Works matching IS 03051048 AND DT 2016 AND VI 44 AND IP 14

Results: 44

Corrigendum.

Published in:: Nucleic Acids Research, 2016, v. 44, n. 14, p. 7006, doi. 10.1093/nar/gkw379
Publication type:: Article

Blue light-mediated transcriptional activation and repression of gene expression in bacteria.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6994, doi. 10.1093/nar/gkw548

By:

Jayaraman, Premkumar;
Devarajan, Kavya;
Tze Kwang Chua;
Hanzhong Zhang;
Gunawan, Erry;
Chueh Loo Poh

Publication type:

Article

Structural basis of thiol-based regulation of formaldehyde detoxification in H. influenzae by a MerR regulator with no sensor region.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6981, doi. 10.1093/nar/gkw543

By:

Cou?nago, Rafael M.;
Chen, Nathan H.;
Chiung-Wen Chang;
Djoko, Karrera Y.;
McEwan, Alastair G.;
Kobe, Bostjan

Publication type:

Article

Structural and functional characterization of KEOPS dimerization by Pcc1 and its role in t6A biosynthesis.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6971, doi. 10.1093/nar/gkw542

By:

Wan, Leo C. K.;
Pillon, Monica C.;
Thevakumaran, Neroshan;
Yulong Sun;
Chakrabartty, Avi;
Guarné, Alba;
Kurinov, Igor;
Durocher, Daniel;
Sicheri, Frank

Publication type:

Article

Changes in conformational dynamics of basic side chains upon protein-DNA association.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6961, doi. 10.1093/nar/gkw531

By:

Esadze, Alexandre;
Chuanying Chen;
Zandarashvili, Levani;
Roy, Sourav;
Pettitt, B. Montgometry;
Iwahara, Junji

Publication type:

Article

YB-1 regulates tiRNA-induced Stress Granule formation but not translational repression.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6949, doi. 10.1093/nar/gkw418

By:

Lyons, Shawn M.;
Achorn, Chris;
Kedersha, Nancy L.;
Anderson, Paul J.;
Ivanov, Pavel

Publication type:

Article

Protection against deleterious nitrogen compounds: role of σS-dependent small RNAs encoded adjacent to sdiA.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6935, doi. 10.1093/nar/gkw404

By:

Yue Hao;
Updegrove, Taylor B.;
Livingston, Natasha N.;
Storz, Gisela

Publication type:

Article

Rational engineering of the Neurospora VS ribozyme to allow substrate recognition via different kissing-loop interactions.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6924, doi. 10.1093/nar/gkw401

By:

Lacroix-Labonté, Julie;
Girard, Nicolas;
Dagenais, Pierre;
Legault, Pascale

Publication type:

Article

sRNA roles in regulating transcriptional regulators: Lrp and SoxS regulation by sRNAs.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6907, doi. 10.1093/nar/gkw358

By:

Hyun-Jung Lee;
Susan Gottesman

Publication type:

Article

Selectivity for strand-transfer over 3-processing and susceptibility to clinical resistance of HIV-1 integrase inhibitors are driven by key enzyme-DNA interactions in the active site.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6896, doi. 10.1093/nar/gkw592

By:

Métifiot, Mathieu;
Johnson, Barry C.;
Kiselev, Evgeny;
Marler, Laura;
Xue Zhi Zhao;
Burke Jr, Terrence R.;
Marchand, Christophe;
Hughes, Stephen H.;
Pommier, Yves

Publication type:

Article

Biochemical and genetic analysis of the role of the viral polymerase in enterovirus recombination.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6883, doi. 10.1093/nar/gkw567

By:

Woodman, Andrew;
Arnold, Jamie J.;
Cameron, Craig E.;
Evans, David J.

Publication type:

Article

SLIRP stabilizes LRPPRC via an RRM-PPR protein interface.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6868, doi. 10.1093/nar/gkw575

By:

Spåhr, Henrik;
Rozanska, Agata;
Xinping Li;
Atanassov, Ilian;
Lightowlers, Robert N.;
Chrzanowska-Lightowlers, Zofia M. A.;
Rackham, Oliver;
Larsson, Nils-Göran

Publication type:

Article

Multiple P-TEFbs cooperatively regulate the release of promoter-proximally paused RNA polymerase II.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6853, doi. 10.1093/nar/gkw571

By:

Xiaodong Lu;
Xinxing Zhu;
You Li;
Min Liu;
Bin Yu;
Yu Wang;
Rao, Muhua;
Haiyang Yang;
Kai Zhou;
Yao Wang;
Yanheng Chen;
Meihua Chen;
Songkuan Zhuang;
Lin-Feng Chen;
Runzhong Liu;
Ruichuan Chen

Publication type:

Article

Distinct types of translation termination generate substrates for ribosome-associated quality control.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6840, doi. 10.1093/nar/gkw566

By:

Shcherbik, Natalia;
Chernova, Tatiana A.;
Chernoff, Yury O.;
Pestov, Dimitri G.

Publication type:

Article

Experimental single-strain mobilomics reveals events that shape pathogen emergence.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6830, doi. 10.1093/nar/gkw601

By:

Schoeniger, Joseph S.;
Hudson, Corey M.;
Bent, Zachary W.;
Sinha, Anupama;
Williams, Kelly P.

Publication type:

Article

Global intron retention mediated gene regulation during CD4+ T cell activation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6817, doi. 10.1093/nar/gkw591

By:

Ting Ni;
Wenjing Yang;
Miao Han;
Yubo Zhang;
Ting Shen;
Hongbo Nie;
Zhihui Zhou;
Yalei Dai;
Yanqin Yang;
Poching Liu;
Kairong Cui;
Zhouhao Zeng;
Yi Tian;
Bin Zhou;
Gang Wei;
Keji Zhao;
Weiqun Peng;
Jun Zhu

Publication type:

Article

FANCJ is essential to maintain microsatellite structure genome-wide during replication stress.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6803, doi. 10.1093/nar/gkw433

By:

Barthelemy, Joanna;
Hanenberg, Helmut;
Leffak, Michael

Publication type:

Article

Sen1, the yeast homolog of human senataxin, plays a more direct role than Rad26 in transcription coupled DNA repair.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6794, doi. 10.1093/nar/gkw428

By:

Wentao Li;
Selvam, Kathiresan;
Rahman, Sheikh A.;
Shisheng Li

Publication type:

Article

Bromodeoxyuridine does not contribute to sister chromatid exchange events in normal or Bloom syndrome cells.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6787, doi. 10.1093/nar/gkw422

By:

van Wietmarschen, Niek;
Lansdorp, Peter M.

Publication type:

Article

Dual daughter strand incision is processive and increases the efficiency of DNA mismatch repair.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6770, doi. 10.1093/nar/gkw411

By:

Hermans, Nicolaas;
Laffeber, Charlie;
Cristov?ao, Michele;
Artola-Borán, Mariela;
Mardenborough, Yannicka;
Ikpa, Pauline;
Jaddoe, Aruna;
Winterwerp, Herrie H. K.;
Wyman, Claire;
Jiricny, Josef;
Kanaar, Roland;
Friedhoff, Peter;
Lebbink, Joyce H. G.

Publication type:

Article

Single base resolution analysis of 5-hydroxymethylcytosine in 188 human genes: implications for hepatic gene expression.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6756, doi. 10.1093/nar/gkw316

By:

Ivanov, Maxim;
Kals, Mart;
Lauschke, Volker;
Barragan, Isabel;
Ewels, Philip;
Käller, Max;
Axelsson, Tomas;
Lehtiö, Janne;
Milani, Lili;
Ingelman-Sundberg, Magnus

Publication type:

Article

ISL1 and JMJD3 synergistically control cardiac differentiation of embryonic stem cells.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6741, doi. 10.1093/nar/gkw301

By:

Yang Wang;
Yuejiao Li;
Chen Guo;
Qin Lu;
Weiping Wang;
Zhuqing Jia;
Ping Chen;
Kangtao Ma;
Reinberg, Danny;
Chunyan Zhou

Publication type:

Article

A universal transcription pause sequence is an element of initiation factor σ70-dependent pausing.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6732, doi. 10.1093/nar/gkw285

By:

Bird, Jeremy G.;
Strobel, Eric J.;
Roberts, Jeffrey W.

Publication type:

Article

Jointly characterizing epigenetic dynamics across multiple human cell types.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6721, doi. 10.1093/nar/gkw278

By:

Yu Zhang;
Lin An;
Feng Yue;
Hardison, Ross C.

Publication type:

Article

Transcript degradation and noise of small RNA-controlled genes in a switch activated network in Escherichia coli.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6707, doi. 10.1093/nar/gkw273

By:

Arbel-Goren, Rinat;
Tal, Asaf;
Parasar, Bibudha;
Dym, Alvah;
Costantino, Nina;
Muñoz-García, Javier;
Court, Donald L.;
Stavans, Joel

Publication type:

Article

Transcription facilitates sister chromatid cohesion on chromosomal arms.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6676, doi. 10.1093/nar/gkw252

By:

Bhardwaj, Shweta;
Schlackow, Margarita;
Rabajdova, Miroslava;
Gullerova, Monika

Publication type:

Article

The MazF-regulon: a toolbox for the post-transcriptional stress response in Escherichia coli.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6660, doi. 10.1093/nar/gkw115

By:

Sauert, Martina;
Wolfinger, Michael T.;
Vesper, Oliver;
Müller, Christian;
Byrgazov, Konstantin;
Moll, Isabella

Publication type:

Article

Identification of consensus binding sites clarifies FMRP binding determinants.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6649, doi. 10.1093/nar/gkw593

By:

Anderson, Bart R.;
Chopra, Pankaj;
Suhl, Joshua A.;
Warren, Stephen T.;
Bassell, Gary J.

Publication type:

Article

Comprehensive analysis of high-throughput screens with HiTSeekR.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6639, doi. 10.1093/nar/gkw554

By:

List, Markus;
Schmidt, Steffen;
Christiansen, Helle;
Rehmsmeier, Marc;
Qihua Tan;
Mollenhauer, Jan;
Baumbach, Jan

Publication type:

Article

The role of repressor kinetics in relief of transcriptional interference between convergent promoters.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6625, doi. 10.1093/nar/gkw600

By:

Nan Hao;
Palmer, Adam C.;
Ahlgren-Berg, Alexandra;
Shearwin, Keith E.;
Dodd, Ian B.

Publication type:

Article

NCBI prokaryotic genome annotation pipeline.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6614, doi. 10.1093/nar/gkw569

By:

Tatusova, Tatiana;
DiCuccio, Michael;
Badretdin, Azat;
Chetvernin, Vyacheslav;
Nawrocki, Eric P.;
Zaslavsky, Leonid;
Lomsadze, Alexandre;
Pruitt, Kim D.;
Borodovsky, Mark;
Ostell, James

Publication type:

Article

Conformational selection and dynamic adaptation upon linker histone binding to the nucleosome.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6599, doi. 10.1093/nar/gkw514

By:

Öztürk, Mehmet Ali;
Pachov, Georgi V.;
Wade, Rebecca C.;
Cojocaru, Vlad

Publication type:

Article

Novel small molecules potentiate premature termination codon readthrough by aminoglycosides.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6583, doi. 10.1093/nar/gkw638

By:

Baradaran-Heravi, Alireza;
Balgi, Aruna D.;
Zimmerman, Carla;
Kunho Choi;
Shidmoossavee, Fahimeh S.;
Tan, Jason S.;
Bergeaud, Célia;
Krause, Alexandra;
Flibotte, Stéphane;
Yoko Shimizu;
Anderson, Hilary J.;
Mouly, Vincent;
Jan, Eric;
Pfeifer, Tom;
Jaquith, James B.;
Roberge, Michel

Publication type:

Article

Mechanical properties of DNA origami nanoassemblies are determined by Holliday junction mechanophores.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6574, doi. 10.1093/nar/gkw610

By:

Shrestha, Prakash;
Tomoko Emura;
Koirala, Deepak;
Yunxi Cui;
Kumi Hidaka;
Maximuck, William J.;
Masayuki Endo;
Hiroshi Sugiyama;
Hanbin Mao

Publication type:

Article

The use of an artificial nucleotide for polymerase-based recognition of carcinogenic O6-alkylguanine DNA adducts.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6564, doi. 10.1093/nar/gkw589

By:

Wyss, Laura A.;
Nilforoushan, Arman;
Williams, David M.;
Marx, Andreas;
Sturla, Shana J.

Publication type:

Article

Splice-switching antisense oligonucleotides as therapeutic drugs.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6549, doi. 10.1093/nar/gkw533

By:

Havens, Mallory A.;
Hastings, Michelle L.

Publication type:

Article

The delivery of therapeutic oligonucleotides.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6518, doi. 10.1093/nar/gkw236

By:

Juliano, Rudolph L.

Publication type:

Article

Transcriptional gene silencing in humans.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 6505, doi. 10.1093/nar/gkw139

By:

Weinberg, Marc S.;
Morris, Kevin V.

Publication type:

Article

Protection of CpG islands from DNA methylation is DNA-encoded and evolutionarily conserved.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 3393, doi. 10.1093/nar/gkw258

By:

Long, Hannah K.;
King, Hamish W.;
Patient, Roger K.;
Odom, Duncan T.;
Klose, Robert J.

Publication type:

Article

CasHRA (Cas9-facilitated Homologous Recombination Assembly) method of constructing megabase-sized DNA.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 1, doi. 10.1093/nar/gkw475

By:

Jianting Zhou;
Ronghai Wu;
Xiaoli Xue;
Zhongjun Qin

Publication type:

Article

Accurate detection for a wide range of mutation and editing sites of microRNAs from small RNA high-throughput sequencing profiles.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 1, doi. 10.1093/nar/gkw471

By:

Yun Zheng;
Bo Ji;
Renhua Song;
Shengpeng Wang;
Ting Li;
Xiaotuo Zhang;
Kun Chen;
Tianqing Li;
Jinyan Li

Publication type:

Article

Examining cooperative binding of Sox2 on DC5 regulatory element upon complex formation with Pax6 through excess electron transfer assay.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 1, doi. 10.1093/nar/gkw478

By:

Saha, Abhijit;
Seiichiro Kizaki;
De, Debojyoti;
Masayuki Endo;
Kyeong Kyu Kim;
Hiroshi Sugiyama

Publication type:

Article

Robust lineage reconstruction from high-dimensional single-cell data.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 1, doi. 10.1093/nar/gkw452

By:

Giecold, Gregory;
Marco, Eugenio;
Garcia, Sara P.;
Trippa, Lorenzo;
Guo-Cheng Yuan

Publication type:

Article

Engineering a robust DNA split proximity circuit with minimized circuit leakage.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 14, p. 1, doi. 10.1093/nar/gkw447

By:

Yan Shan Ang;
Rachel Tong;
Lin-Yue Lanry Yung

Publication type:

Article