Works matching IS 03051048 AND DT 2016 AND VI 44

Results: 1290

Corrigendum.

Published in:: Nucleic Acids Research, 2016, v. 44, n. 22, p. 11033, doi. 10.1093/nar/gkw880
Publication type:: Article

A direct view of the complex multi-pathway folding of telomeric G-quadruplexes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 11024, doi. 10.1093/nar/gkw1010

By:

Aznauryan, Mikayel;
Søndergaard, Siri;
Noer, Sofie L.;
Schiøtt, Birgit;
Birkedal, Victoria

Publication type:

Article

Nucleic acid clamp-mediated recognition and stabilization of the physiologically relevant MYC promoter G-quadruplex.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 11013, doi. 10.1093/nar/gkw1006

By:

Taisen Hao;
Gaerig, Vanessa C.;
Brooks, Tracy A.

Publication type:

Article

Folding and misfolding pathways of G-quadruplex DNA.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10999, doi. 10.1093/nar/gkw970

By:

Marchand, Adrien;
Gabelica, Valérie

Publication type:

Article

S-Geranyl-2-thiouridine wobble nucleosides of bacterial tRNAs; chemical and enzymatic synthesis of S-geranylated-RNAs and their physicochemical characterization.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10986, doi. 10.1093/nar/gkw727

By:

Sierant, Malgorzata;
Leszczynska, Grazyna;
Sadowska, Klaudia;
Dziergowska, Agnieszka;
Rozanski, Michal;
Sochacka, Elzbieta;
Nawrot, Barbara

Publication type:

Article

A deafness-associated tRNAAsp mutation alters the m¹G37 modification, aminoacylation and stability of tRNAAsp and mitochondrial function.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10974, doi. 10.1093/nar/gkw726

By:

Meng Wang;
Yanyan Peng;
Jing Zheng;
Binjiao Zheng;
Xiaofen Jin;
Hao Liu;
Yong Wang;
Xiaowen Tang;
Taosheng Huang;
Pingping Jiang;
Min-Xin Guan

Publication type:

Article

Variant U1 snRNAs are implicated in human pluripotent stem cell maintenance and neuromuscular disease.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10960, doi. 10.1093/nar/gkw711

By:

Vazquez-Arango, Pilar;
Vowles, Jane;
Browne, Cathy;
Hartfield, Elizabeth;
Fernandes, Hugo J. R.;
Mandefro, Berhan;
Sareen, Dhruv;
James, William;
Wade-Martins, Richard;
Cowley, Sally A.;
Murphy, Shona;
O'Reilly, Dawn

Publication type:

Article

tRNA anticodon loop modifications ensure protein homeostasis and cell morphogenesis in yeast.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10946, doi. 10.1093/nar/gkw705

By:

Klassen, Roland;
Ciftci, Akif;
Funk, Johanna;
Bruch, Alexander;
Butter, Falk;
Schaffrath, Raffael

Publication type:

Article

Nuclear poly(A)-binding protein aggregates misplace a pre-mRNA outside of SC35 speckle causing its abnormal splicing.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10929, doi. 10.1093/nar/gkw703

By:

Klein, Pierre;
Oloko, Martine;
Roth, Fanny;
Montel, Valérie;
Malerba, Alberto;
Jarmin, Susan;
Gidaro, Teresa;
Popplewell, Linda;
Perie, Sophie;
St Guily, Jean Lacau;
de la Grange, Pierre;
Antoniou, Michael N.;
Dickson, George;
Butler-Browne, Gillian;
Bastide, Bruno;
Mouly, Vincent;
Trollet, Capucine

Publication type:

Article

A multi-step model for facilitated unwinding of the yeast U4/U6 RNA duplex.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10912, doi. 10.1093/nar/gkw686

By:

Rodgers, Margaret L.;
Didychuk, Allison L.;
Butcher, Samuel E.;
Brow, David A.;
Hoskins, Aaron A.

Publication type:

Article

Role of mRNA structure in the control of protein folding.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10898, doi. 10.1093/nar/gkw671

By:

Faure, Guilhem;
Ogurtsov, Aleksey Y.;
Shabalina, Svetlana A.;
Koonin, Eugene V.

Publication type:

Article

Single-molecule analysis of ΦC31 integrase-mediated site-specific recombination by tethered particle motion.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10804, doi. 10.1093/nar/gkw861

By:

Hsiu-Fang Fan;
Tao-shih Hsieh;
Chien-Hui Ma;
Jayaram, Makkuni

Publication type:

Article

RNA Editing TUTase 1: structural foundation of substrate recognition, complex interactions and drug targeting.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10862, doi. 10.1093/nar/gkw917

By:

Rajappa-Titu, Lional;
Takuma Suematsu;
Munoz-Tello, Paola;
Long, Marius;
Demir, Özlem;
Cheng, Kevin J.;
Stagno, Jason R.;
Luecke, Hartmut;
Amaro, Rommie E.;
Aphasizheva, Inna;
Aphasizhev, Ruslan;
Thore, Stéphane

Publication type:

Article

Altered stoichiometry Escherichia coli Cascade complexes with shortened CRISPR RNA spacers are capable of interference and primed adaptation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10849, doi. 10.1093/nar/gkw914

By:

Kuznedelov, Konstantin;
Mekler, Vladimir;
Lemak, Sofia;
Tokmina-Lukaszewska, Monika;
Datsenko, Kirill A.;
Jain, Ishita;
Savitskaya, Ekaterina;
Mallon, John;
Shmakov, Sergey;
Bothner, Brian;
Bailey, Scott;
Yakunin, Alexander F.;
Severinov, Konstantin;
Semenova, Ekaterina

Publication type:

Article

Methylation at position 32 of tRNA catalyzed by TrmJ alters oxidative stress response in Pseudomonas aeruginosa.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10834, doi. 10.1093/nar/gkw870

By:

Jaroensuk, Juthamas;
Atichartpongkul, Sopapan;
Yok Hian Chionh;
Yee Hwa Wong;
Chong Wai Liew;
McBee, Megan E.;
Thongdee, Narumon;
Prestwich, Erin G.;
DeMott, Michael S.;
Mongkolsuk, Skorn;
Dedon, Peter C.;
Lescar, Julien;
Fuangthong, Mayuree

Publication type:

Article

Rev1 is a base excision repair enzyme with 5'-deoxyribose phosphate lyase activity.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10824, doi. 10.1093/nar/gkw869

By:

Prasad, Rajendra;
Poltoratsky, Vladimir;
Hou, Esther W.;
Wilson, Samuel H.

Publication type:

Article

Roles for APRIN (PDS5B) in homologous recombination and in ovarian cancer prediction.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10879, doi. 10.1093/nar/gkw921

By:

Couturier, Anthony M.;
Fleury, Hubert;
Patenaude, Anne-Marie;
Bentley, Victoria L.;
Rodrigue, Amélie;
Coulombe, Yan;
Niraj, Joshi;
Pauty, Joris;
Berman, Jason N.;
Dellaire, Graham;
Di Noia, Javier M.;
Mes-Masson, Anne-Marie;
Masson, Jean-Yves

Publication type:

Article

Altered biochemical specificity of G-quadruplexes with mutated tetrads.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10789, doi. 10.1093/nar/gkw987

By:

Švehlová, Kateřina;
Lawrence, Michael S.;
Bednárová, Lucie;
Curtis, Edward A.

Publication type:

Article

Human eIF3b and eIF3a serve as the nucleation core for the assembly of eIF3 into two interconnected modules: the yeast-like core and the octamer.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10772, doi. 10.1093/nar/gkw972

By:

Wagner, Susan;
Herrmannová, Anna;
Šikrová, Darina;
Valášek, Leoš Shivaya

Publication type:

Article

FANCI-FANCD2 stabilizes the RAD51-DNA complex by binding RAD51 and protects the 5'-DNA end.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10758, doi. 10.1093/nar/gkw876

By:

Koichi Sato;
Mayo Shimomuki;
Yoko Katsuki;
Daisuke Takahashi;
Wataru Kobayashi;
Masamichi Ishiai;
Hiroyuki Miyoshi;
Minoru Takata;
Hitoshi Kurumizaka

Publication type:

Article

Rad51 and Rad54 promote noncrossover recombination between centromere repeats on the same chromatid to prevent isochromosome formation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10744, doi. 10.1093/nar/gkw874

By:

Onaka, Atsushi T.;
Naoko Toyofuku;
Takahiro Inoue;
Okita, Akiko K.;
Minami Sagawa;
Jie Su;
Takeshi Shitanda;
Rei Matsuyama;
Faria Zafar;
Takahashi, Tatsuro S.;
Hisao Masukata;
Takuro Nakagawa

Publication type:

Article

Adaptive upregulation of DNA repair genes following benzo(a)pyrene diol epoxide protects against cell death at the expense of mutations.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10727, doi. 10.1093/nar/gkw873

By:

Christmann, Markus;
Boisseau, Catherine;
Kitzinger, Rebekka;
Berac, Christian;
Allmann, Sebastian;
Sommer, Tina;
Aasland, Dorthe;
Kaina, Bernd;
Tomicic, Maja T.

Publication type:

Article

AKAP12 mediates PKA-induced phosphorylation of ATR to enhance nucleotide excision repair.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10711, doi. 10.1093/nar/gkw871

By:

Jarrett, Stuart G.;
Horrell, Erin M. Wolf;
D'Orazio, John A.

Publication type:

Article

Single-molecule FRET studies of the cooperative and non-cooperative binding kinetics of the bacteriophage T4 single-stranded DNA binding protein (gp32) to ssDNA lattices at replication fork junctions.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10691, doi. 10.1093/nar/gkw863

By:

Lee, Wonbae;
Gillies, John P.;
Jose, Davis;
Israels, Brett A.;
von Hippel, Peter H.;
Marcus, Andrew H.

Publication type:

Article

Nucleolytic processing of aberrant replication intermediates by an Exo1-Dna2-Sae2 axis counteracts fork collapse-driven chromosome instability.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10676, doi. 10.1093/nar/gkw858

By:

Colosio, Arianna;
Frattini, Camilla;
Pellicanò, Grazia;
Villa-Hernández, Sara;
Bermejo, Rodrigo

Publication type:

Article

PCAF-mediated acetylation of transcriptional factor HOXB9 suppresses lung adenocarcinoma progression by targeting oncogenic protein JMJD6.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10662, doi. 10.1093/nar/gkw808

By:

Junhu Wan;
Weizhi Xu;
Jun Zhan;
Ji Ma;
Xueying Li;
Yuping Xie;
Jiadong Wang;
Wei-guo Zhu;
Jianyuan Luo;
Hongquan Zhang

Publication type:

Article

A quantitative proteomics approach identifies ETV6 and IKZF1 as new regulators of an ERG-driven transcriptional network.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10644, doi. 10.1093/nar/gkw804

By:

Unnikrishnan, Ashwin;
Guan, Yi F.;
Yizhou Huang;
Beck, Dominik;
Thoms, Julie A. I.;
Peirs, Sofie;
Knezevic, Kathy;
Shiyong Ma;
de Walle, Inge V.;
de Jong, Ineke;
Ali, Zara;
Ling Zhong;
Raftery, Mark J.;
Taghon, Tom;
Larsson, Jonas;
MacKenzie, Karen L.;
Van Vlierberghe, Pieter;
Wong, Jason W. H.;
Pimanda, John E.

Publication type:

Article

The lncRNA HOTAIR impacts on mesenchymal stem cells via triple helix formation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10631, doi. 10.1093/nar/gkw802

By:

Kalwa, Marie;
Hänzelmann, Sonja;
Otto, Sabrina;
Chao-Chung Kuo;
Franzen, Julia;
Joussen, Sylvia;
Fernandez-Rebollo, Eduardo;
Rath, Björn;
Koch, Carmen;
Hofmann, Andrea;
Shih-Han Lee;
Teschendorff, Andrew E.;
Denecke, Bernd;
Qiong Lin;
Widschwendter, Martin;
Weinhold, Elmar;
Costa, Ivan G.;
Wagner, Wolfgang

Publication type:

Article

Transcription-coupled changes to chromatin underpin gene silencing by transcriptional interference.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10619, doi. 10.1093/nar/gkw801

By:

Ard, Ryan;
Allshire, Robin C.

Publication type:

Article

A feedback loop comprising PRMT7 and miR-24-2 interplays with Oct4, Nanog, Klf4 and c-Myc to regulate stemness.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10603, doi. 10.1093/nar/gkw788

By:

Sung-Hun Lee;
Tsai-Yu Chen;
Dhar, Shilpa S.;
Bingnan Gu;
Kaifu Chen;
Young Zoon Kim;
Wei Li;
Min Gyu Lee

Publication type:

Article

CTCF modulates Estrogen Receptor function through specific chromatin and nuclear matrix interactions.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10588, doi. 10.1093/nar/gkw785

By:

Fiorito, Elisa;
Sharma, Yogita;
Gilfillan, Siv;
Shixiong Wang;
Singh, Sachin Kumar;
Satheesh, Somisetty V.;
Katika, Madhumohan R.;
Urbanucci, Alfonso;
Thiede, Bernd;
Mills, Ian G.;
Hurtado, Antoni

Publication type:

Article

Alu repeats as transcriptional regulatory platforms in macrophage responses to M. tuberculosis infection.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10571, doi. 10.1093/nar/gkw782

By:

Bouttier, Manuella;
Laperriere, David;
Memari, Babak;
Mangiapane, Joseph;
Fiore, Amanda;
Mitchell, Eric;
Verway, Mark;
Behr, Marcel A.;
Sladek, Robert;
Barreiro, Luis B.;
Mader, Sylvie;
White, John H.

Publication type:

Article

Co-dependence between trypanosome nuclear lamina components in nuclear stability and control of gene expression.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10554, doi. 10.1093/nar/gkw751

By:

Maishman, Luke;
Obado, Samson O.;
Alsford, Sam;
Bart, Jean-Mathieu;
Wei-Ming Chen;
Ratushny, Alexander V.;
Navarro, Miguel;
Horn, David;
Aitchison, John D.;
Chait, Brian T.;
Rout, Michael P.;
Field, Mark C.

Publication type:

Article

RNA2DNAlign: nucleotide resolution allele asymmetries through quantitative assessment of RNA and DNA paired sequencing data.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 1, doi. 10.1093/nar/gkw757

By:

Movassagh, Mercedeh;
Alomran, Nawaf;
Mudvari, Prakriti;
Dede, Merve;
Dede, Cem;
Kowsari, Kamran;
Restrepo, Paula;
Cauley, Edmund;
Bahl, Sonali;
Li, Muzi;
Waterhouse, Wesley;
Tsaneva-Atanasova, Krasimira;
Edwards, Nathan;
Horvath, Anelia

Publication type:

Article

Kinetics of transcription initiation directed by multiple cis-regulatory elements on the glnAp2 promoter.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10530, doi. 10.1093/nar/gkw1150

By:

Yaolai Wang;
Feng Liu;
Wei Wang

Publication type:

Article

Editorial: NAR Awards 2016.

Published in:: Nucleic Acids Research, 2016, v. 44, n. 22, p. 10527, doi. 10.1093/nar/gkw1168
Publication type:: Article

smiFISH and FISH-quant - a flexible single RNA detection approach with super-resolution capability.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 1, doi. 10.1093/nar/gkw784

By:

Tsanov, Nikolay;
Samacoits, Aubin;
Chouaib, Racha;
Traboulsi, Abdel-Meneem;
Gostan, Thierry;
Weber, Christian;
Zimmer, Christophe;
Zibara, Kazem;
Walter, Thomas;
Peter, Marion;
Bertrand, Edouard;
Mueller, Florian

Publication type:

Article

Cell-based high-throughput compound screening reveals functional interaction between oncofetal HMGA2 and topoisomerase I.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 1, doi. 10.1093/nar/gkw759

By:

Peter, Sabrina;
Haojie Yu;
Ivanyi-Nagy, Roland;
Dröge, Peter

Publication type:

Article

Chromatin recruitment of activated AMPK drives fasting response genes co-controlled by GR and PPARα.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10539, doi. 10.1093/nar/gkw742

By:

Ratman, Dariusz;
Mylka, Viacheslav;
Bougarne, Nadia;
Pawlak, Michal;
Caron, Sandrine;
Hennuyer, Nathalie;
Paumelle, Réjane;
De Cauwer, Lode;
Thommis, Jonathan;
Rider, Mark H.;
Libert, Claude;
Lievens, Sam;
Tavernier, Jan;
Staels, Bart;
De Bosscher, Karolien

Publication type:

Article

Personalized characterization of diseases using sample-specific networks.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 1, doi. 10.1093/nar/gkw772

By:

Xiaoping Liu;
Yuetong Wang;
Hongbin Ji;
Kazuyuki Aihara;
Luonan Chen

Publication type:

Article

Order restricted inference for oscillatory systems for detecting rhythmic signals.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 1, doi. 10.1093/nar/gkw771

By:

Larriba, Yolanda;
Rueda, Cristina;
Fernández, Miguel A.;
Peddada, Shyamal D.

Publication type:

Article

A highly specific sodium aptamer probed by 2-aminopurine for robust Na+ sensing.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10377, doi. 10.1093/nar/gkw845

By:

Wenhu Zhou;
Jinsong Ding;
Juewen Liu

Publication type:

Article

Single-nucleus RNA-seq of differentiating human myoblasts reveals the extent of fate heterogeneity.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 1, doi. 10.1093/nar/gkw739

By:

Weihua Zeng;
Shan Jiang;
Xiangduo Kong;
El-Ali, Nicole;
Ball Jr, Alexander R.;
I-Hsing Ma, Christopher;
Naohiro Hashimoto;
Kyoko Yokomori;
Mortazavi, Ali

Publication type:

Article

Dissecting relative contributions of cis- and trans-determinants to nucleosome distribution by comparing Tetrahymena macronuclear and micronuclear chromatin.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10091, doi. 10.1093/nar/gkw684

By:

Jie Xiong;
Shan Gao;
Wen Dui;
Wentao Yang;
Xiao Chen;
Taverna, Sean D.;
Pearlman, Ronald E.;
Ashlock, Wendy;
Wei Miao;
Yifan Liu

Publication type:

Article

Evaluating the impact of single nucleotide variants on transcription factor binding.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10106, doi. 10.1093/nar/gkw691

By:

Wenqiang Shi;
Fornes, Oriol;
Mathelier, Anthony;
Wasserman, Wyeth W.

Publication type:

Article

Global tRNA misacylation induced by anaerobiosis and antibiotic exposure broadly increases stress resistance in Escherichia coli.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10292, doi. 10.1093/nar/gkw856

By:

Schwartz, Michael H.;
Waldbauer, Jacob R.;
Lichun Zhang;
Tao Pan

Publication type:

Article

The multifaceted influence of histone deacetylases on DNA damage signalling and DNA repair.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10017, doi. 10.1093/nar/gkw922

By:

Roos, Wynand Paul;
Krumm, Andrea

Publication type:

Article

Differential cytokine sensitivities of STAT5-dependent enhancers rely on Stat5 autoregulation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10277, doi. 10.1093/nar/gkw844

By:

Willi, Michaela;
Kyung Hyun Yoo;
Chaochen Wang;
Trajanoski, Zlatko;
Hennighausen, Lothar

Publication type:

Article

Mechanistic determinants of MBNL activity.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10326, doi. 10.1093/nar/gkw915

By:

Sznajder, Łukasz J.;
Michalak, Michał;
Taylor, Katarzyna;
Cywoniuk, Piotr;
Kabza, Michał;
Wojtkowiak-Szlachcic, Agnieszka;
Matłoka, Magdalena;
Konieczny, Patryk;
Sobczak, Krzysztof

Publication type:

Article

Single-molecule FRET reveals the pre-initiation and initiation conformations of influenza virus promoter RNA.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 21, p. 10304, doi. 10.1093/nar/gkw884

By:

Robb, Nicole C.;
te Velthuis, Aartjan J. W.;
Wieneke, Ralph;
Tampé, Robert;
Cordes, Thorben;
Fodor, Ervin;
Kapanidis, Achillefs N.

Publication type:

Article