Works matching IS 03051048 AND DT 2016 AND VI 44 AND IP 12

Results: 42

Redundans: an assembly pipeline for highly heterozygous genomes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 1, doi. 10.1093/nar/gkw294

By:

Pryszcz, Leszek P.;
Gabaldón, Toni

Publication type:

Article

InPhaDel: integrative shotgun and proximity-ligation sequencing to phase deletions with single nucleotide polymorphisms.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 1, doi. 10.1093/nar/gkw281

By:

Patel, Anand;
Edge, Peter;
Selvaraj, Siddarth;
Bansal, Vikas;
Bafna, Vineet

Publication type:

Article

In depth analysis of the mechanism of action of metal-dependent sigma factors: characterization of CorE2 from Myxococcus xanthus.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5571, doi. 10.1093/nar/gkw150

By:

Javier Marcos-Torres, Francisco;
Pérez, Juana;
Gόmez-Santos, Nuria;
Moraleda-Muñoz, Aurelio;
Muñoz-Dorado, José

Publication type:

Article

Mitochondrial transcription termination factor 1 directs polar replication fork pausing.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5732, doi. 10.1093/nar/gkw302

By:

Yonghong Shi;
Posse, Viktor;
Xuefeng Zhu;
Hyvärinen, Anne K.;
Jacobs, Howard T.;
Falkenberg, Maria;
Gustafsson, Claes M.

Publication type:

Article

A fast and powerfulW-test for pairwise epistasis testing.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 1, doi. 10.1093/nar/gkw347

By:

Maggie Haitian Wang;
Rui Sun;
Junfeng Guo;
Haoyi Weng;
Jack Lee;
Inchi Hu;
Pak Chung Sham;
Benny Chung-Ying Zee

Publication type:

Article

CARGO: effective format-free compressed storage of genomic information.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 1, doi. 10.1093/nar/gkw318

By:

Roguski, Łukasz;
Ribeca, Paolo

Publication type:

Article

Repurposing the CRISPR-Cas9 system for targeted DNA methylation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5615, doi. 10.1093/nar/gkw159

By:

Vojta, Aleksandar;
Dobrinić, Paula;
Tadić, Vanja;
Bočkor, Luka;
Korać, Petra;
Julg, Boris;
Klasić, Marija;
Zoldoš, Vlatka

Publication type:

Article

Dynamic binding of replication protein a is required for DNA repair.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5758, doi. 10.1093/nar/gkw339

By:

Chen, Ran;
Subramanyam, Shyamal;
Elcock, Adrian H.;
Spies, Maria;
Wold, Marc S.

Publication type:

Article

Arabidopsis DNA polymerase ϵ recruits components of Polycomb repressor complex to mediate epigenetic gene silencing.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5597, doi. 10.1093/nar/gkw156

By:

del Olmo, Iván;
Lόpez, Juan A.;
Vázquez, Jesύs;
Raynaud, Cécile;
Piñeiro, Manuel;
Jarillo, Jośe A.

Publication type:

Article

Structure elucidation of the Pribnow box consensus promoter sequence by racemic DNA crystallography.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5936, doi. 10.1093/nar/gkw367

By:

Mandal, Pradeep K.;
Collie, Gavin W.;
Srivastava, Suresh C.;
Kauffmann, Brice;
Huc, Ivan

Publication type:

Article

The Hsp70 homolog Ssb and the 14-3-3 protein Bmh1 jointly regulate transcription of glucose repressed genes in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5629, doi. 10.1093/nar/gkw168

By:

Hübscher, Volker;
Mudholkar, Kaivalya;
Chiabudini, Marco;
Fitzke, Edith;
Wölfle, Tina;
Pfeifer, Dietmar;
Drepper, Friedel;
Warscheid, Bettina;
Rospert, Sabine

Publication type:

Article

Prediction of developmental chemical toxicity based on gene networks of human embryonic stem cells.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5515, doi. 10.1093/nar/gkw450

By:

Junko Yamane;
Sachiyo Aburatani;
Satoshi Imanishi;
Hiromi Akanuma;
Reiko Nagano;
Tsuyoshi Kato;
Hideko Sone;
Seiichiroh Ohsako;
Wataru Fujibuchi

Publication type:

Article

Modulating the Cascade architecture of a minimal Type I-F CRISPR-Cas system.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5872, doi. 10.1093/nar/gkw469

By:

Gleditzsch, Daniel;
Müller-Esparza, Hanna;
Pausch, Patrick;
Sharma, Kundan;
Dwarakanath, Srivatsa;
Urlaub, Henning;
Bange, Gert;
Randau, Lennart

Publication type:

Article

Inducible DamID systems for genomic mapping of chromatin proteins in Drosophila.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5646, doi. 10.1093/nar/gkw176

By:

Pindyurin, Alexey V.;
Pagie, Ludo;
Kozhevnikova, Elena N.;
van Arensbergen, Joris;
van Steensel, Bas

Publication type:

Article

Dysregulated signaling hubs of liver lipid metabolism reveal hepatocellular carcinoma pathogenesis.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5529, doi. 10.1093/nar/gkw462

By:

Sunjae Lee;
Mardinoglu, Adil;
Cheng Zhang;
Doheon Lee;
Nielsen, Jens

Publication type:

Article

Force regulated dynamics of RPA on a DNA fork.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5837, doi. 10.1093/nar/gkw187

By:

Kemmerich, Felix E.;
Daldrop, Peter;
Pinto, Cosimo;
Levikova, Maryna;
Cejka, Petr;
Seidel, Ralf

Publication type:

Article

Sequence-dependent nanometer-scale conformational dynamics of individual RecBCD–DNA complexes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5849, doi. 10.1093/nar/gkw445

By:

Carter, Ashley R.;
Seaberg, Maasa H.;
Hsiu-Fang Fan;
Gang Sun;
Wilds, Christopher J.;
Hung-Wen Li;
Perkins, Thomas T.

Publication type:

Article

Engineering and characterization of fluorogenic glycine riboswitches.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5983, doi. 10.1093/nar/gkw465

By:

Ketterer, Simon;
Gladis, Lukas;
Kozica, Adnan;
Meier, Matthias

Publication type:

Article

Physiological TLR5 expression in the intestine is regulated by differential DNA binding of Sp1/Sp3 through simultaneous Sp1 dephosphorylation and Sp3 phosphorylation by two different PKC isoforms.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5658, doi. 10.1093/nar/gkw189

By:

Thakur, Bhupesh Kumar;
Dasgupta, Nirmalya;
Ta, Atri;
Das, Santasabuj

Publication type:

Article

MGME1 processes flaps into ligatable nicks in concert with DNA polymerase γ during mtDNA replication.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5861, doi. 10.1093/nar/gkw468

By:

Uhler, Jay P.;
Thörn, Christian;
Nicholls, Thomas J.;
Matic, Stanka;
Milenkovic, Dusanka;
Gustafsson, Claes M.;
Falkenberg, Maria

Publication type:

Article

RNA folding pathways in stop motion.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5883, doi. 10.1093/nar/gkw239

By:

Bottaro, Sandro;
Gil-Ley, Alejandro;
Bussi, Giovanni

Publication type:

Article

Identification and characterization of an hnRNP E1 translational silencing motif.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5892, doi. 10.1093/nar/gkw241

By:

Brown, Andrew S.;
Mohanty, Bidyut K.;
Howe, Philip H.

Publication type:

Article

The structure of ends determines the pathway choice and Mre11 nuclease dependency of DNA double-strand break repair.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5689, doi. 10.1093/nar/gkw274

By:

Shuren Liao;
Tammaro, Margaret;
Hong Yan

Publication type:

Article

The effect of leaving groups on binding and reactivity in enzyme-free copying of DNA and RNA.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5504, doi. 10.1093/nar/gkw476

By:

Kervio, Eric;
Sosson, Marilyne;
Richert, Clemens

Publication type:

Article

Tetratricopeptide repeat factor XAB2 mediates the end resection step of homologous recombination.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5702, doi. 10.1093/nar/gkw275

By:

Onyango, David O.;
Howard, Sean M.;
Neherin, Kashfia;
Yanez, Diana A.;
Stark, Jeremy M.

Publication type:

Article

Two sets of RNAi components are required for heterochromatin formation in trans triggered by truncated transgenes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5908, doi. 10.1093/nar/gkw267

By:

Götz, Ulrike;
Marker, Simone;
Cheaib, Miriam;
Andresen, Karsten;
Shrestha, Simon;
Durai, Dilip A.;
Nordström, Karl J.;
Schulz, Marcel H.;
Simon, Martin

Publication type:

Article

An atlas of gene expression and gene co-regulation in the human retina.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5773, doi. 10.1093/nar/gkw486

By:

Pinelli, Michele;
Carissimo, Annamaria;
Cutillo, Luisa;
Ching-Hung Lai;
Mutarelli, Margherita;
Moretti, Maria Nicoletta;
Singh, Marwah Veer;
Karali, Marianthi;
Carrella, Diego;
Pizzo, Mariateresa;
Russo, Francesco;
Ferrari, Stefano;
Ponzin, Diego;
Angelini, Claudia;
Banfi, Sandro;
di Bernardo, Diego

Publication type:

Article

An accurate clone-based haplotyping method by overlapping pool sequencing.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 1, doi. 10.1093/nar/gkw284

By:

Cheng Li;
Changchang Cao;
Jing Tu;
Xiao Sun

Publication type:

Article

Poly(A)-binding proteins are required for microRNA-mediated silencing and to promote target deadenylation in C. elegans.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5924, doi. 10.1093/nar/gkw276

By:

Flamand, Mathieu N.;
Edlyn Wu;
Vashisht, Ajay;
Jannot, Guillaume;
Keiper, Brett D.;
Simard, Martin J.;
Wohlschlegel, James;
Duchaine, Thomas F.

Publication type:

Article

Translesion synthesis mechanisms depend on the nature of DNA damage in UV-irradiated human cells.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5717, doi. 10.1093/nar/gkw280

By:

Quinet, Annabel;
Jardim Martins, Davi;
Teixeira Vessoni, Alexandre;
Biard, Denis;
Sarasin, Alain;
Stary, Anne;
Martins Menck, Carlos Frederico

Publication type:

Article

Goldmine integrates information placing genomic ranges into meaningful biological contexts.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5550, doi. 10.1093/nar/gkw477

By:

Bhasin, Jeffrey M.;
Ting, Angela H.

Publication type:

Article

Entropy gives rise to topologically associating domains.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5540, doi. 10.1093/nar/gkw510

By:

Vasquez, Paula A.;
Hult, Caitlin;
Adalsteinsson, David;
Lawrimore, Josh;
Forest, Mark G.;
Bloom, Kerry

Publication type:

Article

The extended loops of ribosomal proteins uL4 and uL22 of Escherichia coli contribute to ribosome assembly and protein translation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5798, doi. 10.1093/nar/gkw493

By:

Lawrence, Marlon G.;
Shamsuzzaman, Md;
Kondopaka, Maithri;
Pascual, Clarence;
Zengel, Janice M.;
Lindahl, Lasse

Publication type:

Article

Allosteric communication between DNA-binding and light-responsive domains of diatom class I aureochromes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5957, doi. 10.1093/nar/gkw420

By:

Banerjee, Ankan;
Herman, Elena;
Serif, Manuel;
Maestre-Reyna, Manuel;
Hepp, Sebastian;
Pokorny, Richard;
Kroth, Peter G.;
Essen, Lars-Oliver;
Kottke, Tilman

Publication type:

Article

Z-DNA like’ fragments in RNA: a recurring structural motif with implications for folding, RNA/protein recognition and immune response.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5944, doi. 10.1093/nar/gkw388

By:

D’Ascenzo, Luigi;
Leonarski, Filip;
Vicens, Quentin;
Auffinger, Pascal

Publication type:

Article

Ribosome recycling defects modify the balance between the synthesis and assembly of specific subunits of the oxidative phosphorylation complexes in yeast mitochondria.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5785, doi. 10.1093/nar/gkw490

By:

Ostojić, Jelena;
Panozzo, Cristina;
Bourand-Plantefol, Alexa;
Herbert, Christopher J.;
Dujardin, Geneviève;
Bonnefoy, Nathalie

Publication type:

Article

Transcription is regulated by NusA:NusG interaction.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5971, doi. 10.1093/nar/gkw423

By:

Strauß, Martin;
Vitiello, Christal;
Schweimer, Kristian;
Gottesman, Max;
Rösch, Paul;
Knauer, Stefan H.

Publication type:

Article

Increased cytoplasmic TARDBP mRNA in affected spinal motor neurons in ALS caused by abnormal autoregulation of TDP-43.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5820, doi. 10.1093/nar/gkw499

By:

Akihide Koyama;
Akihiro Sugai;
Taisuke Kato;
Tomohiko Ishihara;
Atsushi Shiga;
Yasuko Toyoshima;
Misaki Koyama;
Takuya Konno;
Sachiko Hirokawa;
Akio Yokoseki;
Masatoyo Nishizawa;
Akiyoshi Kakita;
Hitoshi Takahashi;
Osamu Onodera

Publication type:

Article

A novel role for poly(C) binding proteins in programmed ribosomal frameshifting.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5491, doi. 10.1093/nar/gkw480

By:

Napthine, Sawsan;
Treffers, Emmely E.;
Bell, Susanne;
Goodfellow, Ian;
Ying Fang;
Firth, Andrew E.;
Snijder, Eric J.;
Brierley, Ian

Publication type:

Article

The human PMR1 endonuclease stimulates cell motility by down regulating miR-200 family microRNAs.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5811, doi. 10.1093/nar/gkw497

By:

Gu, Shan-Qing;
Gallego-Perez, Daniel;
McClory, Sean P.;
Shi, Junfeng;
Han, Joonhee;
James Lee, L.;
Schoenberg, Daniel R.

Publication type:

Article

Translocation and deletion breakpoints in cancer genomes are associated with potential non-B DNA-forming sequences.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5673, doi. 10.1093/nar/gkw261

By:

Bacolla, Albino;
Tainer, John A.;
Vasquez, Karen M.;
Cooper, David N.

Publication type:

Article

A role for human homologous recombination factors in suppressing microhomology-mediated end joining.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5743, doi. 10.1093/nar/gkw326

By:

Ahrabi, Sara;
Sarkar, Sovan;
Pfister, Sophia X.;
Pirovano, Giacomo;
Higgins, Geoff S.;
Porter, Andrew C. G.;
Humphrey, Timothy C.

Publication type:

Article