Works matching IS 03051048 AND DT 2015 AND VI 43 AND IP 8

Results: 47

Molecular crowding enhances facilitated diffusion of two human DNA glycosylases.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4087, doi. 10.1093/nar/gkv301

By:

Cravens, Shannen L.;
Schonhoft, Joseph D.;
Rowland, Meng M.;
Rodriguez, Alyssa A.;
Anderson, Breeana G.;
Stivers, James T.

Publication type:

Article

Are mutagenic non D-loop direct repeat motifs in mitochondrial DNA under a negative selection pressure?

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4098, doi. 10.1093/nar/gkv299

By:

Lakshmanan, Lakshmi Narayanan;
Gruber, Jan;
Halliwell, Barry;
Gunawan, Rudiyanto

Publication type:

Article

An update on LNCipedia: a database for annotated human lncRNA sequences.

Published in:: Nucleic Acids Research, 2015, v. 43, n. 8, p. 4363, doi. 10.1093/nar/gkv295
Publication type:: Article

Reconstructing genome-scale metabolic models with merlin.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 3899, doi. 10.1093/nar/gkv294

By:

Dias, Oscar;
Rocha, Miguel;
Ferreira, Eugénio C.;
Rocha, Isabel

Publication type:

Article

A universal strategy for regulating mRNA translation in prokaryotic and eukaryotic cells.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4353, doi. 10.1093/nar/gkv290

By:

Cao, Jicong;
Arha, Manish;
Sudrik, Chaitanya;
Mukherjee, Abhirup;
Xia Wu;
Kane, Ravi S.

Publication type:

Article

A common tRNA modification at an unusual location: the discovery of wyosine biosynthesis in mitochondria.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4262, doi. 10.1093/nar/gkv286

By:

Sample, Paul J.;
Kořený, Ludĕk;
Paris, Zdenĕk;
Gaston, Kirk W.;
Rubio, Mary Anne T.;
Fleming, Ian M. C.;
Hinger, Scott;
Horáková, Eva;
Limbach, Patrick A.;
Lukeš, Julius;
Alfonzo, Juan D.

Publication type:

Article

Gadd45a promotes DNA demethylation through TDG.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 3986, doi. 10.1093/nar/gkv283

By:

Zheng Li;
Tian-Peng Gu;
Weber, Alain R.;
Jia-Zhen Shen;
Bin-Zhong Li;
Zhi-Guo Xie;
Ruichuan Yin;
Fan Guo;
Xiaomeng Liu;
Fuchou Tang;
Hailin Wang;
Primo Schär;
Guo-Liang Xu

Publication type:

Article

Uncoupling histone turnover from transcription-associated histone H3 modifications.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 3972, doi. 10.1093/nar/gkv282

By:

Ferrari, Paolo;
Strubin, Michel

Publication type:

Article

Nuclear pore components affect distinct stages of intron-containing gene expression.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4249, doi. 10.1093/nar/gkv280

By:

Bonnet, Amandine;
Bretes, Hugo;
Palancade, Benoit

Publication type:

Article

Nucleosomes undergo slow spontaneous gaping.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 3964, doi. 10.1093/nar/gkv276

By:

Ngo, Thuy T. M.;
Taekjip Ha

Publication type:

Article

A functional screen identifies miRNAs that inhibit DNA repair and sensitize prostate cancer cells to ionizing radiation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4075, doi. 10.1093/nar/gkv273

By:

Koji Hatano;
Kumar, Binod;
Yonggang Zhang;
Coulter, Jonathan B.;
Hedayati, Mohammad;
Mears, Brian;
Xiaohua Ni;
Kudrolli, Tarana A.;
Chowdhury, Wasim H.;
Rodriguez, Ronald;
DeWeese, Theodore L.;
Lupold, Shawn E.

Publication type:

Article

Differences in genome-wide repeat sequence instability conferred by proofreading and mismatch repair defects.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4067, doi. 10.1093/nar/gkv271

By:

Lujan, Scott A.;
Clark, Alan B.;
Kunkel, Thomas A.

Publication type:

Article

RNA editing by T7 RNA polymerase bypasses InDel mutations causing unexpected phenotypic changes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 3950, doi. 10.1093/nar/gkv269

By:

Wons, Ewa;
Furmanek-Blaszk, Beata;
Sektas, Marian

Publication type:

Article

Effects of Hfq on the conformation and compaction of DNA.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4332, doi. 10.1093/nar/gkv268

By:

Kai Jiang;
Ce Zhang;
Guttula, Durgarao;
Fan Liu;
van Kan, Jeroen A.;
Lavelle, Christophe;
Kubiak, Krzysztof;
Malabirade, Antoine;
Lapp, Alain;
Arluison, Véronique;
van der Maarel, Johan R. C.

Publication type:

Article

Heterogeneous dynamics in DNA site discrimination by the structurally homologous DNA-binding domains of ETS-family transcription factors.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4322, doi. 10.1093/nar/gkv267

By:

Gaofei He;
Tolic, Ana;
Bashkin, James K.;
Poon, Gregory M. K.

Publication type:

Article

Heme activation by DNA: isoguanine pentaplexes, but not quadruplexes, bind heme and enhance its oxidative activity.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4191, doi. 10.1093/nar/gkv266

By:

Shumayrikh, Nisreen;
Yu Chuan Huang;
Sen, Dipankar

Publication type:

Article

RNA polymerase II pausing can be retained or acquired during activation of genes involved in the epithelial to mesenchymal transition.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 3938, doi. 10.1093/nar/gkv263

By:

Samarakkody, Ann;
Abbas, Ata;
Scheidegger, Adam;
Warns, Jessica;
Nnoli, Oscar;
Jokinen, Bradley;
Zarns, Kris;
Kubat, Brooke;
Dhasarathy, Archana;
Nechaev, Sergei

Publication type:

Article

The interaction of mycobacterial protein Rv2966c with host chromatin is mediated through non-CpG methylation and histone H3/H4 binding.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 3922, doi. 10.1093/nar/gkv261

By:

Sharma, Garima;
Upadhyay, Sandeep;
Srilalitha, M.;
Nandicoori, Vinay K.;
Khosla, Sanjeev

Publication type:

Article

Regulation of yeast DNA polymerase δ-mediated strand displacement synthesis by 5'-flaps.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4179, doi. 10.1093/nar/gkv260

By:

Koc, Katrina N.;
Stodola, Joseph L.;
Burgers, Peter M.;
Galletto, Roberto

Publication type:

Article

Significance of ligand interactions involving Hop2-Mnd1 and the RAD51 and DMC1 recombinases in homologous DNA repair and XX ovarian dysgenesis.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4055, doi. 10.1093/nar/gkv259

By:

Weixing Zhao;
Patrick Sung

Publication type:

Article

Epigenetic regulation of intragenic transposable elements impacts gene transcription in Arabidopsis thaliana.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 3911, doi. 10.1093/nar/gkv258

By:

Le, Tu N.;
Yuji Miyazaki;
Shohei Takuno;
Hidetoshi Saze

Publication type:

Article

SubmiRine: assessing variants in microRNA targets using clinical genomic data sets.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 3886, doi. 10.1093/nar/gkv256

By:

Maxwell, Evan K.;
Campbell, Joshua D.;
Spira, Avrum;
Baxevanis, Andreas D.

Publication type:

Article

Modeling the relationship of epigenetic modifications to transcription factor binding.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 3873, doi. 10.1093/nar/gkv255

By:

Liang Liu;
Guangxu Jin;
Xiaobo Zhou

Publication type:

Article

The structural impact of DNA mismatches.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4309, doi. 10.1093/nar/gkv254

By:

Rossetti, Giulia;
Dans, Pablo D.;
Gomez-Pinto, Irene;
Ivani, Ivan;
Gonzalez, Carlos;
Orozco, Modesto

Publication type:

Article

The NEIL glycosylases remove oxidized guanine lesions from telomeric and promoter quadruplex DNA structures.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4039, doi. 10.1093/nar/gkv252

By:

Jia Zhou;
Fleming, Aaron M.;
Averill, April M.;
Burrows, Cynthia J.;
Wallace, Susan S.

Publication type:

Article

Structures of Escherichia coli DNA adenine methyltransferase (Dam) in complex with a non-GATC sequence: potential implications for methylation-independent transcriptional repression.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4296, doi. 10.1093/nar/gkv251

By:

Horton, John R.;
Xing Zhang;
Blumenthal, Robert M.;
Xiaodong Cheng

Publication type:

Article

Disruption of PARP1 function inhibits base excision repair of a sub-set of DNA lesions.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4028, doi. 10.1093/nar/gkv250

By:

Reynolds, Pamela;
Cooper, Sarah;
Lomax, Martine;
O'Neill, Peter

Publication type:

Article

Subunit compositions of Arabidopsis RNA polymerases I and III reveal Pol I- and Pol III-specific forms of the AC40 subunit and alternative forms of the C53 subunit.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4163, doi. 10.1093/nar/gkv247

By:

Ream, Thomas S.;
Haag, Jeremy R.;
Pontvianne, Frederic;
Nicora, Carrie D.;
Norbeck, Angela D.;
Paša-Tolić, Ljiljana;
Pikaard, Craig S.

Publication type:

Article

RBM7 subunit of the NEXT complex binds U-rich sequences and targets 3'-end extended forms of snRNAs.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4236, doi. 10.1093/nar/gkv240

By:

Hrossova, Dominika;
Sikorsky, Tomas;
Potesil, David;
Bartosovic, Marek;
Pasulka, Josef;
Zdrahal, Zbynek;
Stefl, Richard;
Vanacova, Stepanka

Publication type:

Article

The feedback control of UPF3 is crucial for RNA surveillance in plants.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4219, doi. 10.1093/nar/gkv237

By:

Degtiar, Evgeniya;
Fridman, Adi;
Gottlieb, Dror;
Vexler, Karina;
Berezin, Irina;
Farhi, Ronit;
Golani, Linoy;
Shaul, Orit

Publication type:

Article

Heat-induced ribosome pausing triggers mRNA co-translational decay in Arabidopsis thaliana.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4121, doi. 10.1093/nar/gkv234

By:

Merret, Rémy;
Nagarajan, Vinay K.;
Carpentier, Marie-Christine;
Park, Sunhee;
Favory, Jean-Jacques;
Descombin, Julie;
Picart, Claire;
Yee-yung Charng;
Green, Pamela J.;
Deragon, Jean-Marc;
Bousquet-Antonelli, Cécile

Publication type:

Article

Splicing factor SRSF1 negatively regulates alternative splicing of MDM2 under damage.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4202, doi. 10.1093/nar/gkv223

By:

Comiskey, Jr, Daniel F.;
Jacob, Aishwarya G.;
Singh, Ravi K.;
Tapia-Santos, Aixa S.;
Chandler, Dawn S.

Publication type:

Article

Specificity of the ModA11, ModA12 and ModD1 epigenetic regulator N<sup>6</sup>-adenine DNA methyltransferases of Neisseria meningitidis.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4150, doi. 10.1093/nar/gkv219

By:

Seib, Kate L.;
Jen, Freda E. -C.;
Tan, Aimee;
Scott, Adeana L.;
Kumar, Ritesh;
Power, Peter M.;
Li-Tzu Chen;
Hsing-Ju Wu;
Wang, Andrew H. -J.;
Hill, Dorothea M. C.;
Luyten, Yvette A.;
Morgan, Richard D.;
Roberts, Richard J.;
Maiden, Martin C. J.;
Boitano, Matthew;
Clark, Tyson A.;
Korlach, Jonas;
Rao, Desirazu N.;
Jennings, Michael P.

Publication type:

Article

Suppression of the E. coli SOS response by dNTP pool changes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4109, doi. 10.1093/nar/gkv217

By:

Maslowska, Katarzyna H.;
Makiela-Dzbenska, Karolina;
Fijalkowska, Iwona J.;
Schaaper, Roel M.

Publication type:

Article

Integrating motif, DNA accessibility and gene expression data to build regulatory maps in an organism.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 3998, doi. 10.1093/nar/gkv195

By:

Blatti, Charles;
Kazemian, Majid;
Wolfe, Scot;
Brodsky, Michael;
Sinha, Saurabh

Publication type:

Article

The hexameric structure of the human mitochondrial replicative helicase Twinkle.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4284, doi. 10.1093/nar/gkv189

By:

Fernández-Millán, Pablo;
Lázaro, Melisa;
Cansız-Arda, Şirin;
Gerhold, Joachim M.;
Rajala, Nina;
Schmitz, Claus-A.;
Silva-Espiña, Cristina;
Gil, David;
Bernadó, Pau;
Valle, Mikel;
Spelbrink, Johannes N.;
Solà, Maria

Publication type:

Article

Distribution of DNA-condensing protein complexes in the adenovirus core.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4274, doi. 10.1093/nar/gkv187

By:

Pérez-Berná, Ana J.;
Marion, Sanjin;
Chichón, F. Javier;
Fernández, José J.;
Winkler, Dennis C.;
Carrascosa, José L.;
Steven, Alasdair C.;
Šiber, Antonio;
Martín, Carmen San

Publication type:

Article

Active displacement of RecA filaments by UvrD translocase activity.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4133, doi. 10.1093/nar/gkv186

By:

Petrova, Vessela;
Chen, Stefanie H.;
Molzberger, Eileen T.;
Tomko, Eric;
Chitteni-Pattu, Sindhu;
Haifeng Jia;
Ordabayev, Yerdos;
Lohman, Timothy M.;
Cox, Michael M.

Publication type:

Article

Selective inhibition of miR-21 by phage display screened peptide.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4342, doi. 10.1093/nar/gkv185

By:

Bose, Debojit;
Nahar, Smita;
Rai, Manish Kumar;
Ray, Arjun;
Chakraborty, Kausik;
Maiti, Souvik

Publication type:

Article

Gene-specific cell labeling using MiMIC transposons.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. e56, doi. 10.1093/nar/gkv113

By:

Gnerer, Joshua P.;
Venken, Koen J. T.;
Dierick, Herman A.

Publication type:

Article

Highly efficient CRISPR/Cas9-mediated TAR cloning of genes and chromosomal loci from complex genomes in yeast.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. e55, doi. 10.1093/nar/gkv112

By:

Lee, Nicholas C. O.;
Larionov, Vladimir;
Kouprina, Natalay

Publication type:

Article

Inferential modeling of 3D chromatin structure.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. e54, doi. 10.1093/nar/gkv100

By:

Siyu Wang;
Jinbo Xu;
Jianyang Zeng

Publication type:

Article

Following the footprints of polymorphic inversions on SNP data: from detection to association tests.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. e53, doi. 10.1093/nar/gkv073

By:

Cáceres, Alejandro;
González, Juan R.

Publication type:

Article

A rapid and sensitive high-throughput screening method to identify compounds targeting protein-nucleic acids interactions.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. e52, doi. 10.1093/nar/gkv069

By:

Alonso, Nicole;
Guillen, Roboan;
Chambers, Jeremy W.;
Fenfei Leng

Publication type:

Article

The nucleoporin Mlp2 is involved in chromosomal distribution during mitosis in trypanosomatids.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. 4013, doi. 10.1093/nar/gkv056

By:

Morelle, Christelle;
Sterkers, Yvon;
Crobu, Lucien;
MBang-Benet, Diane-Ethna;
Kuk, Nada;
Portalès, Pierre;
Bastien, Patrick;
Pagès, Michel;
Lachaud, Laurence

Publication type:

Article

CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. e51, doi. 10.1093/nar/gkv054

By:

Haberle, Vanja;
Forrest, Alistair R. R.;
Hayashizaki, Yoshihide;
Carninci, Piero;
Lenhard, Boris

Publication type:

Article

Ad 2.0: a novel recombineering platform for high-throughput generation of tailored adenoviruses.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 8, p. e50, doi. 10.1093/nar/gkv031

By:

Mück-Häusl, Martin;
Solanki, Manish;
Wenli Zhang;
Ruzsics, Zsolt;
Ehrhardt, Anja

Publication type:

Article