Works matching IS 03051048 AND DT 2016 AND VI 44 AND IP 10

Results: 47

Diverged composition and regulation of the Trypanosoma brucei origin recognition complex that mediates DNA replication initiation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4763, doi. 10.1093/nar/gkw147

By:

Marques, Catarina A.;
Tiengwe, Calvin;
Lemgruber, Leandro;
Damasceno, Jeziel D.;
Scott, Alan;
Paape, Daniel;
Marcello, Lucio;
McCulloch, Richard

Publication type:

Article

Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4610, doi. 10.1093/nar/gkw067

By:

Won Kyung Lee;
Myeon Haeng Cho

Publication type:

Article

SRAMP: prediction of mammalian N6-methyladenosine (m6A) sites based on sequence-derived features.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. e91, doi. 10.1093/nar/gkw104

By:

Yuan Zhou;
Pan Zeng;
Yan-Hui Li;
Ziding Zhang;
Qinghua Cui

Publication type:

Article

RiboFR-Seq: a novel approach to linking 16S rRNA amplicon profiles to metagenomes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. e99, doi. 10.1093/nar/gkw165

By:

Yanming Zhang;
Peifeng Ji;
Jinfeng Wang;
Fangqing Zhao

Publication type:

Article

Dimerization of SLX4 contributes to functioning of the SLX4-nuclease complex.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4871, doi. 10.1093/nar/gkw354

By:

Jinhu Yin;
Bingbing Wan;
Sarkar, Jaya;
Horvath, Kent;
Jian Wu;
Yong Chen;
Guangjuan Cheng;
Ke Wan;
Chin, Peiju;
Ming Lei;
Yie Liu

Publication type:

Article

Base pairing and structural insights into the 5-formylcytosine in RNA duplex.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4968, doi. 10.1093/nar/gkw235

By:

Rui Wang;
Zhipu Luo;
Kaizhang He;
Delaney, Michael O.;
Chen, Doris;
Jia Sheng

Publication type:

Article

Long-range looping of a locus control region drives tissue-specific chromatin packing within a multigene cluster.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4651, doi. 10.1093/nar/gkw090

By:

Tsai, Yu-Cheng;
Cooke, Nancy E.;
Liebhaber, Stephen A.

Publication type:

Article

f-divergence cutoff index to simultaneously identify differential expression in the integrated transcriptome and proteome.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. e97, doi. 10.1093/nar/gkw157

By:

Shaojun Tang;
Hemberg, Martin;
Cansizoglu, Ertugrul;
Belin, Stephane;
Kosik, Kenneth;
Kreiman, Gabriel;
Steen, Hanno;
Steen, Judith

Publication type:

Article

CLASS2: accurate and efficient splice variant annotation from RNA-seq reads.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. e98, doi. 10.1093/nar/gkw158

By:

Li Song;
Sabunciyan, Sarven;
Florea, Liliana

Publication type:

Article

Pluralistic and stochastic gene regulation: examples, models and consistent theory.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4595, doi. 10.1093/nar/gkw042

By:

Salas, Elisa N.;
Jiang Shu;
Cserhati, Matyas F.;
Weeks, Donald P.;
Ladunga, Istvan

Publication type:

Article

Selection of DNA nanoparticles with preferential binding to aggregated protein target.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. e96, doi. 10.1093/nar/gkw136

By:

Ruff, Laura E.;
Sapre, Ajay A.;
Plaut, Justin S.;
De Maere, Elisabeth;
Mortier, Charlotte;
Nguyen, Valerie;
Separa, Kevin;
Vandenbogaerde, Sofie;
Vandewalle, Laura;
Esener, Sadik C.;
Messmer, Bradley T.

Publication type:

Article

How topoisomerase IV can efficiently unknot and decatenate negatively supercoiled DNA molecules without causing their torsional relaxation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4528, doi. 10.1093/nar/gkw311

By:

Rawdon, Eric J.;
Dorier, Julien;
Racko, Dusan;
Millett, Kenneth C.;
Stasiak, Andrzej

Publication type:

Article

Flexibility of KorA, a plasmid-encoded, global transcription regulator, in the presence and the absence of its operator.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4947, doi. 10.1093/nar/gkw191

By:

Rajasekar, Karthik V.;
Lovering, Andrew L.;
Dancea, Felician;
Scott, David J.;
Harris, Sarah A.;
Bingle, Lewis E. H.;
Roessle, Manfred;
Thomas, Christopher M.;
Hyde, Eva I.;
White, Scott A.

Publication type:

Article

Mixed Integer Linear Programming based machine learning approach identifies regulators of telomerase in yeast.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. e93, doi. 10.1093/nar/gkw111

By:

Poos, Alexandra M.;
Maicher, André;
Dieckmann, Anna K.;
Oswald, Marcus;
Eils, Roland;
Kupiec, Martin;
Luke, Brian;
König, Rainer

Publication type:

Article

PrimPol prevents APOBEC/AID family mediated DNA mutagenesis.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4734, doi. 10.1093/nar/gkw123

By:

Pilzecker, Bas;
Buoninfante, Olimpia Alessandra;
Pritchard, Colin;
Blomberg, Olga S.;
Huijbers, Ivo J.;
van den Berk, Paul C. M.;
Jacobs, Heinz

Publication type:

Article

A phospho-dependent mechanism involving NCoR and KMT2D controls a permissive chromatin state at Notch target genes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4703, doi. 10.1093/nar/gkw105

By:

Oswald, Franz;
Rodriguez, Patrick;
Giaimo, Benedetto Daniele;
Antonello, Zeus A.;
Mira, Laura;
Mittler, Gerhard;
Thiel, Verena N.;
Collins, Kelly J.;
Tabaja, Nassif;
Cizelsky, Wiebke;
Rothe, Melanie;
Kühl, Susanne J.;
Kühl, Michael;
Ferrante, Francesca;
Hein, Kerstin;
Kovall, Rhett A.;
Dominguez, Maria;
Tilman Borggrefe, Tilman

Publication type:

Article

The ISW1 and CHD1 ATP-dependent chromatin remodelers compete to set nucleosome spacing in vivo.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4625, doi. 10.1093/nar/gkw068

By:

Ocampo, Josefina;
Chereji, Răzvan V.;
Eriksson, Peter R.;
Clark, David J.

Publication type:

Article

Novel modes of RNA editing in mitochondria.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4907, doi. 10.1093/nar/gkw188

By:

Moreira, Sandrine;
Valach, Matus;
Aoulad-Aissa, Mohamed;
Otto, Christian;
Burger, Gertraud

Publication type:

Article

Alu retrotransposons promote differentiation of human carcinoma cells through the aryl hydrocarbon receptor.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4665, doi. 10.1093/nar/gkw095

By:

Morales-Hernández, Antonio;
González-Rico, Francisco J.;
Román, Angel C.;
Rico-Leo, Eva;
Alvarez-Barrientos, Alberto;
Sánchez, Laura;
Macia, Ángela;
Heras, Sara R.;
García-Pérez, José L.;
Merino, Jaime M.;
Fernández-Salguero, Pedro M.

Publication type:

Article

The non-coding RNA composition of the mitotic chromosome by 5'-tag sequencing.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4934, doi. 10.1093/nar/gkw195

By:

Yicong Meng;
Xianfu Yi;
Xinhui Li;
Chuansheng Hu;
Ju Wang;
Ling Bai;
Czajkowsky, Daniel M.;
Zhifeng Shao

Publication type:

Article

Insights into RNA binding by the anticancer drug cisplatin from the crystal structure of cisplatin-modified ribosome.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4978, doi. 10.1093/nar/gkw246

By:

Melnikov, Sergey V.;
Söll, Dieter;
Steitz, Thomas A.;
Polikanov, Yury S.

Publication type:

Article

C-terminal region of bacterial Ku controls DNA bridging, DNA threading and recruitment of DNA ligase D for double strand breaks repair.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4785, doi. 10.1093/nar/gkw149

By:

McGovern, Stephen;
Baconnais, Sonia;
Roblin, Pierre;
Nicolas, Pierre;
Drevet, Pascal;
Simonson, Héloïse;
Piétrement, Olivier;
Charbonnier, Jean-Baptiste;
Le Cam, Eric;
Noirot, Philippe;
Lecointe, François

Publication type:

Article

Discovering and understanding oncogenic gene fusions through data intensive computational approaches.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4487, doi. 10.1093/nar/gkw282

By:

Latysheva, Natasha S.;
Babu, M. Madan

Publication type:

Article

ORC interacts with THSC/TREX-2 and its subunits promote Nxf1 association with mRNP and mRNA export in Drosophila.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4920, doi. 10.1093/nar/gkw192

By:

Kopytova, Daria;
Popova, Varvara;
Kurshakova, Maria;
Shidlovskii, Yulii;
Nabirochkina, Elena;
Brechalov, Alexander;
Georgiev, Georgii;
Georgieva, Sofia

Publication type:

Article

Quantitative analysis and prediction of G-quadruplex forming sequences in double-stranded DNA.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4807, doi. 10.1093/nar/gkw272

By:

Kim, Minji;
Kreig, Alex;
Chun-Ying Lee;
Rube, H. Tomas;
Calvert, Jacob;
Song, Jun S.;
Myong, Sua

Publication type:

Article

The logic of DNA replication in double-stranded DNA viruses: insights from global analysis of viral genomes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4551, doi. 10.1093/nar/gkw322

By:

Kazlauskas, Darius;
Krupovic, Mart;
Venclovas, Česlovas

Publication type:

Article

Structure and mechanism of error-free replication past the major benzo[a]pyrene adduct by human DNA polymerase κ.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4957, doi. 10.1093/nar/gkw204

By:

Jha, Vikash;
Bian, Chuanbing;
Guangxin Xing;
Hong Ling

Publication type:

Article

Long-range transcriptional interference in E. coli used to construct a dual positive selection system for genetic switches.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. e95, doi. 10.1093/nar/gkw125

By:

Hoffmann, Stefan A.;
Kruse, Sabrina M.;
Arndt, Katja M.

Publication type:

Article

Imino proton NMR guides the reprogramming of AT specific minor groove binders for mixed base pair recognition.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4519, doi. 10.1093/nar/gkw353

By:

Harika, Narinder K.;
Paul, Ananya;
Stroeva, Ekaterina;
Yun Chai;
Boykin, David W.;
Germann, Markus W.;
Wilson, W. David

Publication type:

Article

RUNX super-enhancer control through the Notch pathway by Epstein-Barr virus transcription factors regulates B cell growth.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4636, doi. 10.1093/nar/gkw085

By:

Gunnell, Andrea;
Webb, Helen M.;
Wood, C. David;
McClellan, Michael J.;
Wichaidit, Billy;
Kempkes, Bettina;
Jenner, Richard G.;
Osborne, Cameron;
Farrell, Paul J.;
West, Michelle J.

Publication type:

Article

Sequence capture by hybridization to explore modern and ancient genomic diversity in model and nonmodel organisms.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4504, doi. 10.1093/nar/gkw309

By:

Gasc, Cyrielle;
Peyretaillade, Eric;
Peyret, Pierre

Publication type:

Article

A putative Leishmania DNA polymerase theta protects the parasite against oxidative damage.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4855, doi. 10.1093/nar/gkw346

By:

Fernández-Orgiler, Abel;
Martínez-Jiménez, María I.;
Alonso, Ana;
Alcolea, Pedro J.;
Requena, Jose M.;
Thomas, María C.;
Blanco, Luis;
Larraga, Vicente

Publication type:

Article

New origin firing is inhibited by APC/CCdh1 activation in S-phase after severe replication stress.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4745, doi. 10.1093/nar/gkw132

By:

Ercilla, Amaia;
Llopis, Alba;
Feu, Sonia;
Aranda, Sergi;
Ernfors, Patrik;
Freire, Raimundo;
Agell, Neus

Publication type:

Article

A high definition look at the NF-Y regulome reveals genome-wide associations with selected transcription factors.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4684, doi. 10.1093/nar/gkw096

By:

Dolfini, Diletta;
Zambelli, Federico;
Pedrazzoli, Maurizio;
Mantovani, Roberto;
Pavesi, Giulio

Publication type:

Article

Do nucleic acids moonlight as molecular chaperones?

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4835, doi. 10.1093/nar/gkw291

By:

Docter, Brianne E.;
Horowitz, Scott;
Gray, Michael J.;
Jakob, Ursula;
Bardwell, James C. A.

Publication type:

Article

Fragment-based modelling of single stranded RNA bound to RNA recognition motif containing proteins.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4565, doi. 10.1093/nar/gkw328

By:

de Beauchene, Isaure Chauvot;
de Vries, Sjoerd J.;
Zacharias, Martin

Publication type:

Article

DynaMIT: the dynamic motif integration toolkit.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4988, doi. 10.1093/nar/gkw119

By:

Dassi, Erik;
Quattrone, Alessandro

Publication type:

Article

NetDecoder: a network biology platform that decodes context-specific biological networks and gene activities.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. e100, doi. 10.1093/nar/gkw166

By:

da Rocha, Edroaldo Lummertz;
Choong Yong Ung;
McGehee, Cordelia D.;
Correia, Cristina;
Hu Li

Publication type:

Article

Identification and analysis of integrons and cassette arrays in bacterial genomes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4539, doi. 10.1093/nar/gkw319

By:

Cury, Jean;
Jové, Thomas;
Touchon, Marie;
Néron, Bertrand;
Rocha, Eduardo P. C.

Publication type:

Article

Identification of L1 ORF2p sequence important to retrotransposition using Bipartile Alu retrotransposition (BAR).

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4818, doi. 10.1093/nar/gkw277

By:

Christian, Claiborne M.;
de Haro, Dawn;
Kines, Kristine J.;
Sokolowski, Mark;
Belancio, Victoria P.

Publication type:

Article

Novel glycylated sugar alcohols protect ESC-specific microRNAs from degradation in iPS cells.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4894, doi. 10.1093/nar/gkw186

By:

Chang-Lin, Samantha;
Hung, Albert;
Chang, Donald C.;
Yi-Wen Lin;
Shao-Yao Ying;
Shi-Lung Lin

Publication type:

Article

The human DNA ends proteome uncovers an unexpected entanglement of functional pathways.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4721, doi. 10.1093/nar/gkw121

By:

Berthelot, Vivien;
Mouta-Cardoso, Gildas;
Hégarat, Nadia;
Guillonneau, François;
François, Jean-Christophe;
Giovannangeli, Carine;
Praseuth, Danièle;
Rusconi, Filippo

Publication type:

Article

Ribosome hibernation factor promotes Staphylococcal survival and differentially represses translation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4881, doi. 10.1093/nar/gkw180

By:

Basu, Arnab;
Yap, Mee-Ngan F.

Publication type:

Article

A conformation-induced fluorescence method for microRNA detection.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. e92, doi. 10.1093/nar/gkw108

By:

Aw, Sherry S.;
Tang, Melissa X. M.;
Teo, Yin Nah;
Cohen, Stephen M.

Publication type:

Article

Engineering a ribozyme cleavage-induced split fluorescent aptamer complementation assay.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. e94, doi. 10.1093/nar/gkw117

By:

Ausländer, Simon;
Fuchs, David;
Hürlemann, Samuel;
Ausländer, David;
Fussenegger, Martin

Publication type:

Article

Phase variation of a Type IIG restriction-modification enzyme alters site-specific methylation patterns and gene expression in Campylobacter jejuni strain NCTC11168.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4581, doi. 10.1093/nar/gkw019

By:

Anjum, Awais;
Brathwaite, Kelly J.;
Aidley, Jack;
Connerton, Phillippa L.;
Cummings, Nicola J.;
Parkhill, Julian;
Connerton, Ian;
Bayliss, Christopher D.

Publication type:

Article

Stability versus exchange: a paradox in DNA replication.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 10, p. 4846, doi. 10.1093/nar/gkw296

By:

Åberg, Christoffer;
Duderstadt, Karl E.;
van Oijen, Antoine M.

Publication type:

Article