Works matching IS 03051048 AND DT 2016 AND VI 44 AND IP 15

Results: 39

Architectural proteins Pita, Zw5,and ZIPIC contain homodimerization domain and support specific long-range interactions in Drosophila.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7228, doi. 10.1093/nar/gkw371

By:

Zolotarev, Nikolay;
Fedotova, Anna;
Kyrchanova, Olga;
Bonchuk, Artem;
Penin, Aleksey A.;
Lando, Andrey S.;
Eliseeva, Irina A.;
Kulakovskiy, Ivan V.;
Maksimenko, Oksana;
Georgiev, Pavel

Publication type:

Article

Integrative structural analysis of the UTPB complex, an early assembly factor for eukaryotic small ribosomal subunits.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7475, doi. 10.1093/nar/gkw562

By:

Cheng Zhang;
Qi Sun;
Rongchang Chen;
Xining Chen;
Jinzhong Lin;
Keqiong Ye

Publication type:

Article

HMGN proteins modulate chromatin regulatory sites and gene expression during activation of naïve B cells.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7144, doi. 10.1093/nar/gkw323

By:

Shaofei Zhang;
Zhu, Iris;
Tao Deng;
Furusawa, Takashi;
Rochman, Mark;
Vacchio, Melanie S.;
Bosselut, Remy;
Yamane, Arito;
Casellas, Rafael;
Landsman, David;
Bustin, Michael

Publication type:

Article

A genome-wide approach for detecting novel insertion-deletion variants of mid-range size.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 1, doi. 10.1093/nar/gkw481

By:

Xia, Li C.;
Sakshuwong, Sukolsak;
Hopmans, Erik S.;
Bell, John M.;
Grimes, Susan M.;
Siegmund, David O.;
Ji, Hanlee P.;
Zhang, Nancy R.

Publication type:

Article

Genome-wide analysis of single non-templated nucleotides in plant endogenous siRNAs and miRNAs.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7395, doi. 10.1093/nar/gkw457

By:

Wang, Feng;
Johnson, Nathan R.;
Coruh, Ceyda;
Axtell, Michael J.

Publication type:

Article

Annexin A2 facilitates endocytic trafficking of antisense oligonucleotides.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7314, doi. 10.1093/nar/gkw595

By:

Shiyu Wang;
Hong Sun;
Tanowitz, Michael;
Xue-hai Liang;
Crooke, Stanley T.

Publication type:

Article

The RNA-binding protein TTP is a global post-transcriptional regulator of feedback control in inflammation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7418, doi. 10.1093/nar/gkw474

By:

Tiedje, Christopher;
Diaz-Muñoz, Manuel D.;
Trulley, Philipp;
Ahlfors, Helena;
Laaß, Kathrin;
Blackshear, Perry J.;
Turner, Martin;
Gaestel, Matthias

Publication type:

Article

HOXA1 binds RBCK1/HOIL-1 and TRAF2 and modulates the TNF/NF-κB pathway in a transcription-independent manner.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7331, doi. 10.1093/nar/gkw606

By:

Taminiau, Arnaud;
Draime, Amandine;
Tys, Janne;
Lambert, Barbara;
Vandeputte, Julie;
Nguyen, Nathan;
Renard, Patricia;
Geerts, Dirk;
Rezsöhazy, René

Publication type:

Article

Elucidation of transcriptome-wide microRNA binding sites in human cardiac tissues by Ago2 HITS-CLIP.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7120, doi. 10.1093/nar/gkw640

By:

Spengler, Ryan M.;
Xiaoming Zhang;
Congsheng Cheng;
McLendon, Jared M.;
Skeie, Jessica M.;
Johnson, Frances L.;
Davidson, Beverly L.;
Boudreau, Ryan L.

Publication type:

Article

Multiplexed miRNA northern blots via hybridization chain reaction.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 1, doi. 10.1093/nar/gkw503

By:

Schwarzkopf, Maayan;
Pierce, Niles A.

Publication type:

Article

Cooperation between SAGA and SWI/SNF complexes is required for efficient transcriptional responses regulated by the yeast MAPK Slt2.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7159, doi. 10.1093/nar/gkw324

By:

Sanz, Ana Belén;
García, Raúl;
Rodríguez-Peña, José Manuel;
Nombela, César;
Arroyo, Javier

Publication type:

Article

Systematic analysis of plant mitochondrial and chloroplast small RNAs suggests organelle-specific mRNA stabilization mechanisms.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7406, doi. 10.1093/nar/gkw466

By:

Ruwe, Hannes;
Wang, Gongwei;
Gusewski, Sandra;
Schmitz-Linneweber, Christian

Publication type:

Article

Perpetuating the homing endonuclease life cycle: identification of mutations that modulate and change I-TevI cleavage preference.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7350, doi. 10.1093/nar/gkw614

By:

Roy, Alexander C.;
Wilson, Geoffrey G.;
Edgell, David R.

Publication type:

Article

The structure and duplex context of DNA interstrand crosslinks affects the activity of DNA polymerase η.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7281, doi. 10.1093/nar/gkw485

By:

Roy, Upasana;
Mukherjee, Shivam;
Sharma, Anjali;
Frank, Ekaterina G.;
Schärer, Orlando D.

Publication type:

Article

Molecular events during translocation and proofreading extracted from 200 static structures of DNA polymerase.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7457, doi. 10.1093/nar/gkw555

By:

Zhong Ren

Publication type:

Article

Cooperative stabilization of Mycobacterium tuberculosis rrnAP3 promoter open complexes by RbpA and CarD.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7304, doi. 10.1093/nar/gkw577

By:

Rammohan, Jayan;
Manzano, Ana Ruiz;
Garner, Ashley L.;
Prusa, Jerome;
Stallings, Christina L.;
Galburt, Eric A.

Publication type:

Article

Structural insight into DNA-assembled oligochromophores: crystallographic analysis of pyrene- and phenanthrene-modified DNA in complex with BpuJI endonuclease.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7079, doi. 10.1093/nar/gkw644

By:

Probst, Markus;
Aeschimann, Walter;
Chau, Thi T. H.;
Langenegger, Simon M.;
Stocker, Achim;
Häner, Robert

Publication type:

Article

The mechanism of ϕC31 integrase directionality: experimental analysis and computational modelling.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7360, doi. 10.1093/nar/gkw616

By:

Pokhilko, Alexandra;
Jia Zhao;
Ebenhöh, Oliver;
Smith, Margaret C. M.;
Stark, W. Marshall;
Colloms, Sean D.

Publication type:

Article

Cas9-assisted recombineering in C. elegans: genome editing using in vivo assembly of linear DNAs.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 1, doi. 10.1093/nar/gkw502

By:

Paix, Alexandre;
Schmidt, Helen;
Seydoux, Geraldine

Publication type:

Article

eIF1A/eIF5B interaction network and its functions in translation initiation complex assembly and remodeling.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7441, doi. 10.1093/nar/gkw552

By:

Nag, Nabanita;
Kai Ying Lin;
Edmonds, Katherine A.;
Jielin Yu;
Nadkarni, Devika;
Marintcheva, Boriana;
Marintchev, Assen

Publication type:

Article

Cyclic mismatch binding ligand CMBL4 binds to the 5′-T-3′/5′-GG-3′ site by inducing the flipping out of thymine base.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7090, doi. 10.1093/nar/gkw672

By:

Mukherjee, Sanjukta;
Dohno, Chikara;
Asano, Kaori;
Nakatani, Kazuhiko

Publication type:

Article

Telomeric repeat silencing in germ cells is essential for early development in Drosophila.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7509, doi. 10.1093/nar/gkw489

By:

Morgunova, Valeriya;
Akulenko, Natalia;
Radion, Elizaveta;
Olovnikov, Ivan;
Abramov, Yuri;
Olenina, Ludmila V.;
Shpiz, Sergey;
Kopytova, Daria V.;
Georgieva, Sofia G.;
Kalmykova, Alla

Publication type:

Article

The CRISPR RNA-guided surveillance complex in Escherichia coli accommodates extended RNA spacers.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7385, doi. 10.1093/nar/gkw421

By:

Luo, Michelle L.;
Jackson, Ryan N.;
Denny, Steven R.;
Tokmina-Lukaszewska, Monika;
Maksimchuk, Kenneth R.;
Lin, Wayne;
Bothner, Brian;
Wiedenheft, Blake;
Beisel, Chase L.

Publication type:

Article

Insight into G-quadruplex-hemin DNAzyme/RNAzyme: adjacent adenine as the intramolecular species for remarkable enhancement of enzymatic activity.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7373, doi. 10.1093/nar/gkw634

By:

Wang Li;
Yong Li;
Zhuoliang Liu;
Bin Lin;
Haibo Yi;
Feng Xu;
Zhou Nie;
Shouzhuo Yao

Publication type:

Article

Methylation of histone H4 lysine 20 by PR-Set7 ensures the integrity of late replicating sequence domains in Drosophila.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7204, doi. 10.1093/nar/gkw333

By:

Yulong Li;
Armstrong, Robin L.;
Duronio, Robert J.;
MacAlpine, David M.

Publication type:

Article

Setd1a and NURF mediate chromatin dynamics and gene regulation during erythroid lineage commitment and differentiation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7173, doi. 10.1093/nar/gkw327

By:

Ying Li;
Schulz, Vincent P.;
Changwang Deng;
Guangyao Li;
Yong Shen;
Tusi, Betsabeh K.;
Ma, Gina;
Stees, Jared;
Yi Qiu;
Steiner, Laurie A.;
Lei Zhou;
Keji Zhao;
Bungert, Jörg;
Gallagher, Patrick G.;
Huang, Suming

Publication type:

Article

Insertion sequence-caused large-scale rearrangements in the genome of Escherichia coli.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7109, doi. 10.1093/nar/gkw647

By:

Lee, Heewook;
Doak, Thomas G.;
Popodi, Ellen;
Foster, Patricia L.;
Tang, Haixu

Publication type:

Article

Post-ExSELEX stabilization of an unnatural-base DNA aptamer targeting VEGF<sub>165</sub> toward pharmaceutical applications.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7487, doi. 10.1093/nar/gkw619

By:

Michiko Kimoto;
Mana Nakamura;
Ichiro Hirao

Publication type:

Article

In vivo evidence for translesion synthesis by the replicative DNA polymerase δ.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7242, doi. 10.1093/nar/gkw439

By:

Kouji Hirota;
Masataka Tsuda;
Mohiuddin;
Toshiki Tsurimoto;
Cohen, Isadora S.;
Livneh, Zvi;
Kaori Kobayashi;
Takeo Narita;
Kana Nishihara;
Junko Murai;
Shigenori Iwai;
Guilbaud, Guillaume;
Sale, Julian E.;
Shunichi Takeda

Publication type:

Article

Single molecule microscopy reveals mechanistic insight into RNA polymerase II preinitiation complex assembly and transcriptional activity.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7132, doi. 10.1093/nar/gkw321

By:

Horn, Abigail E.;
Kugel, Jennifer F.;
Goodrich, James A.

Publication type:

Article

Detection and visualization of differential splicing in RNA-Seq data with JunctionSeq.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 1, doi. 10.1093/nar/gkw501

By:

Hartley, Stephen W.;
Mullikin, James C.

Publication type:

Article

A part toolbox to tune genetic expression in Bacillus subtilis.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7495, doi. 10.1093/nar/gkw624

By:

Guiziou, Sarah;
Sauveplane, Vincent;
Hung-Ju Chang;
Clerté, Caroline;
Declerck, Nathalie;
Jules, Matthieu;
Bonnet, Jerome

Publication type:

Article

DNA compaction by the bacteriophage protein Cox studied on the single DNA molecule level using nanofluidic channels.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7219, doi. 10.1093/nar/gkw352

By:

Frykholm, Karolin;
Berntsson, Ronnie Per-Arne;
Claesson, Magnus;
Battice, Laura de;
Odegrip, Richard;
Stenmark, Pål;
Westerlund, Fredrik

Publication type:

Article

An increase in negative supercoiling in bacteria reveals topology-reacting gene clusters and a homeostatic response mediated by the DNA topoisomerase I gene.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7292, doi. 10.1093/nar/gkw602

By:

Ferrándiz, María-José;
Martín-Galiano, Antonio J.;
Arnanz, Cristina;
Camacho-Soguero, Isabel;
Tirado-Vélez, José-Manuel;
de la Campa, Adela G.

Publication type:

Article

Establishment of a promoter-based chromatin architecture on recently replicated DNA can accommodate variable inter-nucleosome spacing.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7189, doi. 10.1093/nar/gkw331

By:

Fennessy, Ross T.;
Owen-Hughes, Tom

Publication type:

Article

Asymmetric exponential amplification reaction on a toehold/biotin featured template: an ultrasensitive and specific strategy for isothermal microRNAs analysis.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 1, doi. 10.1093/nar/gkw504

By:

Jun Chen;
Xueqing Zhou;
Yingjun Ma;
Xiulian Lin;
Zong Dai;
Xiaoyong Zou

Publication type:

Article

Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7007, doi. 10.1093/nar/gkw530

By:

Atkins, John F.;
Loughran, Gary;
Bhatt, Pramod R.;
Firth, Andrew E.;
Baranov, Pavel V.

Publication type:

Article

Widespread transcriptional gene inactivation initiated by a repair intermediate of 8-oxoguanine.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7267, doi. 10.1093/nar/gkw473

By:

Allgayer, Julia;
Kitsera, Nataliya;
Bartelt, Solveig;
Epe, Bernd;
Khobta, Andriy

Publication type:

Article

Free energy analysis and mechanism of base pair stacking in nicked DNA.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 15, p. 7100, doi. 10.1093/nar/gkw607

By:

Häse, Florian;
Zacharias, Martin

Publication type:

Article