Works matching IS 03051048 AND DT 2015 AND VI 43 AND IP D1

Results: 176

The Digital Ageing Atlas: integrating the diversity of age-related changes into a unified resource.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D873, doi. 10.1093/nar/gku843

By:

Craig, Thomas;
Smelick, Chris;
Tacutu, Robi;
Wuttke, Daniel;
Wood, Shona H.;
Stanley, Henry;
Janssens, Georges;
Savitskaya, Ekaterina;
Moskalev, Alexey;
Arking, Robert;
de Magalhães, João Pedro

Publication type:

Article

AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D76, doi. 10.1093/nar/gku887

By:

Zhang, Hong-Mei;
Liu, Teng;
Liu, Chun-Jie;
Song, Shuangyang;
Zhang, Xiantong;
Liu, Wei;
Jia, Haibo;
Xue, Yu;
Guo, An-Yuan

Publication type:

Article

GenoBase: comprehensive resource database of Escherichia coli K-12.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D606, doi. 10.1093/nar/gku1164

By:

Otsuka, Yuta;
Muto, Ai;
Takeuchi, Rikiya;
Okada, Chihiro;
Ishikawa, Motokazu;
Nakamura, Koichiro;
Yamamoto, Natsuko;
Dose, Hitomi;
Nakahigashi, Kenji;
Tanishima, Shigeki;
Suharnan, Sivasundaram;
Nomura, Wataru;
Nakayashiki, Toru;
Aref, Walid G.;
Bochner, Barry R.;
Conway, Tyrrell;
Gribskov, Michael;
Kihara, Daisuke;
Rudd, Kenneth E.;
Tohsato, Yukako

Publication type:

Article

Expanded microbial genome coverage and improved protein family annotation in the COG database.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D261, doi. 10.1093/nar/gku1223

By:

Galperin, Michael Y.;
Makarova, Kira S.;
Wolf, Yuri I.;
Koonin, Eugene V.

Publication type:

Article

UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein–DNA interactions.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D117, doi. 10.1093/nar/gku1045

By:

Hume, Maxwell A.;
Barrera, Luis A.;
Gisselbrecht, Stephen S.;
Bulyk, Martha L.

Publication type:

Article

The Rat Genome Database 2015: genomic, phenotypic and environmental variations and disease.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D743, doi. 10.1093/nar/gku1026

By:

Shimoyama, Mary;
De Pons, Jeff;
Hayman, G. Thomas;
Laulederkind, Stanley J.F.;
Liu, Weisong;
Nigam, Rajni;
Petri, Victoria;
Smith, Jennifer R.;
Tutaj, Marek;
Wang, Shur-Jen;
Worthey, Elizabeth;
Dwinell, Melinda;
Jacob, Howard

Publication type:

Article

VaDE: a manually curated database of reproducible associations between various traits and human genomic polymorphisms.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D868, doi. 10.1093/nar/gku1037

By:

Nagai, Yoko;
Takahashi, Yasuko;
Imanishi, Tadashi

Publication type:

Article

Plastid-LCGbase: a collection of evolutionarily conserved plastid-associated gene pairs.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D990, doi. 10.1093/nar/gku1070

By:

Wang, Dapeng;
Yu, Jun

Publication type:

Article

BioModels: ten-year anniversary.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D542, doi. 10.1093/nar/gku1181

By:

Chelliah, Vijayalakshmi;
Juty, Nick;
Ajmera, Ishan;
Ali, Raza;
Dumousseau, Marine;
Glont, Mihai;
Hucka, Michael;
Jalowicki, Gaël;
Keating, Sarah;
Knight-Schrijver, Vincent;
Lloret-Villas, Audald;
Natarajan, Kedar Nath;
Pettit, Jean-Baptiste;
Rodriguez, Nicolas;
Schubert, Michael;
Wimalaratne, Sarala M.;
Zhao, Yangyang;
Hermjakob, Henning;
Le Novère, Nicolas;
Laibe, Camille

Publication type:

Article

A series of PDB-related databanks for everyday needs.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D364, doi. 10.1093/nar/gku1028

By:

Touw, Wouter G.;
Baakman, Coos;
Black, Jon;
te Beek, Tim A. H.;
Krieger, E.;
Joosten, Robbie P.;
Vriend, Gert

Publication type:

Article

Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D1140, doi. 10.1093/nar/gku1092

By:

Santos, Alberto;
Wernersson, Rasmus;
Jensen, Lars Juhl

Publication type:

Article

Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D1071, doi. 10.1093/nar/gku1011

By:

Kibbe, Warren A.;
Arze, Cesar;
Felix, Victor;
Mitraka, Elvira;
Bolton, Evan;
Fu, Gang;
Mungall, Christopher J.;
Binder, Janos X.;
Malone, James;
Vasant, Drashtti;
Parkinson, Helen;
Schriml, Lynn M.

Publication type:

Article

Proteome TopFIND 3.0 with TopFINDer and PathFINDer: database and analysis tools for the association of protein termini to pre- and post-translational events.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D290, doi. 10.1093/nar/gku1012

By:

Fortelny, Nikolaus;
Yang, Sharon;
Pavlidis, Paul;
Lange, Philipp F.;
Overall, Christopher M.

Publication type:

Article

BCCTBbp: the Breast Cancer Campaign Tissue Bank bioinformatics portal.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D831, doi. 10.1093/nar/gku984

By:

Cutts, Rosalind J.;
Guerra-Assunção, José Afonso;
Gadaleta, Emanuela;
Dayem Ullah, Abu Z.;
Chelala, Claude

Publication type:

Article

RNAcentral: an international database of ncRNA sequences.

Published in:: Nucleic Acids Research, 2015, v. 43, n. D1, p. D123, doi. 10.1093/nar/gku991
Publication type:: Article

lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D168, doi. 10.1093/nar/gku988

By:

Quek, Xiu Cheng;
Thomson, Daniel W.;
Maag, Jesper L.V.;
Bartonicek, Nenad;
Signal, Bethany;
Clark, Michael B.;
Gloss, Brian S.;
Dinger, Marcel E.

Publication type:

Article

The complex portal - an encyclopaedia of macromolecular complexes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D479, doi. 10.1093/nar/gku975

By:

Meldal, Birgit H.M.;
Forner-Martinez, Oscar;
Costanzo, Maria C.;
Dana, Jose;
Demeter, Janos;
Dumousseau, Marine;
Dwight, Selina S.;
Gaulton, Anna;
Licata, Luana;
Melidoni, Anna N.;
Ricard-Blum, Sylvie;
Roechert, Bernd;
Skyzypek, Marek S.;
Tiwari, Manu;
Velankar, Sameer;
Wong, Edith D.;
Hermjakob, Henning;
Orchard, Sandra

Publication type:

Article

dbSNO 2.0: a resource for exploring structural environment, functional and disease association and regulatory network of protein S-nitrosylation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D503, doi. 10.1093/nar/gku1176

By:

Chen, Yi-Ju;
Lu, Cheng-Tsung;
Su, Min-Gang;
Huang, Kai-Yao;
Ching, Wei-Chieh;
Yang, Hsiao-Hsiang;
Liao, Yen-Chen;
Chen, Yu-Ju;
Lee, Tzong-Yi

Publication type:

Article

ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D369, doi. 10.1093/nar/gku1118

By:

Sehnal, David;
Svobodová Vařeková, Radka;
Pravda, Lukáš;
Ionescu, Crina-Maria;
Geidl, Stanislav;
Horský, Vladimír;
Jaiswal, Deepti;
Wimmerová, Michaela;
Koča, Jaroslav

Publication type:

Article

The UCSC Cancer Genomics Browser: update 2015.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D812, doi. 10.1093/nar/gku1073

By:

Goldman, Mary;
Craft, Brian;
Swatloski, Teresa;
Cline, Melissa;
Morozova, Olena;
Diekhans, Mark;
Haussler, David;
Zhu, Jingchun

Publication type:

Article

CODEX: a next-generation sequencing experiment database for the haematopoietic and embryonic stem cell communities.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D1117

By:

Sánchez-Castillo, Manuel;
Ruau, David;
Wilkinson, Adam C.;
Ng, Felicia S.L.;
Hannah, Rebecca;
Diamanti, Evangelia;
Lombard, Patrick;
Wilson, Nicola K.;
Gottgens, Berthold

Publication type:

Article

Nucleic Acids Research: Editorial Board.

Published in:: Nucleic Acids Research, 2015, v. 43, n. D1, p. ii, doi. 10.1093/nar/gkv022
Publication type:: Article

OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D250, doi. 10.1093/nar/gku1220

By:

Kriventseva, Evgenia V.;
Tegenfeldt, Fredrik;
Petty, Tom J.;
Waterhouse, Robert M.;
Simão, Felipe A.;
Pozdnyakov, Igor A.;
Ioannidis, Panagiotis;
Zdobnov, Evgeny M.

Publication type:

Article

An update on LNCipedia: a database for annotated human lncRNA sequences.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D174, doi. 10.1093/nar/gku1060

By:

Volders, Pieter-Jan;
Verheggen, Kenneth;
Menschaert, Gerben;
Vandepoele, Klaas;
Martens, Lennart;
Vandesompele, Jo;
Mestdagh, Pieter

Publication type:

Article

T3DB: the toxic exposome database.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D928, doi. 10.1093/nar/gku1004

By:

Wishart, David;
Arndt, David;
Pon, Allison;
Sajed, Tanvir;
Guo, An Chi;
Djoumbou, Yannick;
Knox, Craig;
Wilson, Michael;
Liang, Yongjie;
Grant, Jason;
Liu, Yifeng;
Goldansaz, Seyed Ali;
Rappaport, Stephen M.

Publication type:

Article

HAMAP in 2015: updates to the protein family classification and annotation system.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D1064, doi. 10.1093/nar/gku1002

By:

Pedruzzi, Ivo;
Rivoire, Catherine;
Auchincloss, Andrea H.;
Coudert, Elisabeth;
Keller, Guillaume;
de Castro, Edouard;
Baratin, Delphine;
Cuche, Béatrice A.;
Bougueleret, Lydie;
Poux, Sylvain;
Redaschi, Nicole;
Xenarios, Ioannis;
Bridge, Alan

Publication type:

Article

The Comparative Toxicogenomics Database's 10th year anniversary: update 2015.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D914, doi. 10.1093/nar/gku935

By:

Davis, Allan Peter;
Grondin, Cynthia J.;
Lennon-Hopkins, Kelley;
Saraceni-Richards, Cynthia;
Sciaky, Daniela;
King, Benjamin L.;
Wiegers, Thomas C.;
Mattingly, Carolyn J.

Publication type:

Article

Cancer3D: understanding cancer mutations through protein structures.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D968, doi. 10.1093/nar/gku1140

By:

Porta-Pardo, Eduard;
Hrabe, Thomas;
Godzik, Adam

Publication type:

Article

MBGD update 2015: microbial genome database for flexible ortholog analysis utilizing a diverse set of genomic data.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D270, doi. 10.1093/nar/gku1152

By:

Uchiyama, Ikuo;
Mihara, Motohiro;
Nishide, Hiroyo;
Chiba, Hirokazu

Publication type:

Article

LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D187, doi. 10.1093/nar/gku1167

By:

Ma, Lina;
Li, Ang;
Zou, Dong;
Xu, Xingjian;
Xia, Lin;
Yu, Jun;
Bajic, Vladimir B.;
Zhang, Zhang

Publication type:

Article

MoonProt: a database for proteins that are known to moonlight.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D277, doi. 10.1093/nar/gku954

By:

Mani, Mathew;
Chen, Chang;
Amblee, Vaishak;
Liu, Haipeng;
Mathur, Tanu;
Zwicke, Grant;
Zabad, Shadi;
Patel, Bansi;
Thakkar, Jagravi;
Jeffery, Constance J.

Publication type:

Article

The tmRNA website.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D138, doi. 10.1093/nar/gku1109

By:

Hudson, Corey M.;
Williams, Kelly P.

Publication type:

Article

DBTSS as an integrative platform for transcriptome, epigenome and genome sequence variation data.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D87, doi. 10.1093/nar/gku1080

By:

Suzuki, Ayako;
Wakaguri, Hiroyuki;
Yamashita, Riu;
Kawano, Shin;
Tsuchihara, Katsuya;
Sugano, Sumio;
Suzuki, Yutaka;
Nakai, Kenta

Publication type:

Article

Organ system heterogeneity DB: a database for the visualization of phenotypes at the organ system level.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D900, doi. 10.1093/nar/gku948

By:

Mannil, Deepthi;
Vogt, Ingo;
Prinz, Jeanette;
Campillos, Monica

Publication type:

Article

Open TG-GATEs: a large-scale toxicogenomics database.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D921, doi. 10.1093/nar/gku955

By:

Igarashi, Yoshinobu;
Nakatsu, Noriyuki;
Yamashita, Tomoya;
Ono, Atsushi;
Ohno, Yasuo;
Urushidani, Tetsuro;
Yamada, Hiroshi

Publication type:

Article

ProteomeScout: a repository and analysis resource for post-translational modifications and proteins.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D521, doi. 10.1093/nar/gku1154

By:

Matlock, Matthew K.;
Holehouse, Alex S.;
Naegle, Kristen M.

Publication type:

Article

INFRAFRONTIER—providing mutant mouse resources as research tools for the international scientific community.

Published in:: Nucleic Acids Research, 2015, v. 43, n. D1, p. D1171, doi. 10.1093/nar/gku1193
Publication type:: Article

The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D18, doi. 10.1093/nar/gku1120

By:

Kodama, Yuichi;
Mashima, Jun;
Kosuge, Takehide;
Katayama, Toshiaki;
Fujisawa, Takatomo;
Kaminuma, Eli;
Ogasawara, Osamu;
Okubo, Kousaku;
Takagi, Toshihisa;
Nakamura, Yasukazu

Publication type:

Article

SNP-Seek database of SNPs derived from 3000 rice genomes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D1023, doi. 10.1093/nar/gku1039

By:

Alexandrov, Nickolai;
Tai, Shuaishuai;
Wang, Wensheng;
Mansueto, Locedie;
Palis, Kevin;
Fuentes, Roven Rommel;
Ulat, Victor Jun;
Chebotarov, Dmytro;
Zhang, Gengyun;
Li, Zhikang;
Mauleon, Ramil;
Hamilton, Ruaraidh Sackville;
McNally, Kenneth L.

Publication type:

Article

Gene: a gene-centered information resource at NCBI.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D36, doi. 10.1093/nar/gku1055

By:

Brown, Garth R.;
Hem, Vichet;
Katz, Kenneth S.;
Ovetsky, Michael;
Wallin, Craig;
Ermolaeva, Olga;
Tolstoy, Igor;
Tatusova, Tatiana;
Pruitt, Kim D.;
Maglott, Donna R.;
Murphy, Terence D.

Publication type:

Article

VirusMentha: a new resource for virus-host protein interactions.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D588, doi. 10.1093/nar/gku830

By:

Calderone, Alberto;
Licata, Luana;
Cesareni, Gianni

Publication type:

Article

HIV-1, human interaction database: current status and new features.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D566, doi. 10.1093/nar/gku1126

By:

Ako-Adjei, Danso;
Fu, William;
Wallin, Craig;
Katz, Kenneth S.;
Song, Guangfeng;
Darji, Dakshesh;
Brister, J. Rodney;
Ptak, Roger G.;
Pruitt, Kim D.

Publication type:

Article

MatrixDB, the extracellular matrix interaction database: updated content, a new navigator and expanded functionalities.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D321, doi. 10.1093/nar/gku1091

By:

Launay, G.;
Salza, R.;
Multedo, D.;
Thierry-Mieg, N.;
Ricard-Blum, S.

Publication type:

Article

PNRD: a plant non-coding RNA database.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D982, doi. 10.1093/nar/gku1162

By:

Yi, Xin;
Zhang, Zhenhai;
Ling, Yi;
Xu, Wenying;
Su, Zhen

Publication type:

Article

PTMcode v2: a resource for functional associations of post-translational modifications within and between proteins.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D494, doi. 10.1093/nar/gku1081

By:

Minguez, Pablo;
Letunic, Ivica;
Parca, Luca;
Garcia-Alonso, Luz;
Dopazo, Joaquin;
Huerta-Cepas, Jaime;
Bork, Peer

Publication type:

Article

COSMIC: exploring the world's knowledge of somatic mutations in human cancer.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D805, doi. 10.1093/nar/gku1075

By:

Forbes, Simon A.;
Beare, David;
Gunasekaran, Prasad;
Leung, Kenric;
Bindal, Nidhi;
Boutselakis, Harry;
Ding, Minjie;
Bamford, Sally;
Cole, Charlotte;
Ward, Sari;
Kok, Chai Yin;
Jia, Mingming;
De, Tisham;
Teague, Jon W.;
Stratton, Michael R.;
McDermott, Ultan;
Campbell, Peter J.

Publication type:

Article

MeT-DB: a database of transcriptome methylation in mammalian cells.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D197, doi. 10.1093/nar/gku1024

By:

Liu, Hui;
Flores, Mario A;
Meng, Jia;
Zhang, Lin;
Zhao, Xinyu;
Rao, Manjeet K.;
Chen, Yidong;
Huang, Yufei

Publication type:

Article

PAIDB v2.0: exploration and analysis of pathogenicity and resistance islands.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D624, doi. 10.1093/nar/gku985

By:

Yoon, Sung Ho;
Park, Young-Kyu;
Kim, Jihyun F.

Publication type:

Article

PhosphoSitePlus, 2014: mutations, PTMs and recalibrations.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D512, doi. 10.1093/nar/gku1267

By:

Hornbeck, Peter V.;
Zhang, Bin;
Murray, Beth;
Kornhauser, Jon M.;
Latham, Vaughan;
Skrzypek, Elzbieta

Publication type:

Article

MyMpn: a database for the systems biology model organism Mycoplasma pneumoniae.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D618, doi. 10.1093/nar/gku1105

By:

Wodke, Judith A. H.;
Alibés, Andreu;
Cozzuto, Luca;
Hermoso, Antonio;
Yus, Eva;
Lluch-Senar, Maria;
Serrano, Luis;
Roma, Guglielmo

Publication type:

Article