Works matching IS 03051048 AND DT 2015 AND VI 43 AND IP W1

Results: 99

ChIP-Array 2: integrating multiple omics data to construct gene regulatory networks.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W264, doi. 10.1093/nar/gkv398

By:

Panwen Wang;
Jing Qin;
Yiming Qin;
Yun Zhu;
Lily Yan Wang;
Mulin Jun Li;
Zhang, Michael Q.;
Junwen Wang

Publication type:

Article

CCTOP: a Consensus Constrained TOPology prediction web server.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W408, doi. 10.1093/nar/gkv451

By:

Dobson, László;
Reményi, István;
Tusnády, Gábor E.

Publication type:

Article

Assessing the impact of mutations found in next generation sequencing data over human signaling pathways.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W270, doi. 10.1093/nar/gkv349

By:

Hernansaiz-Ballesteros, Rosa D.;
Salavert, Francisco;
Sebastián-León, Patricia;
Alemán, Alejandro;
Medina, Ignacio;
Dopazo, Joaquín

Publication type:

Article

PheNetic: network-based interpretation of molecular profiling data.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W244, doi. 10.1093/nar/gkv347

By:

De Maeyer, Dries;
Weytjens, Bram;
Renkens, Joris;
De Raedt, Luc;
Marchal, Kathleen

Publication type:

Article

WAXSiS: a web server for the calculation of SAXS/WAXS curves based on explicit-solvent molecular dynamics.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W225, doi. 10.1093/nar/gkv309

By:

Knight, Christopher J.;
Hub, Jochen S.

Publication type:

Article

webSDA: a web server to simulate macromolecular diffusional association.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W220, doi. 10.1093/nar/gkv335

By:

Xiaofeng Yu;
Martinez, Michael;
Gable, Annika L.;
Fuller, Jonathan C.;
Bruce, Neil J.;
Richter, Stefan;
Wade, Rebecca C.

Publication type:

Article

CATNAP: a tool to compile, analyze and tally neutralizing antibody panels.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W213, doi. 10.1093/nar/gkv404

By:

Hyejin Yoon;
Macke, Jennifer;
West Jr., Anthony P.;
Foley, Brian;
Bjorkman, Pamela J.;
Korber, Bette;
Yusim, Karina

Publication type:

Article

Galahad: a web server for drug effect analysis from gene expression.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W208, doi. 10.1093/nar/gkv436

By:

Laenen, Griet;
Ardeshirdavani, Amin;
Moreau, Yves;
Thorrez, Lieven

Publication type:

Article

FAF-Drugs3: a web server for compound property calculation and chemical library design.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W200, doi. 10.1093/nar/gkv353

By:

Lagorce, David;
Sperandio, Olivier;
Baell, Jonathan B.;
Miteva, Maria A.;
Villoutreix, Bruno O.

Publication type:

Article

CellWhere: graphical display of interaction networks organized on subcellular localizations.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W571, doi. 10.1093/nar/gkv354

By:

Lu Zhu;
Malatras, Apostolos;
Thorley, Matthew;
Aghoghogbe, Idonnya;
Mer, Arvind;
Duguez, Stephanie;
Butler-Browne, Gillian;
Voit, Thomas;
Duddy, William

Publication type:

Article

DeAnnCNV: a tool for online detection and annotation of copy number variations from whole-exome sequencing data.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W289, doi. 10.1093/nar/gkv556

By:

Yuanwei Zhang;
Zhenhua Yu;
Rongjun Ban;
Huan Zhang;
Iqbal, Furhan;
Aiwu Zhao;
Ao Li;
Qinghua Shi

Publication type:

Article

PrionW: a server to identify proteins containing glutamine/asparagine rich prion-like domains and their amyloid cores.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W331, doi. 10.1093/nar/gkv490

By:

Zambrano, Rafael;
Conchillo-Sole, Oscar;
Iglesias, Valentin;
Illa, Ricard;
Rousseau, Frederic;
Schymkowitz, Joost;
Sabate, Raimon;
Daura, Xavier;
Ventura, Salvador

Publication type:

Article

AGGRESCAN3D (A3D): server for prediction of aggregation properties of protein structures.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W306, doi. 10.1093/nar/gkv359

By:

Zambrano, Rafael;
Jamroz, Michal;
Szczasiuk, Agata;
Pujols, Jordi;
Kmiecik, Sebastian;
Ventura, Salvador

Publication type:

Article

RNA-Redesign: a web server for fixed-backbone 3D design of RNA.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W498, doi. 10.1093/nar/gkv465

By:

Yesselman, Joseph D.;
Das, Rhiju

Publication type:

Article

I-TASSER server: new development for protein structure and function predictions.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W174, doi. 10.1093/nar/gkv342

By:

Jianyi Yang;
Yang Zhang

Publication type:

Article

MetaboAnalyst 3.0--making metabolomics more meaningful.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W251, doi. 10.1093/nar/gkv380

By:

Jianguo Xia;
Sinelnikov, Igor V.;
Han, Beomsoo;
Wishart, David S.

Publication type:

Article

IMP 2.0: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W128, doi. 10.1093/nar/gkv486

By:

Wong, Aaron K.;
Krishnan, Arjun;
Yao, Victoria;
Tadych, Alicja;
Troyanskaya, Olga G.

Publication type:

Article

antiSMASH 3.0--a comprehensive resource for the genome mining of biosynthetic gene clusters.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W237, doi. 10.1093/nar/gkv437

By:

Weber, Tilmann;
Kai Blin;
Duddela, Srikanth;
Krug, Daniel;
Hyun Uk Kim;
Bruccoleri, Robert;
Sang Yup Lee;
Fischbach, Michael A.;
Müller, Rolf;
Wohlleben, Wolfgang;
Breitling, Rainer;
Takano, Eriko;
Medema, Marnix H.

Publication type:

Article

Vibration Perception Threshold as a Measure of Distal Symmetrical Peripheral Neuropathy in Type 1 Diabetes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. 2635, doi. 10.2337/dc10-0616

By:

MARTIN, CATHERINE L.;
WABERSKI, BARBARA H.;
POP-BUSUI, RODICA;
CLEARY, PATRICIA A.;
CATTON, SARAH;
ALBERS, JAMES W.;
FELDMAN, EVA L.;
HERMAN, WILLIAM H.

Publication type:

Article

OrthoVenn: a web server for genome wide comparison and annotation of orthologous clusters across multiple species.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W78, doi. 10.1093/nar/gkv487

By:

Yi Wang;
Coleman-Derr, Devin;
Guoping Chen;
Gu, Yong Q.

Publication type:

Article

Editorial: Nucleic Acids Research annual Web Server Issue in 2015.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W1, doi. 10.1093/nar/gkv581

By:

Benson, Gary

Publication type:

Article

DIANA-miRPath v3.0: deciphering microRNA function with experimental support.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W460, doi. 10.1093/nar/gkv403

By:

Vlachos, Ioannis S.;
Zagganas, Konstantinos;
Paraskevopoulou, Maria D.;
Georgakilas, Georgios;
Karagkouni, Dimitra;
Vergoulis, Thanasis;
Dalamagas, Theodore;
Hatzigeorgiou, Artemis G.

Publication type:

Article

NPDock: a web server for protein-nucleic acid docking.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W425, doi. 10.1093/nar/gkv493

By:

Tuszynska, Irina;
Magnus, Marcin;
Jonak, Katarzyna;
Dawson, Wayne;
Bujnicki, Janusz M.

Publication type:

Article

The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W401, doi. 10.1093/nar/gkv485

By:

Tsirigos, Konstantinos D.;
Peters, Christoph;
Nanjiang Shu;
Käll, Lukas;
Elofsson, Arne

Publication type:

Article

Primerize: automated primer assembly for transcribing non-coding RNA domains.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W522, doi. 10.1093/nar/gkv538

By:

Siqi Tian;
Yesselman, Joseph D.;
Cordero, Pablo;
Das, Rhiju

Publication type:

Article

The EBI Search engine: providing search and retrieval functionality for biological data from EMBL-EBI.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W585, doi. 10.1093/nar/gkv316

By:

Squizzato, Silvano;
Young Mi Park;
Buso, Nicola;
Gur, Tamer;
Cowley, Andrew;
Weizhong Li;
Uludag, Mahmut;
Pundir, Sangya;
Cham, Jennifer A.;
McWilliam, Hamish;
Lopez, Rodrigo

Publication type:

Article

PLIP: fully automated protein--ligand interaction profiler.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W443, doi. 10.1093/nar/gkv315

By:

Salentin, Sebastian;
Schreiber, Sven;
Haupt, V. Joachim;
Adasme, Melissa F.;
Schroeder, Michael

Publication type:

Article

SANSparallel: interactive homology search against Uniprot.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W24, doi. 10.1093/nar/gkv317

By:

Somervuo, Panu;
Holm, Liisa

Publication type:

Article

FlyNet: a versatile network prioritization server for the Drosophila community.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W91, doi. 10.1093/nar/gkv453

By:

Junha Shin;
Sunmo Yang;
Eiru Kim;
Chan Yeong Kim;
Hongseok Shim;
Ara Cho;
Hyojin Kim;
Sohyun Hwang;
Jung Eun Shim;
Insuk Lee

Publication type:

Article

NFFinder: an online bioinformatics tool for searching similar transcriptomics experiments in the context of drug repositioning.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W193, doi. 10.1093/nar/gkv445

By:

Setoain, Javier;
Franch, Monica;
Martinez, Marta;
Tabas-Madrid, Daniel;
Sorzano, Carlos O. S.;
Bakker, Annette;
Gonzalez-Couto, Eduardo;
Elvira, Juan;
Pascual-Montano, Alberto

Publication type:

Article

GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W7, doi. 10.1093/nar/gkv318

By:

Sela, Itamar;
Ashkenazy, Haim;
Katoh, Kazutaka;
Pupko, Tal

Publication type:

Article

PatternQuery: web application for fast detection of biomacromolecular structural patterns in the entire Protein Data Bank.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W383, doi. 10.1093/nar/gkv561

By:

Sehnal, David;
Pravda, Lukáš;
Vařeková, Radka Svobodova;
Ionescu, Crina-Maria;
Koča, Jaroslav

Publication type:

Article

The BioMart community portal: an innovative alternative to large, centralized data repositories.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W589, doi. 10.1093/nar/gkv350

By:

Smedley, Damian;
Haider, Syed;
Durinck, Steffen;
Pandini, Luca;
Provero, Paolo;
Allen, James;
Arnaiz, Olivier;
Awedh, Mohammad Hamza;
Baldock, Richard;
Barbiera, Giulia;
Bardou, Philippe;
Beck, Tim;
Blake, Andrew;
Bonierbale, Merideth;
Brookes, Anthony J.;
Bucci, Gabriele;
Buetti, Iwan;
Burge, Sarah;
Cabau, Cedric;
Carlson, Joseph W.

Publication type:

Article

SIFTER search: a web server for accurate phylogeny-based protein function prediction.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W141, doi. 10.1093/nar/gkv461

By:

Sahraeian, Sayed M.;
Luo, Kevin R.;
Brenner, Steven E.

Publication type:

Article

PhyloGene server for identification and visualization of co-evolving proteins using normalized phylogenetic profiles.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W154, doi. 10.1093/nar/gkv452

By:

Sadreyev, Ilyas R.;
Fei Ji;
Cohen, Emiliano;
Ruvkun, Gary;
Tabach, Yuval

Publication type:

Article

sRNAtoolbox: an integrated collection of small RNA research tools.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W467, doi. 10.1093/nar/gkv555

By:

Rueda, Antonio;
Barturen, Guillermo;
Lebrón, Ricardo;
Gómez-Martín, Cristina;
Alganza, Angel;
Oliver, Jose L.;
Hackenberg, Michael

Publication type:

Article

NGL Viewer: a web application for molecular visualization.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W576, doi. 10.1093/nar/gkv402

By:

Rose, Alexander S.;
Hildebrand, Peter W.

Publication type:

Article

APPRIS WebServer and WebServices.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W455, doi. 10.1093/nar/gkv512

By:

Rodriguez, Jose Manuel;
Carro, Angel;
Valencia, Alfonso;
Tress, Michael L.

Publication type:

Article

Introducing the PRIDE Archive RESTful web services.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W599, doi. 10.1093/nar/gkv382

By:

Reisinger, Florian;
del-Toro, Noemi;
Ternent, Tobias;
Hermjakob, Henning;
Vizcaíno, Juan Antonio

Publication type:

Article

Pathways with PathWhiz.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W552, doi. 10.1093/nar/gkv399

By:

Pon, Allison;
Jewison, Timothy;
Yilu Su;
Yongjie Liang;
Knox, Craig;
Maciejewski, Adam;
Wilson, Michael;
Wishart, David S.

Publication type:

Article

INGA: protein function prediction combining interaction networks, domain assignments and sequence similarity.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W134, doi. 10.1093/nar/gkv523

By:

Piovesan, Damiano;
Giollo, Manuel;
Leonardi, Emanuela;
Ferrari, Carlo;
Tosatto, Silvio C. E.

Publication type:

Article

RSAT 2015: Regulatory Sequence Analysis Tools.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W50, doi. 10.1093/nar/gkv362

By:

Medina-Rivera, Alejandra;
Defrance, Matthieu;
Sand, Olivier;
Herrmann, Carl;
Castro-Mondragon, Jaime A.;
Delerce, Jeremy;
Jaeger, Sébastien;
Blanchet, Christophe;
Vincens, Pierre;
Caron, Christophe;
Staines, Daniel M.;
Contreras-Moreira, Bruno;
Artufel, Marie;
Charbonnier-Khamvongsa, Lucie;
Hernandez, Céline;
Thieffry, Denis;
Thomas-Chollier, Morgane;
van Helden, Jacques

Publication type:

Article

SELPHI: correlation-based identification of kinase-associated networks from global phospho-proteomics data sets.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W276, doi. 10.1093/nar/gkv459

By:

Petsalaki, Evangelia;
Helbig, Andreas O.;
Gopal, Anjali;
Pasculescu, Adrian;
Roth, Frederick P.;
Pawson, Tony

Publication type:

Article

MapMyFlu: visualizing spatio-temporal relationships between related influenza sequences.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W547, doi. 10.1093/nar/gkv417

By:

Nolte, Nicholas;
Kurzawa, Nils;
Eils, Roland;
Herrmann, Carl

Publication type:

Article

Multidimensional gene search with Genehopper.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W98, doi. 10.1093/nar/gkv511

By:

Munz, Matthias;
Tönnies, Sascha;
Balke, Wolf-Tilo;
Simon, Eric

Publication type:

Article

ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W566, doi. 10.1093/nar/gkv468

By:

Metsalu, Tauno;
Vilo, Jaak

Publication type:

Article

StemChecker: a web-based tool to discover and explore stemness signatures in gene sets.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W72, doi. 10.1093/nar/gkv529

By:

Pinto, Jose P.;
Kalathur, Ravi K.;
Oliveira, Daniel V.;
Barata, Tânia;
Machado, Rui S. R.;
Machado, Susana;
Pacheco-Leyva, Ivette;
Duarte, Isabel;
Futschik, Matthias E.

Publication type:

Article

IntFOLD: an integrated server for modelling protein structures and functions from amino acid sequences.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W169, doi. 10.1093/nar/gkv236

By:

McGuffin, Liam J.;
Atkins, Jennifer D.;
Salehe, Bajuna R.;
Shuid, Ahmad N.;
Roche, Daniel B.

Publication type:

Article

NGS-eval: NGS Error analysis and novel sequence VAriant detection tooL.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W301, doi. 10.1093/nar/gkv346

By:

May, Ali;
Abeln, Sanne;
Buijs, Mark J.;
Heringa, Jaap;
Crielaard, Wim;
Brandt, Bernd W.

Publication type:

Article

Web-Beagle: a web server for the alignment of RNA secondary structures.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W493, doi. 10.1093/nar/gkv489

By:

Mattei, Eugenio;
Pietrosanto, Marco;
Ferrè, Fabrizio;
Helmer-Citterich, Manuela

Publication type:

Article