB-mediated direct repair of DNA adducts.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8754, doi. 10.1093/nar/gkw611

By:

Shivange, Gururaj;
Monisha, Mohan;
Nigam, Richa;
Kodipelli, Naveena;
Anindya, Roy

Publication type:

Article

Network analysis of transcriptomics expands regulatory landscapes in Synechococcus sp. PCC 7002.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8810, doi. 10.1093/nar/gkw737

By:

McClure, Ryan S.;
Overall, Christopher C.;
McDermott, Jason E.;
Hill, Eric A.;
Markillie, Lye Meng;
McCue, Lee Ann;
Taylor, Ronald C.;
Ludwig, Marcus;
Bryant, Donald A.;
Beliaev, Alexander S.

Publication type:

Article

High-temperature single-molecule kinetic analysis of thermophilic archaeal MCM helicases.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8764, doi. 10.1093/nar/gkw612

By:

Schermerhorn, Kelly M.;
Tanner, Nathan;
Kelman, Zvi;
Gardner, Andrew F.

Publication type:

Article

The alternative splicing program of differentiated smooth muscle cells involves concerted non-productive splicing of post-transcriptional regulators.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8933, doi. 10.1093/nar/gkw560

By:

Llorian, Miriam;
Gooding, Clare;
Bellora, Nicolas;
Hallegger, Martina;
Buckroyd, Adrian;
Xiao Wang;
Rajgor, Dipen;
Kayikci, Melis;
Feltham, Jack;
Ule, Jernej;
Eyras, Eduardo;
Smith, Christopher W. J.

Publication type:

Article

Optimizing sgRNA position markedly improves the efficiency of CRISPR/dCas9-mediated transcriptional repression.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 1, doi. 10.1093/nar/gkw583

By:

Radzisheuskaya, Aliaksandra;
Shlyueva, Daria;
Müller, Iris;
Helin, Kristian

Publication type:

Article

Force and twist dependence of RepC nicking activity on torsionally-constrained DNA molecules.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8885, doi. 10.1093/nar/gkw689

By:

Pastrana, Cesar L.;
Carrasco, Carolina;
Akhtar, Parvez;
Leuba, Sanford H.;
Khan, Saleem A.;
Moreno-Herrero, Fernando

Publication type:

Article

Global transcript structure resolution of high gene density genomes through multi-platform data integration.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 1, doi. 10.1093/nar/gkw629

By:

O'Grady, Tina;
Xia Wang;
Höner zu Bentrup, Kerstin;
Baddoo, Melody;
Concha, Monica;
Flemington, Erik K.

Publication type:

Article

MyoD reprogramming requires Six1 and Six4 homeoproteins: genome-wide cis-regulatory module analysis.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8621, doi. 10.1093/nar/gkw512

By:

Santolini, Marc;
Sakakibara, Iori;
Gauthier, Morgane;
Ribas-Aulinas, Francesc;
Hirotaka Takahashi;
Tatsuya Sawasaki;
Mouly, Vincent;
Concordet, Jean-Paul;
Defossez, Pierre-Antoine;
Hakim, Vincent;
Maire, Pascal

Publication type:

Article

Multiple consecutive initiation of replication producing novel brush-like intermediates at the termini of linear viral dsDNA genomes with hairpin ends.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8799, doi. 10.1093/nar/gkw636

By:

Martínez-Alvarez, Laura;
Bell, Stephen D.;
Xu Peng

Publication type:

Article

A novel method for the identification of conserved structural patterns in RNA: From small scale to high-throughput applications.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8600, doi. 10.1093/nar/gkw750

By:

Pietrosanto, Marco;
Mattei, Eugenio;
Helmer-Citterich, Manuela;
Ferrè, Fabrizio

Publication type:

Article

hTERT promotes tumor angiogenesis by activating VEGF via interactions with the Sp1 transcription factor.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8693, doi. 10.1093/nar/gkw549

By:

Ning Liu;
Deqiang Ding;
Wanyu Hao;
Fan Yang;
Xiaoying Wu;
Miao Wang;
Xiaoling Xu;
Zhenyu Ju;
Jun-Ping Liu;
Zhangfa Song;
Shay, Jerry W.;
Yunliang Guo;
Yu-Sheng Cong

Publication type:

Article

Rational design of a synthetic mammalian riboswitch as a ligand-responsive -1 ribosomal frame-shifting stimulator.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 9005, doi. 10.1093/nar/gkw718

By:

Ya-Hui Lin;
Kung-Yao Chang

Publication type:

Article

Joint Bayesian inference of risk variants and tissue-specific epigenomic enrichments across multiple complex human diseases.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 1, doi. 10.1093/nar/gkw627

By:

Yue Li;
Kellis, Manolis

Publication type:

Article

Sam68 functions as a transcriptional coactivator of the p53 tumor suppressor.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8726, doi. 10.1093/nar/gkw582

By:

Naomi Li;
Richard, Stéphane

Publication type:

Article

Overexpression of eIF5 or its protein mimic 5MP perturbs eIF2 function and induces ATF4 translation through delayed re-initiation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8704, doi. 10.1093/nar/gkw559

By:

Kozel, Caitlin;
Thompson, Brytteny;
Hustak, Samantha;
Moore, Chelsea;
Akio Nakashima;
Singh, Chingakham Ranjit;
Reid, Megan;
Cox, Christian;
Papadopoulos, Evangelos;
Luna, Rafael E.;
Anderson, Abbey;
Hideaki Tagami;
Hiroyuki Hiraishi;
Slone, Emily Archer;
Ken-ichi Yoshino;
Masayo Asano;
Gillaspie, Sarah;
Nietfeld, Jerome;
Perchellet, Jean-Pierre;
Rothenburg, Stefan

Publication type:

Article

A primary role of TET proteins in establishment and maintenance of De Novo bivalency at CpG islands.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8682, doi. 10.1093/nar/gkw529

By:

Lingchun Kong;
Li Tan;
Ruitu Lv;
Zhennan Shi;
Lijun Xiong;
Feizhen Wu;
Rabidou, Kimberlie;
Smith, Michael;
He, Celestine;
Lei Zhang;
Yanyan Qian;
Duan Ma;
Fei Lan;
Yang Shi;
Yujiang Geno Shi

Publication type:

Article

Crossover-site sequence and DNA torsional stress control strand interchanges by the Bxb1 site-specific serine recombinase.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8921, doi. 10.1093/nar/gkw724

By:

Keenholtz, Ross A.;
Grindley, Nigel D. F.;
Hatfull, Graham F.;
Marko, John F.

Publication type:

Article

Identification of multi-loci hubs from 4C-seq demonstrates the functional importance of simultaneous interactions.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8714, doi. 10.1093/nar/gkw568

By:

Tingting Jiang;
Raviram, Ramya;
Snetkova, Valentina;
Rocha, Pedro P.;
Proudhon, Charlotte;
Badri, Sana;
Bonneau, Richard;
Skok, Jane A.;
Kluger, Yuval

Publication type:

Article

Explaining the disease phenotype of intergenic SNP through predicted long range regulation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8641, doi. 10.1093/nar/gkw519

By:

Jingqi Chen;
Weidong Tian

Publication type:

Article

Absolute quantitative measurement of transcriptional kinetic parameters in vivo.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 1, doi. 10.1093/nar/gkw596

By:

Sukanya Iyer;
Bo Ryoung Park;
Minsu Kim

Publication type:

Article

Structures of mithramycin analogues bound to DNA and implications for targeting transcription factor FLI1.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8990, doi. 10.1093/nar/gkw761

By:

Caixia Hou;
Weidenbach, Stevi;
Cano, Kristin E.;
Zhonghua Wang;
Mitra, Prithiba;
Ivanov, Dmitri N.;
Rohr, Jürgen;
Tsodikov, Oleg V.

Publication type:

Article

SOX9 is targeted for proteasomal degradation by the E3 ligase FBW7 in response to DNA damage.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8855, doi. 10.1093/nar/gkw748

By:

Xuehui Hong;
Wenyu Liu1;
Ruipeng Song;
Shah, Jamie J.;
Xing Feng;
Chi Kwan Tsang;
Morgan, Katherine M.;
Bunting, Samuel F.;
Hiroyuki Inuzuka;
Zheng, X. F. Steven;
Zhiyuan Shen;
Sabaawy, Hatem E.;
LianXin Liu;
Pine, Sharon R.

Publication type:

Article

Tma108, a putative M1 aminopeptidase, is a specific nascent chain-associated protein in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8826, doi. 10.1093/nar/gkw732

By:

Delaveau, Thierry;
Davoine, Dimitri;
Jolly, Ariane;
Vallot, Antoine;
Rouvière, Jérôme O.;
Gerber, Athenaïs;
Brochet, Sandra;
Plessis, Marion;
Roquigny, Roxane;
Merhej, Jawad;
Leger, Thibaut;
Garcia, Camille;
Lelandais, Gaëlle;
Laine, Elodie;
Palancade, Benoit;
Devaux, Frédéric;
Garcia, Mathilde

Publication type:

Article

Allosteric control of mammalian DNA methyltransferases -- a new regulatory paradigm.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8556, doi. 10.1093/nar/gkw723

By:

Jeltsch, Albert;
Jurkowska, Renata Z.

Publication type:

Article

RNA damage in biological conflicts and the diversity of responding RNA repair systems.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8525, doi. 10.1093/nar/gkw722

By:

Burroughs, A. Maxwell;
Aravind, L.

Publication type:

Article

Correlation of bistranded clustered abasic DNA lesion processing with structural and dynamic DNA helix distortion.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8588, doi. 10.1093/nar/gkw773

By:

Bignon, Emmanuelle;
Gattuso, Hugo;
Morell, Christophe;
Dehez, François;
Georgakilas, Alexandros G.;
Monari, Antonio;
Dumont, Elise

Publication type:

Article

LSD1 engages a corepressor complex for the activation of the estrogen receptor α by estrogen and cAMP.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8655, doi. 10.1093/nar/gkw522

By:

Bennesch, Marcela A.;
Segala, Gregory;
Wider, Diana;
Picard, Didier

Publication type:

Article

Human CDK18 promotes replication stress signaling and genome stability.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8772, doi. 10.1093/nar/gkw615

By:

Barone, Giancarlo;
Staples, Christopher J.;
Ganesh, Anil;
Patterson, Karl W.;
Bryne, Dominic P.;
Myers, Katie N.;
Patil, Abhijit A.;
Eyers, Claire E.;
Maslen, Sarah;
Skehel, J. Mark;
Eyers, Patrick A.;
Collis, Spencer J.

Publication type:

Article

Mammalian PNLDC1 is a novel poly(A) specific exonuclease with discrete expression during early development.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8908, doi. 10.1093/nar/gkw709

By:

Anastasakis, Dimitrios;
Skeparnias, Ilias;
Shaukat, Athanasios-Nasir;
Grafanaki, Katerina;
Kanellou, Alexandra;
Taraviras, Stavros;
Papachristou, Dionysios J.;
Papakyriakou, Athanasios;
Stathopoulos, Constantinos

Publication type:

Article

Intersection of calorie restriction and magnesium in the suppression of genome-destabilizing RNA-DNA hybrids.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8870, doi. 10.1093/nar/gkw752

By:

Abraham, Karan J.;
Chan, Janet N. Y.;
Salvi, Jayesh S.;
Ho, Brandon;
Hall, Amanda;
Vidya, Elva;
Ru Guo;
Killackey, Samuel A.;
Liu, Nancy;
Lee, Jeffrey E.;
Brown, Grant W.;
Mekhail, Karim

Publication type:

Article