Works matching IS 03051048 AND DT 2016 AND VI 44 AND IP 16

Results: 44

Corrigendum.

Published in:: Nucleic Acids Research, 2016, v. 44, n. 16, p. 8011, doi. 10.1093/nar/gkw513
Publication type:: Article

Co-incident insertion enables high efficiency genome engineering in mouse embryonic stem cells.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7997, doi. 10.1093/nar/gkw685

By:

Shy, Brian R.;
MacDougall, Matthew S.;
Clarke, Ryan;
Merrill, Bradley J.

Publication type:

Article

Self-assembly of fully addressable DNA nanostructures from double crossover tiles.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7989, doi. 10.1093/nar/gkw670

By:

Wen Wang;
Tong Lin;
Suoyu Zhang;
Tanxi Bai;
Yongli Mi;
Bryan Wei

Publication type:

Article

Visualizing the phage T4 activated transcription complex of DNA and E. coli RNA polymerase.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7974, doi. 10.1093/nar/gkw656

By:

James, Tamara D.;
Cardozo, Timothy;
Abell, Lauren E.;
Meng-Lun Hsieh;
Miller Jenkins, Lisa M.;
Jha, Saheli S.;
Hinton, Deborah M.

Publication type:

Article

A structural analysis of DNA binding by hSSBI (NABP2/OBFC2B) in solution.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7963, doi. 10.1093/nar/gkw617

By:

Touma, Christine;
Kariawasam, Ruvini;
Gimenez, Adrian X.;
Bernardo, Ray E.;
Ashton, Nicholas W.;
Adams, Mark N.;
Paquet, Nicolas;
Croll, Tristan I.;
O'Byrne, Kenneth J.;
Richard, Derek J.;
Cubeddu, Liza;
Gamsjaeger, Roland

Publication type:

Article

An AT-barrier mechanically controls DNA reannealing under tension.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7954, doi. 10.1093/nar/gkw604

By:

Bongini, L.;
Pongor, C.;
Falorsi, G.;
Pertici, I.;
Kellermayer, M.;
Lombardi, V.;
Bianco, P.

Publication type:

Article

Mechanism of endonuclease cleavage by the HigB toxin.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7944, doi. 10.1093/nar/gkw598

By:

Schureck, Marc A.;
Repack, Adrienne;
Miles, Stacey J.;
Marquez, Jhomar;
Dunham, Christine M.

Publication type:

Article

Complementary-addressed site-directed spin labeling of long natural RNAs.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7935, doi. 10.1093/nar/gkw516

By:

Babaylova, Elena S.;
Malygin, Alexey A.;
Lomzov, Alexander A.;
Pyshnyi, Dmitrii V.;
Yulikov, Maxim;
Jeschke, Gunnar;
Krumkacheva, Olesya A.;
Fedin, Matvey V.;
Karpova, Galina G.;
Bagryanskaya, Elena G.

Publication type:

Article

Imaging HIV-1 RNA dimerization in cells by multicolor super-resolution and fluctuation microscopies.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7922, doi. 10.1093/nar/gkw511

By:

Ferrer, Mireia;
Clerté, Caroline;
Chamontin, Célia;
Basyuk, Eugenia;
Lainé, Sébastien;
Hottin, Jérome;
Bertrand, Edouard;
Margeat, Emmanuel;
Mougel, Marylène

Publication type:

Article

The catalytic efficiency of yeast ribonuclease III depends on substrate specific product release rate.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7911, doi. 10.1093/nar/gkw507

By:

Comeau, Marc-Andre;
Lafontaine, Daniel A.;
Elela, Sherif Abou

Publication type:

Article

Antagonistic control of the turnover pathway for the global regulatory sRNA CsrB by the CsrA and CsrD proteins.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7896, doi. 10.1093/nar/gkw484

By:

Vakulskas, Christopher A.;
Yuanyuan Leng;
Hazuki Abe;
Takumi Amaki;
Akihiro Okayama;
Babitzke, Paul;
Kazushi Suzuki;
Romeo, Tony

Publication type:

Article

Profiling of 2′-O-Me in human rRNA reveals a subset of fractionally modified positions and provides evidence for ribosome heterogeneity.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7884, doi. 10.1093/nar/gkw482

By:

Krogh, Nicolai;
Jansson, Martin D.;
Hafner, Sophia J.;
Tehler, Disa;
Birkedal, Ulf;
Christensen-Dalsgaard, Mikkel;
Lund, Anders H.;
Nielsen, Henrik

Publication type:

Article

Single strand transposition at the host replication fork.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7866, doi. 10.1093/nar/gkw661

By:

Lavatine, Laure;
Susu He;
Caumont-Sarcos, Anne;
Guynet, Catherine;
Marty, Brigitte;
Chandler, Mick;
Bao Ton-Hoang

Publication type:

Article

APOBEC3 proteins can copackage and comutate HIV-1 genomes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7848, doi. 10.1093/nar/gkw653

By:

Desimmie, Belete A.;
Burdick, Ryan C.;
Izumi, Taisuke;
Hibiki Doi;
Wei Shao;
Alvord, W. Gregory;
Kei Sato;
Yoshio Koyanagi;
Jones, Sara;
Wilson, Eleanor;
Hill, Shawn;
Maldarelli, Frank;
Wei-Shau Hu;
Pathak, Vinay K.

Publication type:

Article

DNA minicircles clarify the specific role of DNA structure on retroviral integration.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7830, doi. 10.1093/nar/gkw651

By:

Pasi, Marco;
Mornico, Damien;
Volant, Stevenn;
Juchet, Anna;
Batisse, Julien;
Bouchier, Christiane;
Parissi, Vincent;
Ruff, Marc;
Lavery, Richard;
Lavigne, Marc

Publication type:

Article

Length heterogeneity at conserved sequence block 2 in human mitochondrial DNA acts as a rheostat for RNA polymerase POLRMT activity.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7817, doi. 10.1093/nar/gkw648

By:

Tan, Benedict G.;
Wellesley, Frederick C.;
Savery, Nigel J.;
Szczelkun, Mark D.

Publication type:

Article

Near-complete elimination of mutant mtDNA by iterative or dynamic dose-controlled treatment with mtZFNs.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7804, doi. 10.1093/nar/gkw676

By:

Gammage, Payam A.;
Gaude, Edoardo;
Van Haute, Lindsey;
Rebelo-Guiomar, Pedro;
Jackson, Christopher B.;
Rorbach, Joanna;
Pekalski, Marcin L.;
Robinson, Alan J.;
Charpentier, Marine;
Concordet, Jean-Paul;
Frezza, Christian;
Minczuk, Michal

Publication type:

Article

Efficiency of integron cassette insertion in correct orientation is ensured by the interplay of the three unpaired features of attC recombination sites.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7792, doi. 10.1093/nar/gkw646

By:

Nivina, Aleksandra;
Escudero, José Antonio;
Vit, Claire;
Mazel, Didier;
Loot, Céline

Publication type:

Article

The eukaryote-specific N-terminal extension of ribosomal protein S31 contributes to the assembly and function of 40S ribosomal subunits.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7777, doi. 10.1093/nar/gkw641

By:

Fernández-Pevida, Antonio;
Martín-Villanueva, Sara;
Murat, Guillaume;
Lacombe, Thierry;
Kressler, Dieter;
de la Cruz, Jesús

Publication type:

Article

PABP enhances release factor recruitment and stop codon recognition during translation termination.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7766, doi. 10.1093/nar/gkw635

By:

Ivanov, Alexandr;
Mikhailova, Tatyana;
Eliseev, Boris;
Yeramala, Lahari;
Sokolova, Elizaveta;
Susorov, Denis;
Shuvalov, Alexey;
Schaffitzel, Christiane;
Alkalaeva, Elena

Publication type:

Article

Phosphorylation of Ku70 subunit by cell cycle kinases modulates the replication related function of Ku heterodimer.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7755, doi. 10.1093/nar/gkw622

By:

Mukherjee, Soumita;
Chakraborty, Prabal;
Saha, Partha

Publication type:

Article

Triplex structures induce DNA double strand breaks via replication fork collapse in NER deficient cells.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7742, doi. 10.1093/nar/gkw515

By:

Tiwari, Meetu Kaushik;
Adaku, Nneoma;
Peart, Natoya;
Rogers, Faye A.

Publication type:

Article

The Pch2 AAA+ ATPase promotes phosphorylation of the Hop1 meiotic checkpoint adaptor in response to synaptonemal complex defects.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7722, doi. 10.1093/nar/gkw506

By:

Herruzo, Esther;
Ontoso, David;
González-Arranz, Sara;
Cavero, Santiago;
Lechuga, Ana;
San-Segundo, Pedro A.

Publication type:

Article

Parallel analysis of ribonucleotide-dependent deletions produced by yeast Top1 in vitro and in vivo.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7714, doi. 10.1093/nar/gkw495

By:

Jang-Eun Cho;
Huang, Shar-yin N.;
Burgers, Peter M.;
Shuman, Stewart;
Pommier, Yves;
Jinks-Robertson, Sue

Publication type:

Article

MutS regulates access of the error-prone DNA polymerase Pol IV to replication sites: a novel mechanism for maintaining replication fidelity.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7700, doi. 10.1093/nar/gkw494

By:

Margara, Lucía M.;
Fernández, Marisa M.;
Malchiodi, Emilio L.;
Argararía, Carlos E.;
Monti, Mariela R.

Publication type:

Article

A defect in homologous recombination leads to increased translesion synthesis in E. coli.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7691, doi. 10.1093/nar/gkw488

By:

Naiman, Karel;
Pagès, Vincent;
Fuchs, Robert P.

Publication type:

Article

Chromosome thripsis by DNA double strand break clusters causes enhanced cell lethality, chromosomal translocations and 53BP1-recruitment.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7673, doi. 10.1093/nar/gkw487

By:

Schipler, Agnes;
Mladenova, Veronika;
Soni, Aashish;
Nikolov, Vladimir;
Saha, Janapriya;
Mladenov, Emil;
Iliakis, George

Publication type:

Article

EZH2 is required for mouse oocyte meiotic maturation by interacting with and stabilizing spindle assembly checkpoint protein BubRI.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7659, doi. 10.1093/nar/gkw463

By:

Yi Qu;
Danyu Lu;
Hao Jiang;
Xiaochun Chi;
Hongquan Zhang

Publication type:

Article

Defining the essential function of FBP/KSRP proteins: Drosophila Psi interacts with the mediator complex to modulate MYC transcription and tissue growth.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7646, doi. 10.1093/nar/gkw461

By:

Linna Guo;
Zaysteva, Olga;
Nie, Zuqin;
Mitchell, Naomi C.;
Amanda Lee, Jue Er;
Ware, Thomas;
Parsons, Linda;
Luwor, Rodney;
Poortinga, Gretchen;
Hannan, Ross D.;
Levens, David L.;
Quinn, Leonie M.

Publication type:

Article

PKCα and HMGB1 antagonistically control hydrogen peroxide-induced poly-ADP-ribose formation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7630, doi. 10.1093/nar/gkw442

By:

Andersson, Anneli;
Bluwstein, Andrej;
Kumar, Nitin;
Teloni, Federico;
Traenkle, Jens;
Baudis, Michael;
Altmeyer, Matthias;
Hottiger, Michael O.

Publication type:

Article

Mutational analysis of the Potyviridae transcriptional slippage site utilized for expression of the P3N-PIPO and P1N-PISPO proteins.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7618, doi. 10.1093/nar/gkw441

By:

Olspert, Allan;
Carr, John P.;
Firth, Andrew E.

Publication type:

Article

An epigenetic switch regulates de novo DNA methylation at a subset of pluripotency gene enhancers during embryonic stem cell differentiation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7605, doi. 10.1093/nar/gkw426

By:

Petell, Christopher J.;
Alabdi, Lama;
Ming He;
Miguel, Phillip San;
Rose, Richard;
Gowher, Humaira

Publication type:

Article

The SNF2 family ATPase LSH promotes cell-autonomous de novo DNA methylation in somatic cells.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7592, doi. 10.1093/nar/gkw424

By:

Termanis, Ausma;
Torrea, Natalia;
Culley, Jayne;
Kerr, Alastair;
Ramsahoye, Bernard;
Stancheva, Irina

Publication type:

Article

mRNA capping: biological functions and applications.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7511, doi. 10.1093/nar/gkw551

By:

Ramanathan, Anand;
Robb, G. Brett;
Siu-Hong Chan

Publication type:

Article

Synergistic activation of Arg1 gene by retinoic acid and IL-4 involves chromatin remodeling for transcription initiation and elongation coupling.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7568, doi. 10.1093/nar/gkw392

By:

Bomi Lee;
Cheng-Ying Wu;
Yi-Wei Lin;
Sung Wook Park;
Li-Na Wei

Publication type:

Article

Musashi mediates translational repression of the Drosophila hypoxia inducible factor.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7555, doi. 10.1093/nar/gkw372

By:

Bertolin, Agustina P.;
Katz, Maximiliano J.;
Masato Yano;
Pozzi, Berta;
Acevedo, Julieta M.;
Blanco-Obregón, Dalmiro;
Gáandara, Lautaro;
Sorianello, Eleonora;
Hiroshi Kanda;
Hideyuki Okano;
Srebrow, Anabella;
Wappner, Pablo

Publication type:

Article

Genome-wide analysis reveals positional-nucleosome-oriented binding pattern of pioneer factor FOXA1.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7540, doi. 10.1093/nar/gkw659

By:

Zhenqing Ye;
Zhong Chen;
Sunkel, Benjamin;
Frietze, Seth;
Huang, Tim H.-M.;
Qianben Wang;
Jin, Victor X.

Publication type:

Article

Cracking the control of RNA polymerase II elongation by 7SK snRNP and P-TEFb.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7527, doi. 10.1093/nar/gkw585

By:

Quaresma, Alexandre J. C.;
Bugai, Andrii;
Barboric, Matjaz

Publication type:

Article

The Chd1 chromatin remodeler can sense both entry and exit sides of the nucleosome.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 7580, doi. 10.1093/nar/gkw406

By:

Nodelman, Ilana M.;
Horvath, Kyle C.;
Levendosky, Robert F.;
Winger, Jessica;
Ren Ren;
Patel, Ashok;
Ming Li;
Wang, Michelle D.;
Roberts, Elijah;
Bowman, Gregory D.

Publication type:

Article

FACETS: allele-specific copy number and clonal heterogeneity analysis tool for high-throughput DNA sequencing.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 1, doi. 10.1093/nar/gkw520

By:

Ronglai Shen;
Seshan, Venkatraman E.

Publication type:

Article

The exon quantification pipeline (EQP): a comprehensive approach to the quantification of gene, exon and junction expression from RNA-seq data.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 1, doi. 10.1093/nar/gkw538

By:

Schuierer, Sven;
Roma, Guglielmo

Publication type:

Article

NEpiC: a network-assisted algorithm for epigenetic studies using mean and variance combined signals.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 1, doi. 10.1093/nar/gkw546

By:

Peifeng Ruan;
Jing Shen;
Santella, Regina M.;
Shuigeng Zhou;
Shuang Wang

Publication type:

Article

Boiler: lossy compression of RNA-seq alignments using coverage vectors.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 1, doi. 10.1093/nar/gkw540

By:

Pritt, Jacob;
Langmead, Ben

Publication type:

Article

Illumina-based RiboMethSeq approach for mapping of 2′-O-Me residues in RNA.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 16, p. 1, doi. 10.1093/nar/gkw547

By:

Marchand, Virginie;
Blanloeil-Oillo, Florence;
Helm, Mark;
Motorin, Yuri

Publication type:

Article