Works matching IS 03051048 AND DT 2015 AND VI 43 AND IP 9

Results: 96

Survey of protein–DNA interactions in Aspergillus oryzae on a genomic scale.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4429, doi. 10.1093/nar/gkv334

By:

Chao Wang;
Yangyong Lv;
Bin Wang;
Chao Yin;
Ying Lin;
Li Pan

Publication type:

Article

The many faces of Dicer: the complexity of the mechanisms regulating Dicer gene expression and enzyme activities.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4365, doi. 10.1093/nar/gkv328

By:

Kurzynska-Kokorniak, Anna;
Koralewska, Natalia;
Pokornowska, Maria;
Urbanowicz, Anna;
Tworak, Aleksander;
Mickiewicz, Agnieszka;
Figlerowicz, Marek

Publication type:

Article

A novel family of integrases associated with prophages and genomic islands integrated within the tRNA-dihydrouridine synthase A (dusA) gene.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4547, doi. 10.1093/nar/gkv337

By:

Farrugia, Daniel N.;
Elbourne, Liam D. H.;
Mabbutt, Bridget C.;
Paulsen, Ian T.

Publication type:

Article

Assessing the translational landscape of myogenic differentiation by ribosome profiling.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4408, doi. 10.1093/nar/gkv281

By:

de Klerk, Eleonora;
Fokkema, Ivo F.A.C.;
Thiadens, Klaske A.M.H.;
Goeman, Jelle J.;
Palmblad, Magnus;
den Dunnen, Johan T.;
von Lindern, Marieke;
't Hoen, Peter A.C.

Publication type:

Article

Linker histone partial phosphorylation: effects on secondary structure and chromatin condensation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4463, doi. 10.1093/nar/gkv304

By:

Lopez, Rita;
Sarg, Bettina;
Lindner, Herbert;
Bartolomé, Salvador;
Ponte, Inma;
Suau, Pedro;
Roque, Alicia

Publication type:

Article

Functional interplay between the RK motif and linker segment dictates Oct4–DNA recognition.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4381, doi. 10.1093/nar/gkv323

By:

Xiangqian Kong;
Jian Liu;
Lianchun Li;
Liyan Yue;
Lihong Zhang;
Hualiang Jiang;
Xin Xie;
Cheng Luo

Publication type:

Article

Major centers of motion in the large ribosomal RNAs.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4640, doi. 10.1093/nar/gkv289

By:

Paci, Maxim;
Fox, George E.

Publication type:

Article

A serine–arginine-rich (SR) splicing factor modulates alternative splicing of over a thousand genes in Toxoplasma gondii.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4661, doi. 10.1093/nar/gkv311

By:

Yeoh, Lee M.;
Goodman, Christopher D.;
Hall, Nathan E.;
van Dooren, Giel G.;
McFadden, Geoffrey I.;
Ralph, Stuart A.

Publication type:

Article

Live cell imaging of duplex siRNA intracellular trafficking.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4650, doi. 10.1093/nar/gkv307

By:

Hirsch, Markus;
Helm, Mark

Publication type:

Article

Structural and functional analysis of the Rpf2-Rrs1 complex in ribosome biogenesis.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4746, doi. 10.1093/nar/gkv305

By:

Nozomi Asano;
Koji Kato;
Akiyoshi Nakamura;
Keisuke Komoda;
Isao Tanaka;
Min Yao

Publication type:

Article

Unique C. elegans telomeric overhang structures reveal the evolutionarily conserved properties of telomeric DNA.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4733, doi. 10.1093/nar/gkv296

By:

Školáková, Petra;
Foldynová-Trantírková, Silvie;
Bednaráová, Klára;
Fiala, Radovan;
Vorlíčková, Michaela;
Trantírek, Lukáš

Publication type:

Article

AKT phosphorylates H3-threonine 45 to facilitate termination of gene transcription in response to DNA damage.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4505, doi. 10.1093/nar/gkv176

By:

Jong-Hyuk Lee;
Byung-Hee Kang;
Hyonchol Jang;
TaeWan Kim;
Jinmi Choi;
Sojung Kwak;
Jungwon Han;
Eun-Jung Cho;
Hong-Duk Youn

Publication type:

Article

Fast and sensitive detection of indels induced by precise gene targeting.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 1, doi. 10.1093/nar/gkv126

By:

Zhang Yang;
Steentoft, Catharina;
Hauge, Camilla;
Hansen, Lars;
Thomsen, Allan Lind;
Niola, Francesco;
Vester-Christensen, Malene B.;
Frödin, Morten;
Clausen, Henrik;
Wandall, Hans H.;
Bennett, Eric P.

Publication type:

Article

RNAe: an effective method for targeted protein translation enhancement by artificial non-coding RNA with SINEB2 repeat.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 1, doi. 10.1093/nar/gkv125

By:

Yi Yao;
Shouhong Jin;
Haizhou Long;
Yingting Yu;
Zhenming Zhang;
Ge Cheng;
Chengwei Xu;
Yan Ding;
Qian Guan;
Ning Li;
Suneng Fu;
Xiang-Jun Chen;
Yong-Bin Yan;
Hanshuo Zhang;
Pei Tong;
Yue Tan;
Yang Yu;
Shushu Fu;
Juan Li;
Guang-Jun He

Publication type:

Article

SC3-seq: a method for highly parallel and quantitative measurement of single-cell gene expression.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 1, doi. 10.1093/nar/gkv134

By:

Tomonori Nakamura;
Yukihiro Yabuta;
Ikuhiro Okamoto;
Shinya Aramaki;
Shihori Yokobayashi;
Kazuki Kurimoto;
Kiyotoshi Sekiguchi;
Masato Nakagawa;
Takuya Yamamoto;
Mitinori Saitou

Publication type:

Article

The B-WICH chromatin-remodelling complex regulates RNA polymerase III transcription by promoting Max-dependent c-Myc binding.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4477, doi. 10.1093/nar/gkv312

By:

Sadeghifar, Fatemeh;
Böhm, Stefanie;
Vintermist, Anna;
Farrants, Ann-Kristin Östlund

Publication type:

Article

DNA damage-induced activation of CUL4B targets HUWE1 for proteasomal degradation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4579, doi. 10.1093/nar/gkv325

By:

Juan Yi;
Guang Lu;
Li Li;
Xiaozhen Wang;
Li Cao;
Ming Lin;
Sha Zhang;
Genze Shao

Publication type:

Article

2′-Fluoro-modified phosphorothioate oligonucleotide can cause rapid degradation of P54nrb and PSF.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4569, doi. 10.1093/nar/gkv298

By:

Wen Shen;
Xue-hai Liang;
Hong Sun;
Crooke, Stanley T.

Publication type:

Article

CWC22-dependent pre-mRNA splicing and eIF4A3 binding enables global deposition of exon junction complexes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4687, doi. 10.1093/nar/gkv320

By:

Steckelberg, Anna-Lena;
Altmueller, Janine;
Dieterich, Christoph;
Gehring, Niels H.

Publication type:

Article

The HIV-1 Rev response element (RRE) adopts alternative conformations that promote different rates of virus replication.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4676, doi. 10.1093/nar/gkv313

By:

Sherpa, Chringma;
Rausch, Jason W.;
Le Grice, Stuart F. J.;
Hammarskjold, Marie-Louise;
Rekosh, David

Publication type:

Article

Regulation of NEIL1 protein abundance by RAD9 is important for efficient base excision repair.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4531, doi. 10.1093/nar/gkv327

By:

Panigrahi, Sunil K.;
Hopkins, Kevin M.;
Lieberman, Howard B.

Publication type:

Article

Protein degradation and dynamic tRNA thiolation fine-tune translation at elevated temperatures.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4701, doi. 10.1093/nar/gkv322

By:

Tyagi, Kshitiz;
Pedrioli, Patrick G. A.

Publication type:

Article

multiSNV: a probabilistic approach for improving detection of somatic point mutations from multiple related tumour samples.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. e61, doi. 10.1093/nar/gkv135

By:

Josephidou, Malvina;
Lynch, Andy G.;
Tavaré, Simon

Publication type:

Article

Integrative genomic analysis reveals widespread enhancer regulation by p53 in response to DNA damage.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4447, doi. 10.1093/nar/gkv284

By:

Younger, Scott T.;
Kenzelmann-Broz, Daniela;
Heiyoun Jung;
Attardi, Laura D.;
Rinn, John L.

Publication type:

Article

Determinants of the CmoB carboxymethyl transferase utilized for selective tRNA wobble modification.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4602, doi. 10.1093/nar/gkv206

By:

Jungwook Kim;
Hui Xiao;
Koh, Junseock;
Yikai Wang;
Bonanno, Jeffrey B.;
Thomas, Keisha;
Babbitt, Patricia C.;
Brown, Shoshana;
Young-Sam Lee;
Almo, Steven C.

Publication type:

Article

A method for mutagenesis of mouse mtDNA and a resource of mouse mtDNA mutations for modeling human pathological conditions.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. e62, doi. 10.1093/nar/gkv140

By:

Fayzulin, Rafik Z.;
Perez, Michael;
Kozhukhar, Natalia;
Spadafora, Domenico;
Wilson, Glenn L.;
Alexeyev, Mikhail F.

Publication type:

Article

The COP9 signalosome is vital for timely repair of DNA double-strand breaks.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4517, doi. 10.1093/nar/gkv270

By:

Meir, Michal;
Galanty, Yaron;
Kashani, Lior;
Blank, Michael;
Khosravi, Rami;
Fernández-Ávila, María Jesús;
Cruz-García, Andrés;
Star, Ayelet;
Shochot, Lea;
Thomas, Yann;
Garrett, Lisa J.;
Chamovitz, Daniel A.;
Bodine, David M.;
Kurz, Thimo;
Huertas, Pablo;
Ziv, Yael;
Shiloh, Yosef

Publication type:

Article

NMD3 regulates both mRNA and rRNA nuclear export in African trypanosomes via an XPOI-linked pathway.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4491, doi. 10.1093/nar/gkv330

By:

Bühlmann, Melanie;
Walrad, Pegine;
Rico, Eva;
Ivens, Alasdair;
Capewell, Paul;
Naguleswaran, Arunasalam;
Roditi, Isabel;
Matthews, Keith R.

Publication type:

Article

Generation of a conditionally self-eliminating HAC gene delivery vector through incorporation of a tTA<sup>VP64</sup> expression cassette.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. e57, doi. 10.1093/nar/gkv124

By:

Kononenko, Artem V.;
Lee, Nicholas C.O.;
Liskovykh, Mikhail;
Masumoto, Hiroshi;
Earnshaw, William C.;
Larionov, Vladimir;
Kouprina, Natalay

Publication type:

Article

A variable DNA recognition site organization establishes the LiaR-mediated cell envelope stress response of enterococci to daptomycin

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4758, doi. 10.1093/nar/gkv321

By:

Davlieva, Milya;
Yiwen Shi;
Leonard, Paul G.;
Johnson, Troy A.;
Zianni, Michael R.;
Arias, Cesar A.;
Ladbury, John E.;
Shamoo, Yousif

Publication type:

Article

Splice-shifting oligonucleotide (SSO) mediated blocking of an exonic splicing enhancer (ESE) created by the prevalent c.903+469T>C MTRR mutation corrects splicing and restores enzyme activity in patient cells.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4627, doi. 10.1093/nar/gkv275

By:

Palhais, Bruno;
Præstegaard, Veronica S.;
Sabaratnam, Rugivan;
Doktor, Thomas Koed;
Lutz, Seraina;
Burda, Patricie;
Suormala, Terttu;
Baumgartner, Matthias;
Fowler, Brian;
Bruun, Gitte Hoffmann;
Andersen, Henriette Skovgaard;
Kožich, Viktor;
Andresen, Brage Storstein

Publication type:

Article

Splicing of many human genes involves sites embedded within introns.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4721, doi. 10.1093/nar/gkv386

By:

Kelly, Steven;
Georgomanolis, Theodore;
Zirkel, Anne;
Diermeier, Sarah;
O’Reilly, Dawn;
Murphy, Shona;
Längst, Gernot;
Cook, Peter R.;
Papantonis, Argyris

Publication type:

Article

Implications of macromolecular crowding and reducing conditions for in vitro ribosome construction.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4774, doi. 10.1093/nar/gkv329

By:

Fritz, Brian R.;
Jamil, Osman K.;
Jewett, Michael C.

Publication type:

Article

Evolution of intraspecific transcriptomic landscapes in yeasts

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4558, doi. 10.1093/nar/gkv363

By:

Brion, Christian;
Pflieger, David;
Friedrich, Anne;
Schacherer, Joseph

Publication type:

Article

Genetic analysis of L123 of the tRNA-mimicking eukaryote release factor eRF1, an amino acid residue critical for discrimination of stop codons

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4591, doi. 10.1093/nar/gkv376

By:

Kazuki Saito;
Koichi Ito

Publication type:

Article

ChiNet uncovers rewired transcription subnetworks in tolerant yeast for advanced biofuels conversion

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4393, doi. 10.1093/nar/gkv358

By:

Zhang, Yang;
Liu, Z. Lewis;
Song, Mingzhou

Publication type:

Article

BLM unfolds G-quadruplexes in different structural environments through different mechanisms.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4614, doi. 10.1093/nar/gkv361

By:

Wen-Qiang Wu;
Xi-Miao Hou;
Ming Li;
Shuo-Xing Dou;
Xu-Guang Xi

Publication type:

Article

A variable DNA recognition site organization establishes the LiaR-mediated cell envelope stress response of enterococci to daptomycin.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4758, doi. 10.1093/nar/gkv321

By:

Davlieva, Milya;
Shi, Yiwen;
Leonard, Paul G.;
Johnson, Troy A.;
Zianni, Michael R.;
Arias, Cesar A.;
Ladbury, John E.;
Shamoo, Yousif

Publication type:

Article

The effect of RNA base lesions on mRNA translation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4713, doi. 10.1093/nar/gkv377

By:

Calabretta, Alessandro;
Küpfer, Pascal A.;
Leumann, Christian J.

Publication type:

Article

A role for WDR5 in TRA-1/Gli mediated transcriptional control of the sperm/oocyte switch in C. elegans.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 5567, doi. 10.1093/nar/gku221

By:

Tengguo Li;
Kelly, William G.

Publication type:

Article

Mechanistic insight into ligand binding to G-quadruplex DNA.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 5447, doi. 10.1093/nar/gku247

By:

Saverio Di Leva, Francesco;
Novellino, Ettore;
Cavalli, Andrea;
Parrinello, Michele;
Limongelli, Vittorio

Publication type:

Article

Exonic splicing signals impose constraints upon the evolution of enzymatic activity.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 5790, doi. 10.1093/nar/gku240

By:

Falanga, Alessia;
Stojanović, Ozren;
Kiffer-Moreira, Tina;
Pinto, Sofia;
Millán, José Luis;
Vlahoviček, Kristian;
Baralle, Marco

Publication type:

Article

A novel mechanism for regulating the activity of proliferating cell nuclear antigen by a small protein.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 5776, doi. 10.1093/nar/gku239

By:

Zhuo Li;
Huang, Richard Y.-C.;
Yopp, Daniel C.;
Hileman, Travis H.;
Santangelo, Thomas J.;
Hurwitz, Jerard;
Hudgens, Jeffrey W.;
Kelman, Zvi

Publication type:

Article

Dissecting the chemical interactions and substrate structural signatures governing RNA polymerase II trigger loop closure by synthetic nucleic acid analogues.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 5863, doi. 10.1093/nar/gku238

By:

Liang Xu;
Butler, Kyle Vincent;
Chong, Jenny;
Wengel, Jesper;
Kool, Eric T.;
Dong Wang

Publication type:

Article

Human MUS81-EME2 can cleave a variety of DNA structures including intact Holliday junction and nicked duplex.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 5846, doi. 10.1093/nar/gku237

By:

Amangyeld, Tamir;
Yong-Keol Shin;
Miju Lee;
Buki Kwon;
Yeon-Soo Seo

Publication type:

Article

AMPK regulates histone H2B O-GlcNAcylation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 5594, doi. 10.1093/nar/gku236

By:

Qiuran Xu;
Caihong Yang;
Yu Du;
Yali Chen;
Hailong Liu;
Min Deng;
Haoxing Zhang;
Lei Zhang;
Tongzheng Liu;
Qingguang Liu;
Liewei Wang;
Zhenkun Lou;
Huadong Pei

Publication type:

Article

Crystal structure of Saccharomyces cerevisiae mitochondrial GatFAB reveals a novel subunit assembly in tRNA-dependent amidotransferases.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 6052, doi. 10.1093/nar/gku234

By:

Araiso, Yuhei;
Huot, Jonathan L.;
Takuya Sekiguchi;
Frechin, Mathieu;
Fischer, Frédéric;
Enkler, Ludovic;
Senger, Bruno;
Ryuichiro Ishitani;
Becker, Hubert D.;
Osamu Nureki

Publication type:

Article

Synthetic circuit for exact adaptation and fold-change detection.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 6078, doi. 10.1093/nar/gku233

By:

Jongmin Kim;
Khetarpal, Ishan;
Shaunak Sen;
Murray, Richard M.

Publication type:

Article

The histone chaperones Vps75 and Nap1 form ring-like, tetrameric structures in solution.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 6038, doi. 10.1093/nar/gku232

By:

Bowman, Andrew;
Hammond, Colin M.;
Stirling, Andrew;
Ward, Richard;
Weifeng Shang;
El-Mkami, Hassane;
Robinson, David A.;
Svergun, Dmitri I.;
Norman, David G.;
Owen-Hughes, Tom

Publication type:

Article

Similarity in targets with REST points to neural and glioblastoma related miRNAs.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 5436, doi. 10.1093/nar/gku231

By:

Gebhardt, Marie L.;
Reuter, Stefanie;
Mrowka, Ralf;
Andrade-Navarro, Miguel A.

Publication type:

Article