Works matching IS 03051048 AND DT 2015 AND VI 43 AND IP 5

Results: 48

Synergistic effects of ATP and RNA binding to human DEAD-box protein DDX1.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2813, doi. 10.1093/nar/gkv106

By:

Kellner, Julian N.;
Reinstein, Jochen;
Meinhart, Anton

Publication type:

Article

Single-molecule kinetics and footprinting of DNA bis-intercalation: the paradigmatic case of Thiocoraline.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2767, doi. 10.1093/nar/gkv087

By:

Camunas-Soler, Joan;
Manosas, Maria;
Frutos, Silvia;
Tulla-Puche, Judit;
Albericio, Fernando;
Ritort, Felix

Publication type:

Article

Conditional mutual inclusive information enables accurate quantification of associations in gene regulatory networks.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 1, doi. 10.1093/nar/gku1315

By:

Xiujun Zhang;
Juan Zhao;
Jin-Kao Hao;
Xing-Ming Zhao;
Luonan Chen

Publication type:

Article

microDuMIP: target-enrichment technique for microarray-based duplex molecular inversion probes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 1, doi. 10.1093/nar/gku1188

By:

Jung-Ki Yoon;
Jinwoo Ahn;
Han Sang Kim;
Soo Min Han;
Hoon Jang;
Min Goo Lee;
Ji Hyun Lee;
Duhee Bang

Publication type:

Article

Structural plasticity of Cid1 provides a basis for its distributive RNA terminal uridylyl transferase activity.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2968, doi. 10.1093/nar/gkv122

By:

Yates, Luke A.;
Durrant, Benjamin P.;
Fleurdepine, Sophie;
Harlos, Karl;
Norbury, Chris J.;
Gilbert, Robert J. C.

Publication type:

Article

Base-resolution methylation patterns accurately predict transcription factor bindings in vivo.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2757, doi. 10.1093/nar/gkv151

By:

Tianlei Xu;
Ben Li;
Meng Zhao;
Szulwach, Keith E.;
Craig Street, R.;
Li Lin;
Bing Yao;
Feiran Zhang;
Peng Jin;
Hao Wu;
Qin, Zhaohui S.

Publication type:

Article

Structure and regulatory role of the C-terminal winged helix domain of the archaeal minichromosome maintenance complex.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2558, doi. 10.1093/nar/gkv120

By:

Wiedemann, Christoph;
Szambowska, Anna;
Häfner, Sabine;
Ohlenschläger, Oliver;
Gührs, Karl-Heinz;
Görlach, Matthias

Publication type:

Article

Multiple facets of histone variant H2AX: a DNA double-strand-break marker with several biological functions.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2489, doi. 10.1093/nar/gkv061

By:

Turinetto, Valentina;
Giachino, Claudia

Publication type:

Article

Inhibition of HCV translation by disrupting the structure and interactions of the viral CRE and 3' X-tail.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2914, doi. 10.1093/nar/gkv142

By:

Tuplin, Andrew;
Struthers, Madeleine;
Cook, Jonathan;
Bentley, Kirsten;
Evans, David J.

Publication type:

Article

Structural basis for recognition of G-1-containing tRNA by histidyl-tRNA synthetase.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2980, doi. 10.1093/nar/gkv129

By:

Qingnan Tian;
Caiyan Wang;
Yuhuan Liu;
Wei Xie

Publication type:

Article

Computational and molecular tools for scalable rAAV-mediated genome editing.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 1, doi. 10.1093/nar/gku1286

By:

Stoimenov, Ivaylo;
Muhammad Akhtar Ali;
Pandzic, Tatjana;
Sjöblom, Tobias

Publication type:

Article

2-Thiouracil deprived of thiocarbonyl function preferentially base pairs with guanine rather than adenine in RNA and DNA duplexes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2499, doi. 10.1093/nar/gkv109

By:

Sochacka, Elzbieta;
Szczepanowski, Roman H.;
Cypryk, Marek;
Sobczak, Milena;
Janicka, Magdalena;
Kraszewska, Karina;
Bartos, Paulina;
Chwialkowska, Anna;
Nawrot, Barbara

Publication type:

Article

A novel endonuclease that may be responsible for damaged DNA base repair in Pyrococcus furiosus.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2853, doi. 10.1093/nar/gkv121

By:

Miyako Shiraishi;
Sonoko Ishino;
Takeshi Yamagami;
Yuriko Egashira;
Shinichi Kiyonari;
Yoshizumi Ishino

Publication type:

Article

The RNA helicase DDX6 regulates cell-fate specification in neural stem cells via miRNAs.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2638, doi. 10.1093/nar/gkv138

By:

Nicklas, Sarah;
Okawa, Satoshi;
Hillje, Anna-Lena;
Gonzalez-Cano, Laura;
del Sol, Antonio;
Schwamborn, Jens C.

Publication type:

Article

EvoTol: a protein-sequence based evolutionary intolerance framework for disease-gene prioritization.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 1, doi. 10.1093/nar/gku1322

By:

Rackham, Owen J. L.;
Shihab, Hashem A.;
Johnson, Michael R.;
Petretto, Enrico

Publication type:

Article

TEFM is a potent stimulator of mitochondrial transcription elongation in vitro.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2615, doi. 10.1093/nar/gkv105

By:

Posse, Viktor;
Shahzad, Saba;
Falkenberg, Maria;
Hällberg, B. Martin;
Gustafsson, Claes M.

Publication type:

Article

Unraveling the mechanistic features of RNA polymerase II termination by the 5'-3' exoribonuclease Rat1.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2625, doi. 10.1093/nar/gkv133

By:

Jieun Park;
Myungjin Kang;
Minkyu Kim

Publication type:

Article

Assessing the prevalence of mycoplasma contamination in cell culture via a survey of NCBI's RNA-seq archive.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2535, doi. 10.1093/nar/gkv136

By:

Olarerin-George, Anthony O.;
Hogenesch, John B.

Publication type:

Article

H3K4me3 demethylation by the histone demethylase KDM5C/JARID1C promotes DNA replication origin firing.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2560, doi. 10.1093/nar/gkv090

By:

Rondinelli, Beatrice;
Schwerer, Hél ène;
Antonini, Elena;
Gaviraghi, Marco;
Lupi, Alessio;
Frenquelli, Michela;
Cittaro, Davide;
Segalla, Simona;
Lemaitre, Jean-Marc;
Tonon, Giovanni

Publication type:

Article

In plants, decapping prevents RDR6-dependent production of small interfering RNAs from endogenous mRNAs.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2902, doi. 10.1093/nar/gkv119

By:

de Alba, Angel Emilio Martınez;
Moreno, Ana Beatriz;
Gabriel, Marc;
Mallory, Allison C.;
Christ, Aurélie;
Bounon, Rémi;
Balzergue, Sandrine;
Aubourg, Sebastien;
Gautheret, Daniel;
Crespi, Martin D.;
Vaucheret, Hervée;
Maizel, Alexis

Publication type:

Article

RNA polymerase-induced remodelling of NusA produces a pause enhancement complex.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2829, doi. 10.1093/nar/gkv108

By:

Cong Ma;
Mobli, Mehdi;
Xiao Yang;
Keller, Andrew N.;
King, Glenn F.;
Lewis, Peter J.

Publication type:

Article

Identification and characterization of intracellular proteins that bind oligonucleotides with phosphorothioate linkages.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2927, doi. 10.1093/nar/gkv143

By:

Xue-hai Liang;
Hong Sun;
Wen Shen;
Crooke, Stanley T.

Publication type:

Article

Epigenetic remodeling in B-cell acute lymphoblastic leukemia occurs in two tracks and employs embryonic stem cell-like signatures.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2590, doi. 10.1093/nar/gkv103

By:

Seung-Tae Lee;
Muench, Marcus O.;
Fomin, Marina E.;
Jianqiao Xiao;
Mi Zhou;
de Smith, Adam;
Martín-Subero, José I.;
Heath, Simon;
Houseman, E. Andres;
Roy, Ritu;
Wrensch, Margaret;
Wiencke, John;
Metayer, Catherine;
Wiemels, Joseph L.

Publication type:

Article

Replication fork integrity and intra-S phase checkpoint suppress gene amplification.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2678, doi. 10.1093/nar/gkv084

By:

Kondratova, Anna;
Watanabe, Takaaki;
Marotta, Michael;
Cannon, Matthew;
M. Segall, Anca;
Serre, David;
Tanaka, Hisashi

Publication type:

Article

bHLH proteins involved in Drosophila neurogenesis are mutually regulated at the level of stability.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2543, doi. 10.1093/nar/gkv083

By:

Kiparaki, Marianthi;
Zarifi, Ioanna;
Delidakis, Christos

Publication type:

Article

Human Rap1 modulates TRF2 attraction to telomeric DNA.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2691, doi. 10.1093/nar/gkv097

By:

Janoušková, Eli ška;
Nečasová, Ivona;
Pavloušková, Jana;
Zimmermann, Michal;
Hluchý, Milan;
Marini, Victoria;
Nováková, Monika;
Hofr, Ctirad

Publication type:

Article

SwiftLib: rapid degenerate-codon-library optimization through dynamic programming.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 1, doi. 10.1093/nar/gku1323

By:

Jacobs, Timothy M.;
Yumerefendi, Hayretin;
Kuhlman, Brian;
Leaver-Fay, Andrew

Publication type:

Article

Alu RNA regulates the cellular pool of active ribosomes by targeted delivery of SRP9/14 to 40S subunits.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2874, doi. 10.1093/nar/gkv048

By:

Ivanova, Elena;
Berger, Audrey;
Scherrer, Anne;
Alkalaeva, Elena;
Strub, Katharina

Publication type:

Article

Dissecting the role of the ϕ29 terminal protein DNA binding residues in viral DNA replication.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2790, doi. 10.1093/nar/gkv127

By:

Holguera, Isabel;
Muñoz-Espín, Daniel;
Salas, Margarita

Publication type:

Article

Mycobacterial RNA isolation optimized for non-coding RNA: high fidelity isolation of 5S rRNA from Mycobacterium bovis BCG reveals novel post-transcriptional processing and a complete spectrum of modified ribonucleosides.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 1, doi. 10.1093/nar/gku1317

By:

Fabian Hia;
Yok Hian Chionh;
Yan Ling Joy Pang;
DeMott, Michael S.;
McBee, Megan E.;
Dedon, Peter C.

Publication type:

Article

Dynamic Escherichia coli SeqA complexes organize the newly replicated DNA at a considerable distance from the replisome.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2730, doi. 10.1093/nar/gkv146

By:

Helgesen, Emily;
Fossum-Raunehaug, Solveig;
Sætre, Frank;
Schink, Kay Oliver;
Skarstad, Kirsten

Publication type:

Article

Roles of Rad51 paralogs for promoting homologous recombination in Leishmania infantum.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2701, doi. 10.1093/nar/gkv118

By:

Genois, Marie-Michelle;
Plourde, Marie;
Éthier, Chantal;
Roy, Gaétan;
Poirier, Guy G.;
Ouellette, Marc;
Masson, Jean-Yves

Publication type:

Article

Sequence-specific cleavage of dsRNA by Mini-III RNase.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2864, doi. 10.1093/nar/gkv009

By:

Głów, Dawid;
Pianka, Dariusz;
Sulej, Agata A.;
Kozłowski, Łukasz P.;
Czarnecka, Justyna;
Chojnowski, Grzegorz;
Skowronek, Krzysztof J.;
Bujnicki, Janusz M.

Publication type:

Article

Restriction-modification system with methyl-inhibited base excision and abasic-site cleavage activities.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2841, doi. 10.1093/nar/gkv116

By:

Masaki Fukuyo;
Toshiaki Nakano;
Yingbiao Zhang;
Yoshikazu Furuta;
Ken Ishikawa;
Miki Watanabe-Matsui;
Hirokazu Yano;
Takeshi Hamakawa;
Hiroshi Ide;
Ichizo Kobayashi

Publication type:

Article

Accurate multiplexing and filtering for high-throughput amplicon-sequencing.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2513, doi. 10.1093/nar/gkv107

By:

Esling, Philippe;
Lejzerowicz, Franck;
Pawlowski, Jan

Publication type:

Article

Ovarian carcinoma CDK12 mutations misregulate expression of DNA repair genes via deficient formation and function of the Cdk12/CycK complex.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2575, doi. 10.1093/nar/gkv101

By:

Ekumi, Kingsley M.;
Paculova, Hana;
Lenasi, Tina;
Pospichalova, Vendula;
Bösken, Christian A.;
Rybarikova, Jana;
Bryja, Vitezslav;
Geyer, Matthias;
Blazek, Dalibor;
Barboric, Matjaz

Publication type:

Article

Identification of a second GTP-bound magnesium ion in archaeal initiation factor 2.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2946, doi. 10.1093/nar/gkv053

By:

Dubiez, Etienne;
Aleksandrov, Alexey;
Lazennec-Schurdevin, Christine;
Mechulam, Yves;
Schmitt, Emmanuelle

Publication type:

Article

PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 1, doi. 10.1093/nar/gku1283

By:

Crappé, Jeroen;
Ndah, Elvis;
Koch, Alexander;
Steyaert, Sandra;
Gawron, Daria;
De Keulenaer, Sarah;
De Meester, Ellen;
DeMeyer, Tim;
Van Criekinge, Wim;
Van Damme, Petra;
Menschaert, Gerben

Publication type:

Article

Concerted and differential actions of two enzymatic domains underlie Rad5 contributions to DNA damage tolerance.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2666, doi. 10.1093/nar/gkv004

By:

Koyi Choi;
Batke, Sabrina;
Szakal, Barnabas;
Lowther, Jonathan;
Fanfan Hao;
Sarangi, Prabha;
Branzei, Dana;
Ulrich, Helle D.;
Xiaolan Zhao

Publication type:

Article

CHK1-driven histone H3.3 serine 31 phosphorylation is important for chromatin maintenance and cell survival in human ALT cancer cells.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2603, doi. 10.1093/nar/gkv104

By:

Chang, Fiona T. M.;
Chan, F. Lyn;
McGhie, James D. R.;
Udugama, Maheshi;
Mayne, Lynne;
Collas, Philippe;
Mann, Jeffrey R.;
Lee H. Wong

Publication type:

Article

DNA repair and recovery of RNA synthesis following exposure to ultraviolet light are delayed in long genes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2744, doi. 10.1093/nar/gkv148

By:

Andrade-Lima, Leonardo C.;
Veloso, Artur;
Paulsen, Michelle T.;
Menck, Carlos F. M.;
Ljungman, Mats

Publication type:

Article

High-throughput data integration of RNA-miRNA-circRNA reveals novel insights into mechanisms of benzo[a]pyrene-induced carcinogenicity.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2525, doi. 10.1093/nar/gkv115

By:

Caiment, Florian;
Gaj, Stan;
Claessen, Sandra;
Kleinjans, Jos

Publication type:

Article

Lesion search and recognition by thymine DNA glycosylase revealed by single molecule imaging.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2716, doi. 10.1093/nar/gkv139

By:

Buechner, Claudia N.;
Maiti, Atanu;
Drohat, Alexander C.;
Tessmer, Ingrid

Publication type:

Article

The beta hairpin structure within ribosomal protein S5 mediates interplay between domains II and IV and regulates HCV IRES function.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2888, doi. 10.1093/nar/gkv110

By:

Bhat, Prasanna;
Shwetha, Shivaprasad;
Khandige Sharma, Divya;
Joseph, Agnel Praveen;
Srinivasan, Narayanaswamy;
Das, Saumitra

Publication type:

Article

Functional mapping of the plant small RNA methyltransferase: HEN1 physically interacts with HYL1 and DICER-LIKE 1 proteins.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2802, doi. 10.1093/nar/gkv102

By:

Baranauskė, Simona;
Mickutė, Milda;
Plotnikova, Alexandra;
Finke, Andreas;
Venclovas, česlovas;
KlimaŠauskas, Saulius;
Vilkaitis, Giedrius

Publication type:

Article

Single molecule analysis of Trypanosoma brucei DNA replication dynamics.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2655, doi. 10.1093/nar/gku1389

By:

Calderano, Simone Guedes;
Drosopoulos, William C.;
Quaresma, Marina Mônaco;
Marques, Catarina A.;
Kosiyatrakul, Settapong;
McCulloch, Richard;
Schildkraut, Carl L.;
Elias, Maria Carolina

Publication type:

Article

Development of synthetic selfish elements based on modular nucleases in Drosophila melanogaster.

Published in:: Nucleic Acids Research, 2015, v. 43, n. 5, p. 2991, doi. 10.1093/nar/gkv117
Publication type:: Article

EWS-FLI1 employs an E2F switch to drive target gene expression.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2780, doi. 10.1093/nar/gkv123

By:

Schwentner, Raphaela;
Papamarkou, Theodore;
Kauer, Maximilian O.;
Stathopoulos, Vassilios;
Yang, Fan;
Bilke, Sven;
Meltzer, Paul S.;
Girolami, Mark;
Kovar, Heinrich

Publication type:

Article