Works matching IS 03051048 AND DT 2015 AND VI 43 AND IP 7

Results: 45

Corrigendum.

Published in:: Nucleic Acids Research, 2015, v. 43, n. 7, p. 3872, doi. 10.1093/nar/gkv278
Publication type:: Article

Corrigendum.

Published in:: Nucleic Acids Research, 2015, v. 43, n. 7, p. 3870, doi. 10.1093/nar/gkv264
Publication type:: Article

Pathway analysis from lists of microRNAs: common pitfalls and alternative strategy.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3490, doi. 10.1093/nar/gkv249

By:

Godard, Patrice;
van Eyll, Jonathan

Publication type:

Article

The chromatin scaffold protein SAFB1 localizes SUMO-1 to the promoters of ribosomal protein genes to facilitate transcription initiation and splicing.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3605, doi. 10.1093/nar/gkv246

By:

Hui-wen Liu;
Banerjee, Tapahsama;
Xiaoyan Guan;
Freitas, Michael A.;
Parvin, Jeffrey D.

Publication type:

Article

Two RNA recognition motif-containing proteins are plant mitochondrial editing factors.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3814, doi. 10.1093/nar/gkv245

By:

Xiaowen Shi;
Hanson, Maureen R.;
Bentolila, Stéphane

Publication type:

Article

New insights into Hoogsteen base pairs in DNA duplexes from a structure-based survey.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3420, doi. 10.1093/nar/gkv241

By:

Huiqing Zhou;
Hintze, Bradley J.;
Kimsey, Isaac J.;
Sathyamoorthy, Bharathwaj;
Shan Yang;
Richardson, Jane S.;
Al-Hashimi, Hashim M.

Publication type:

Article

Mycoreovirus genome rearrangements associated with RNA silencing deficiency.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3802, doi. 10.1093/nar/gkv239

By:

Ana Eusebio-Cope;
Nobuhiro Suzuki

Publication type:

Article

PCAF-primed EZH2 acetylation regulates its stability and promotes lung adenocarcinoma progression.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3591, doi. 10.1093/nar/gkv238

By:

Junhu Wan;
Jun Zhan;
Shuai Li;
Ji Ma;
Weizhi Xu;
Chang Liu;
Xiaowei Xue;
Yuping Xie;
Weigang Fang;
Chin, Y. Eugene;
Hongquan Zhang

Publication type:

Article

A model for transcription initiation in human mitochondria.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3726, doi. 10.1093/nar/gkv235

By:

Morozov, Yaroslav I.;
Parshin, Andrey V.;
Agaronyan, Karen;
Cheung, Alan C. M.;
Anikin, Michael;
Cramer, Patrick;
Temiakov, Dmitry

Publication type:

Article

Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3478, doi. 10.1093/nar/gkv233

By:

Peng Wang;
Shangwei Ning;
Yunpeng Zhang;
Ronghong Li;
Jingrun Ye;
Zuxianglan Zhao;
Hui Zhi;
Tingting Wang;
Zheng Guo;
Xia Li

Publication type:

Article

A general approach to high-yield biosynthesis of chimeric RNAs bearing various types of functional small RNAs for broad applications.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3857, doi. 10.1093/nar/gkv228

By:

Qiu-Xia Chen;
Wei-Peng Wang;
Su Zeng;
Urayama, Shiro;
Ai-Ming Yu

Publication type:

Article

Advances in CRISPR-Cas9 genome engineering: lessons learned from RNA interference.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3407, doi. 10.1093/nar/gkv226

By:

Barrangou, Rodolphe;
Birmingham, Amanda;
Wiemann, Stefan;
Beijersbergen, Roderick L.;
Hornung, Veit;
van Brabant Smith, Anja

Publication type:

Article

Magnesium-binding architectures in RNA crystal structures: validation, binding preferences, classification and motif detection.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3789, doi. 10.1093/nar/gkv225

By:

Heping Zheng;
Shabalin, Ivan G.;
Handing, Katarzyna B.;
Bujnicki, Janusz M.;
Minor, Wladek

Publication type:

Article

mRNA maturation in giant viruses: variation on a theme.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3776, doi. 10.1093/nar/gkv224

By:

Priet, Stéphane;
Lartigue, Audrey;
Debart, Françoise;
Claverie, Jean-Michel;
Abergel, Chantal

Publication type:

Article

Cells deficient in base-excision repair reveal cancer hallmarks originating from adjustments to genetic instability.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3667, doi. 10.1093/nar/gkv222

By:

Markkanen, Enni;
Fischer, Roman;
Ledentcova, Marina;
Kessler, Benedikt M.;
Dianov, Grigory L.

Publication type:

Article

Assessing the limits of restraint-based 3D modeling of genomes and genomic domains.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3465, doi. 10.1093/nar/gkv221

By:

Trussart, Marie;
Serra, François;
Baù, Davide;
Junier, Ivan;
Serrano, Luís;
Marti-Renom, Marc A.

Publication type:

Article

Quantitative analysis of single-molecule force spectroscopy on folded chromatin fibers.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3578, doi. 10.1093/nar/gkv215

By:

He Meng;
Andresen, Kurt;
van Noort, John

Publication type:

Article

An Lnc RNA (GAS5)/SnoRNA-derived piRNA induces activation of TRAIL gene by site-specifically recruiting MLL/COMPASS-like complexes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3712, doi. 10.1093/nar/gkv214

By:

Xin He;
Xinxin Chen;
Xue Zhang;
Xiaobing Duan;
Ting Pan;
Qifei Hu;
Yijun Zhang;
Fudi Zhong;
Jun Liu;
Hong Zhang;
Juan Luo;
Kang Wu;
Gao Peng;
Haihua Luo;
Lehong Zhang;
Xiaoxi Li;
Hui Zhang

Publication type:

Article

Epstein-Barr virus transcription factor Zta acts through distal regulatory elements to directly control cellular gene expression.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3563, doi. 10.1093/nar/gkv212

By:

Ramasubramanyan, Sharada;
Osborn, Kay;
Al-Mohammad, Rajaei;
Naranjo Perez-Fernandez, Ijiel B.;
Jianmin Zuo;
Balan, Nicolae;
Godfrey, Anja;
Patel, Harshil;
Peters, Gordon;
Rowe, Martin;
Jenner, Richard G.;
Sinclair, Alison J.

Publication type:

Article

Invadolysin acts genetically via the SAGA complex to modulate chromosome structure.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3546, doi. 10.1093/nar/gkv211

By:

Rao, Shubha Gururaja;
Janiszewski, Michal M.;
Duca, Edward;
Nelson, Bryce;
Abhinav, Kanishk;
Panagakou, Ioanna;
Vass, Sharron;
Heck, Margarete M. S.

Publication type:

Article

Unwinding forward and sliding back: an intermittent unwinding mode of the BLM helicase.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3736, doi. 10.1093/nar/gkv209

By:

Shuang Wang;
Wei Qin;
Jing-Hua Li;
Ying Lu;
Ke-Yu Lu;
Da-Guan Nong;
Shuo-Xing Dou;
Chun-Hua Xu;
Xu-Guang Xi;
Ming Li

Publication type:

Article

The nuclease FAN1 is involved in DNA crosslink repair in Arabidopsis thaliana independently of the nuclease MUS81.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3653, doi. 10.1093/nar/gkv208

By:

Herrmann, Natalie J.;
Knoll, Alexander;
Puchta, Holger

Publication type:

Article

What matters for lac repressor search in vivo-sliding, hopping, intersegment transfer, crowding on DNA or recognition?

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3454, doi. 10.1093/nar/gkv207

By:

Mahmutovic, Anel;
Berg, Otto G.;
Elf, Johan

Publication type:

Article

DAP5 associates with eIF2β and eIF4AI to promote Internal Ribosome Entry Site driven translation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3764, doi. 10.1093/nar/gkv205

By:

Liberman, Noa;
Gandin, Valentina;
Svitkin, Yuri V.;
David, Maya;
Virgili, Geneviève;
Jaramillo, Maritza;
Holcik, Martin;
Nagar, Bhushan;
Kimchi, Adi;
Sonenberg, Nahum

Publication type:

Article

Mechano-chemical kinetics of DNA replication: identification of the translocation step of a replicative DNA polymerase.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3643, doi. 10.1093/nar/gkv204

By:

Morin, José A.;
Cao, Francisco J.;
Lázaro, José M.;
Arias-Gonzalez, J. Ricardo;
Valpuesta, José M.;
Carrascosa, José L.;
Salas, Margarita;
Ibarra, Borja

Publication type:

Article

Ribosome A and P sites revealed by length analysis of ribosome profiling data.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3680, doi. 10.1093/nar/gkv200

By:

Martens, Andrew T.;
Taylor, James;
Hilser, Vincent J.

Publication type:

Article

Srs2 promotes Mus81-Mms4-mediated resolution of recombination intermediates.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3626, doi. 10.1093/nar/gkv198

By:

Chavdarova, Melita;
Marini, Victoria;
Sisakova, Alexandra;
Sedlackova, Hana;
Vigasova, Dana;
Brill, Steven J.;
Lisby, Michael;
Krejci, Lumir

Publication type:

Article

Evolutionary patterns of DNA base composition and correlation to polymorphisms in DNA repair systems.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3614, doi. 10.1093/nar/gkv197

By:

Xianran Li;
Scanlon, Michael J.;
Jianming Yu

Publication type:

Article

Identification of U2AF(35)-dependent exons by RNA-Seq reveals a link between 3' splice-site organization and activity of U2AF-related proteins.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3747, doi. 10.1093/nar/gkv194

By:

Kralovicova, Jana;
Knut, Marcin;
Cross, Nicholas C. P.;
Vorechovsky, Igor

Publication type:

Article

Deacetylase inhibitors repress STAT5-mediated transcription by interfering with bromodomain and extra-terminal (BET) protein function.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3524, doi. 10.1093/nar/gkv188

By:

Pinz, Sophia;
Unser, Samy;
Buob, Dominik;
Fischer, Philipp;
Jobst, Belinda;
Rascle, Anne

Publication type:

Article

H3K9 methyltransferase G9a negatively regulates UHRF1 transcription during leukemia cell differentiation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3509, doi. 10.1093/nar/gkv183

By:

Kee-Beom Kim;
Hye-Ju Son;
Sulji Choi;
Ja Young Hahm;
Hyeonsoo Jung;
Hee Jo Baek;
Hoon Kook;
Yoonsoo Hahn;
Hyun Kook;
Sang-Beom Seo

Publication type:

Article

Chemical and structural characterization of interstrand cross-links formed between abasic sites and adenine residues in duplex DNA.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3434, doi. 10.1093/nar/gkv174

By:

Price, Nathan E.;
Catalano, Michael J.;
Shuo Liu;
Yinsheng Wang;
Gates, Kent S.

Publication type:

Article

Crystal structure of Hop2-Mnd1 and mechanistic insights into its role in meiotic recombination.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3841, doi. 10.1093/nar/gkv172

By:

Hyun-Ah Kang;
Ho-Chul Shin;
Kalantzi, Alexandra-Styliani;
Toseland, Christopher P.;
Hyun-Min Kim;
Gruber, Stephan;
Dal Peraro, Matteo;
Byung-Ha Oh

Publication type:

Article

Distinguishing between productive and abortive promoters using a random forest classifier in Mycoplasma pneumoniae.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3442, doi. 10.1093/nar/gkv170

By:

Lloréns-Rico, Verónica;
Lluch-Senar, Maria;
Serrano, Luis

Publication type:

Article

Embryonic expression of endogenous retroviral RNAs in somatic tissues adjacent to the Oikopleura germline.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3701, doi. 10.1093/nar/gkv169

By:

Henriet, Simon;
Sumic, Sara;
Doufoundou-Guilengui, Carlette;
Jensen, Marit Flo;
Grandmougin, Camille;
Fal, Kateryna;
Thompson, Eric;
Volff, Jean-Nicolas;
Chourrout, Daniel

Publication type:

Article

The structure of human SFPQ reveals a coiled-coil mediated polymer essential for functional aggregation in gene regulation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3826, doi. 10.1093/nar/gkv156

By:

Mihwa Lee;
Sadowska, Agata;
Bekere, Indra;
Diwei Ho;
Gully, Benjamin S.;
Yanling Lu;
Iyer, K. Swaminathan;
Trewhella, Jill;
Fox, Archa H.;
Bond, Charles S.

Publication type:

Article

A diverse epigenetic landscape at human exons with implication for expression.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3498, doi. 10.1093/nar/gkv153

By:

Singer, Meromit;
Kosti, Idit;
Pachter, Lior;
Mandel-Gutfreund, Yael

Publication type:

Article

The hub protein loquacious connects the microRNA and short interfering RNA pathways in mosquitoes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3688, doi. 10.1093/nar/gkv152

By:

Haac, Mary Etna;
Anderson, Michelle A. E.;
Eggleston, Heather;
Myles, Kevin M.;
Adelman, Zach N.

Publication type:

Article

Solid-phase cloning for high-throughput assembly of single and multiple DNA parts.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. e49, doi. 10.1093/nar/gkv036

By:

Lundqvist, Magnus;
Edfors, Fredrik;
Sivertsson, Åsa;
Hallström, Björn M.;
Hudson, Elton P.;
Tegel, Hanna;
Holmberg, Anders;
Uhlén, Mathias;
Rockberg, Johan

Publication type:

Article

Increased functional protein expression using nucleotide sequence features enriched in highly expressed genes in zebrafish.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. e48, doi. 10.1093/nar/gkv035

By:

Horstick, Eric J.;
Jordan, Diana C.;
Bergeron, Sadie A.;
Tabor, Kathryn M.;
Serpe, Mihaela;
Feldman, Benjamin;
Burgess, Harold A.

Publication type:

Article

limma powers differential expression analyses for RNA-sequencing and microarray studies.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. e47, doi. 10.1093/nar/gkv007

By:

Ritchie, Matthew E.;
Phipson, Belinda;
Di Wu;
Yifang Hu;
Law, Charity W.;
Wei Shi;
Smyth, Gordon K.

Publication type:

Article

An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next-generation sequencing data.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. e46, doi. 10.1093/nar/gkv002

By:

Xutao Deng;
Naccache, Samia N.;
Ng, Terry;
Federman, Scot;
Linlin Li;
Chiu, Charles Y.;
Delwart, Eric L.

Publication type:

Article

Efficient CRISPR-rAAV engineering of endogenous genes to study protein function by allele-specific RNAi.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. e45, doi. 10.1093/nar/gku1403

By:

Kaulich, Manuel;
Lee, Yeon J.;
Lönn, Peter;
Springer, Aaron D.;
Meade, Bryan R.;
Dowdy, Steven F.

Publication type:

Article

Patient-specific driver gene prediction and risk assessment through integrated network analysis of cancer omics profiles.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. e44, doi. 10.1093/nar/gku1393

By:

Bertrand, Denis;
Kern Rei Chng;
Faranak Ghazi Sherbaf;
Kiesel, Anja;
Chia, Burton K. H.;
Yee Yen Sia;
Huang, Sharon K.;
Hoon, Dave S. B.;
Liu, Edison T.;
Hillmer, Axel;
Nagarajan, Niranjan

Publication type:

Article

A robust assay to measure DNA topology-dependent protein binding affinity.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. e43, doi. 10.1093/nar/gku1381

By:

Litwin, Tamara R.;
Solà, Maria;
Holt, Ian J.;
Neuman, Keir C.

Publication type:

Article