Works matching IS 03051048 AND DT 2016 AND VI 44 AND IP 13

Results: 45

Copy number analysis of whole-genome data using BIC-seq2 and its application to detection of cancer susceptibility variants.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6274, doi. 10.1093/nar/gkw491

By:

Ruibin Xi;
Semin Lee;
Yuchao Xia;
Tae-Min Kim;
Park, Peter J.

Publication type:

Article

Synthesis, base pairing and structure studies of geranylated RNA.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6036, doi. 10.1093/nar/gkw544

By:

Rui Wang;
Ranganathan, Srivathsan V.;
Basanta-Sanchez, Maria;
Chen, Alan;
Sheng, Jia;
Haruehanroengra, Phensinee

Publication type:

Article

G-rich telomeric and ribosomal DNA sequences from the fission yeast genome form stable G-quadruplex DNA structures in vitroand are unwound by the Pfh1 DNA helicase.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6213, doi. 10.1093/nar/gkw349

By:

Wallgren, Marcus;
Mohammad, Jani B.;
Kok-Phen Yan;
Pourbozorgi-Langroudi, Parham;
Ebrahimi, Mahsa;
Sabouri, Nasim

Publication type:

Article

Identification and characterization of DNA sequences that prevent glucocorticoid receptor binding to nearby response elements.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6142, doi. 10.1093/nar/gkw203

By:

Telorac, Jonas;
Prykhozhij, Sergey V.;
Schöne, Stefanie;
Meierhofer, David;
Sauer, Sascha;
Thomas-Chollier, Morgane;
Meijsing, Sebastiaan H.

Publication type:

Article

Role of the RAD51-SWI5-SFR1 Ensemble in homologous recombination.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6242, doi. 10.1093/nar/gkw375

By:

Guan-Chin Su;
Hsin-Yi Yeh;
Sheng-Wei Lin;
Chan-I Chung;
Yu-Shan Huang;
Yi-Chung Liu;
Ping-Chiang Lyu;
Chi, Peter

Publication type:

Article

Differential distribution improves gene selection stability and has competitive classification performance for patient survival.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 1, doi. 10.1093/nar/gkw444

By:

Strbenac, Dario;
Mann, Graham J.;
Yang, Jean Y. H.;
Ormerod, John T.

Publication type:

Article

Bayesian Markov models consistently outperform PWMs at predicting motifs in nucleotide sequences.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6055, doi. 10.1093/nar/gkw521

By:

Siebert, Matthias;
Söding, Johannes

Publication type:

Article

Loss of the mitochondrial protein-only ribonuclease P complex causes aberrant tRNA processing and lethality in Drosophila.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6409, doi. 10.1093/nar/gkw338

By:

Sen, Aditya;
Karasik, Agnes;
Shanmuganathan, Aranganathan;
Mirkovic, Elena;
Koutmos, Markos;
Cox, Rachel T.

Publication type:

Article

Mechanisms of transcription factor evolution in Metazoa.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6287, doi. 10.1093/nar/gkw492

By:

Schmitz, Jonathan F.;
Zimmer, Fabian;
Bornberg-Bauer, Erich

Publication type:

Article

The ribosome prohibits the G•U wobble geometry at the first position of the codon--anticodon helix.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6434, doi. 10.1093/nar/gkw431

By:

Rozov, Alexey;
Westhof, Eric;
Yusupov, Marat;
Yusupova, Gulnara

Publication type:

Article

A long non-coding RNA, APOA4-AS, regulates APOA4 expression depending on HuR in mice.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6423, doi. 10.1093/nar/gkw341

By:

Wangshu Qin;
Xinzhi Li;
Liwei Xie;
Sha Li;
Jianan Liu;
Linna Jia;
Xue Dong;
Xiaomeng Ren;
Junjie Xiao;
Changqing Yang;
Yifa Zhou;
Zheng Chen

Publication type:

Article

Corrigendum.

Published in:: Nucleic Acids Research, 2016, v. 44, n. 13, p. 6503, doi. 10.1093/nar/gkw243
Publication type:: Article

Quantitative modeling of gene expression using DNA shape features of binding sites.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 1, doi. 10.1093/nar/gkw446

By:

Pei-Chen Peng;
Sinha, Saurabh

Publication type:

Article

Identification of a region in the coiled-coil domain of Smc3 that is essential for cohesin activity.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6309, doi. 10.1093/nar/gkw539

By:

Orgil, Ola;
Mor, Hadar;
Matityahu, Avi;
Onn, Itay

Publication type:

Article

microRNA editing in seed region aligns with cellular changes in hypoxic conditions.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6298, doi. 10.1093/nar/gkw532

By:

Nigita, Giovanni;
Acunzo, Mario;
Romano, Giulia;
Veneziano, Dario;
Lagana, Alessandro;
Vitiello, Marika;
Wernicke, Dorothee;
Ferro, Alfredo;
Croce, Carlo M.

Publication type:

Article

The progression of replication forks at natural replication barriers in live bacteria.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6262, doi. 10.1093/nar/gkw397

By:

Moolman, M. Charl;
Krishnan, Sriram Tiruvadi;
Kerssemakers, Jacob W. J.;
de Leeuw, Roy;
Lorent, Vincent;
Sherratt, David J.;
Dekker, Nynke H.

Publication type:

Article

Endonucleolytic cleavages by RNase E generate the mature 3' termini of the three proline tRNAs in Escherichia coli.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6350, doi. 10.1093/nar/gkw517

By:

Mohanty, Bijoy K.;
Petree, Jessica R.;
Kushner, Sidney R.

Publication type:

Article

Defining the multivalent functions of CTCF from chromatin state and three-dimensional chromatin interactions.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6200, doi. 10.1093/nar/gkw249

By:

Yiming Lu;
Guangyu Shan;
Jiguo Xue;
Changsheng Chen;
Chenggang Zhang

Publication type:

Article

Functional interplay between SA1 and TRF1 in telomeric DNA binding and DNA-DNA pairing.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6363, doi. 10.1093/nar/gkw518

By:

Jiangguo Lin;
Countryman, Preston;
Haijiang Chen;
Hai Pan;
Yanlin Fan;
Yunyun Jiang;
Kaur, Parminder;
Wang Miao;
Gurgel, Gisele;
Changjiang You;
Piehler, Jacob;
Kad, Neil M.;
Riehn, Robert;
Opresko, Patricia L.;
Smith, Susan;
Yizhi Jane Tao;
Hong Wang

Publication type:

Article

Adenosine to Inosine editing frequency controlled by splicing efficiency.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6398, doi. 10.1093/nar/gkw325

By:

Licht, Konstantin;
Kapoor, Utkarsh;
Mayrhofer, Elisa;
Jantsch, Michael F.

Publication type:

Article

Mapping DNA polymerase errors by single-molecule sequencing.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 1, doi. 10.1093/nar/gkw436

By:

Lee, David F.;
Lu, Jenny;
Seungwoo Chang;
Loparo, Joseph J.;
Xie, Xiaoliang S.

Publication type:

Article

The DDX6-4E-T interaction mediates translational repression and P-body assembly.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6318, doi. 10.1093/nar/gkw565

By:

Simpson, Anastasiia;
Vindry, Caroline;
Broomhead, Helen;
Benard, Marianne;
Ernoult-Lange, Michele;
Lee, Benjamin P.;
Harries, Lorna W.;
Weil, Dominique;
Standart, Nancy

Publication type:

Article

Understanding microRNA-mediated gene regulatory networks through mathematical modelling.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6019, doi. 10.1093/nar/gkw550

By:

Xin Lai;
Wolkenhauer, Olaf;
Vera, Julio

Publication type:

Article

Structure and function of human histone H3.Y nucleosome.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6127, doi. 10.1093/nar/gkw202

By:

Tomoya Kujirai;
Naoki Horikoshi;
Koichi Sato;
Kazumitsu Maehara;
Shinichi Machida;
Akihisa Osakabe;
Hiroshi Kimura;
Yasuyuki Ohkawa;
Hitoshi Kurumizaka

Publication type:

Article

Synergy between NMR measurements and MD simulations of protein/RNA complexes: application to the RRMs, the most common RNA recognition motifs.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6452, doi. 10.1093/nar/gkw438

By:

Krepl, Miroslav;
Clery, Antoine;
Blatter, Markus;
Allain, Frederic H. T.;
Sponer, Jiri

Publication type:

Article

Two p53 tetramers bind one consensus DNA response element.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6185, doi. 10.1093/nar/gkw215

By:

Kearns, Sinéad;
Lurz, Rudi;
Orlova, Elena V.;
Okorokov, Andrei L.

Publication type:

Article

Integrated transcriptomic and proteomic analyses of P. falciparumgametocytes: molecular insight into sex-specific processes and translational repression.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6087, doi. 10.1093/nar/gkw536

By:

Lasonder, Edwin;
Rijpma, Sanna R.;
van Schaijk, Ben C. L.;
Hoeijmakers, Wieteke A. M.;
Kensche, Philip R.;
Gresnigt, Mark S.;
Italiaander, Annet;
Vos, Martijn W.;
Woestenenk, Rob;
Bousema, Teun;
Mair, Gunnar R.;
Khan, Shahid M.;
Janse, Chris J.;
Bártfai, Richárd;
Sauerwein, Robert W.

Publication type:

Article

Sensitive and specific miRNA detection method using SplintR Ligase.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 1, doi. 10.1093/nar/gkw399

By:

Jin, Jingmin;
Vaud, Sophie;
Zhelkovsky, Alexander M.;
Posfai, Janos;
McReynolds, Larry A.

Publication type:

Article

TSCAN: Pseudo-time reconstruction and evaluation in single-cell RNA-seq analysis.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 10, doi. 10.1093/nar/gkw430

By:

Zhicheng Ji;
Hongkai Ji

Publication type:

Article

Structural and functional analyses of the archaeal tRNA m²G/m²<sub>2</sub> G10 methyltransferase aTrm11 provide mechanistic insights into site specificity of a tRNA methyltransferase that contains common RNA-binding modules.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6377, doi. 10.1093/nar/gkw561

By:

Akira Hirata;
Seiji Nishiyama;
Toshihiro Tamura;
Ayano Yamauchi;
Hiroyuki Hori

Publication type:

Article

A 10S galectin-3-U1 snRNP complex assembles into active spliceosomes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6391, doi. 10.1093/nar/gkw303

By:

Haudek, Kevin C.;
Voss, Patricia G.;
Wang, John L.;
Patterson, Ronald J.

Publication type:

Article

The histone chaperone Vps75 forms multiple oligomeric assemblies capable of mediating exchange between histone H3-H4 tetramers and Asf1-H3-H4 complexes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6157, doi. 10.1093/nar/gkw209

By:

Hammond, Colin M.;
Sundaramoorthy, Ramasubramanian;
Larance, Mark;
Lamond, Angus;
Stevens, Michael A.;
El-Mkami, Hassane;
Norman, David G.;
Owen-Hughes, Tom

Publication type:

Article

Chromatin condensation and recruitment of PHD finger proteins to histone H3K4me3 are mutually exclusive.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6102, doi. 10.1093/nar/gkw193

By:

Gatchalian, Jovylyn;
Gallardo, Carmen Mora;
Shinsky, Stephen A.;
Ospina, Ruben Rosas;
Liendo, Andrea Mansilla;
Krajewski, Krzysztof;
Klein, Brianna J.;
Andrews, Forest H.;
Strahl, Brian D.;
van Wely, Karel H. M.;
Kutateladze, Tatiana G.

Publication type:

Article

Integration of TP53, DREAM, MMB-FOXM1 and RB-E2F target gene analyses identifies cell cycle gene regulatory networks.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6070, doi. 10.1093/nar/gkw523

By:

Fischer, Martin;
Grossmann, Patrick;
Padi, Megha;
DeCaprio, James A.

Publication type:

Article

Post-translational control of genetic circuits using Potyvirusproteases.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6493, doi. 10.1093/nar/gkw537

By:

Fernandez-Rodriguez, Jesus;
Voigt, Christopher A.

Publication type:

Article

Promoter architecture and transcriptional regulation of Abf1-dependent ribosomal protein genes in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6113, doi. 10.1093/nar/gkw194

By:

Fermi, Beatrice;
Bosio, Maria Cristina;
Dieci, Giorgio

Publication type:

Article

Structure and possible function of a G-quadruplex in the long terminal repeat of the proviral HIV-1 genome.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6442, doi. 10.1093/nar/gkw432

By:

De Nicola, Beatrice;
Lech, Christopher J.;
Heddi, Brahim;
Regmi, Sagar;
Frasson, Ilaria;
Perrone, Rosalba;
Richter, Sara N.;
Anh Tuan Phan

Publication type:

Article

Probing the impact of chromatin conformation on genome editing tools.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6482, doi. 10.1093/nar/gkw524

By:

Xiaoyu Chen;
Rinsma, Marrit;
Janssen, Josephine M.;
Liu, Jin;
Maggio, Ignazio;
Gonςalves, Manuel A. F. V.

Publication type:

Article

Toward reliable biomarker signatures in the age of liquid biopsies - how to standardize the small RNA-Seq workflow.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 5995, doi. 10.1093/nar/gkw545

By:

Buschmann, Dominik;
Haberberger, Anna;
Kirchner, Benedikt;
Spornraft, Melanie;
Riedmaier, Irmgard;
Schelling, Gustav;
Pfaffl, Michael W.

Publication type:

Article

RNA Polymerase I and Fob1 contributions to transcriptional silencing at the yeast rDNA locus.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6173, doi. 10.1093/nar/gkw212

By:

Buck, Stephen W.;
Maqani, Nazif;
Matecic, Mirela;
Hontz, Robert D.;
Fine, Ryan D.;
Mingguang Li;
Smith, Jeffrey S.

Publication type:

Article

How far from the SNP may the causative genes be?

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6046, doi. 10.1093/nar/gkw500

By:

Brodie, Aharon;
Azaria, Johnathan Roy;
Ofran, Yanay

Publication type:

Article

Xpg limits the expansion of haematopoietic stem and progenitor cells after ionising radiation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6252, doi. 10.1093/nar/gkw376

By:

Avila, Alush I.;
Illing, Anett;
Becker, Friedrich;
Maerz, Lars D.;
Morita, Yohei;
Philipp, Melanie;
Burkhalter, Martin D.

Publication type:

Article

The stringent factor RelA adopts an open conformation on the ribosome to stimulate ppGpp synthesis.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6471, doi. 10.1093/nar/gkw470

By:

Arenz, Stefan;
Abdelshahid, Maha;
Sohmen, Daniel;
Payoe, Roshani;
Starosta, Agata L.;
Berninghausen, Otto;
Hauryliuk, Vasili;
Beckmann, Roland;
Wilson, Daniel N.

Publication type:

Article

A small protein inhibits proliferating cell nuclear antigen by breaking the DNA clamp.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6232, doi. 10.1093/nar/gkw351

By:

Altieri, Amanda S.;
Ladner, Jane E.;
Zhuo Li;
Robinson, Howard;
Sallman, Zahur F.;
Marino, John P.;
Kelman, Zvi

Publication type:

Article

RNA topoisomerase is prevalent in all domains of life and associates with polyribosomes in animals.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 13, p. 6335, doi. 10.1093/nar/gkw508

By:

Ahmad, Muzammil;
Yutong Xue;
Seung Kyu Lee;
Martindale, Jennifer L.;
Weiping Shen;
Wen Li;
Sige Zou;
Ciaramella, Maria;
Debat, Héléne;
Nadal, Marc;
Hongliang Zhang;
Quan Wang;
Fenfei Leng;
Grace Ee-Lu Siaw;
Hengyao Niu;
Pommier, Yves;
Gorospe, Myriam;
Tao-Shih Hsieh;
Yuk-Ching Tse-Dinh;
Dongyi Xu

Publication type:

Article