Works matching IS 03051048 AND DT 2015 AND VI 43 AND IP 4

Results: 48

Degradation of DNA damage-independently stalled RNA polymerase II is independent of the E3 ligase Elc1.

Published in:: Nucleic Acids Research, 2015, v. 43, n. 4, p. 2486, doi. 10.1093/nar/gkv099
Publication type:: Article

Structural role of the flanking DNA in mariner transposon excision.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2424, doi. 10.1093/nar/gkv096

By:

Dornan, Jacqueline;
Grey, Heather;
Richardson, Julia M.

Publication type:

Article

Defining the sequence requirements for the positioning of base J in DNA using SMRT sequencing.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2102, doi. 10.1093/nar/gkv095

By:

Genest, Paul-Andre;
Baugh, Loren;
Taipale, Alex;
Wanqi Zhao;
Jan, Sabrina;
van Luenen, Henri G. A. M.;
Korlach, Jonas;
Clark, Tyson;
Khai Luong;
Boitano, Matthew;
Turner, Steve;
Myler, Peter J.;
Borst, Piet

Publication type:

Article

Mechanism of foreign DNA recognition by a CRISPR RNA-guided surveillance complex from Pseudomonas aeruginosa.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2216, doi. 10.1093/nar/gkv094

By:

Rollins, MaryClare F.;
Schuman, Jason T.;
Paulus, Kirra;
Bukhari, Habib S. T.;
Wiedenheft, Blake

Publication type:

Article

Autonomous actions of the human growth hormone long-range enhancer.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2091, doi. 10.1093/nar/gkv093

By:

Eung Jae Yoo;
Brown, Christopher D.;
Yu-Cheng Tsai;
Cooke, Nancy E.;
Liebhaber, Stephen A.

Publication type:

Article

Combinatorial recognition of a complex telomere repeat sequence by the Candida parapsilosis Cdc13AB heterodimer.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2164, doi. 10.1093/nar/gkv092

By:

Steinberg-Neifach, Olga;
Wellington, Kemar;
Vazquez, Leslie;
Lue, Neal F.

Publication type:

Article

Visualization and quantitative analysis of extrachromosomal telomere-repeat DNA in individual human cells by Halo-FISH.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2152, doi. 10.1093/nar/gkv091

By:

Komosa, Martin;
Root, Heather;
Meyn, M. Stephen

Publication type:

Article

HP1BP3 is a novel histone H1 related protein with essential roles in viability and growth.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2074, doi. 10.1093/nar/gkv089

By:

Garfinkel, Benjamin P.;
Melamed-Book, Naomi;
Anuka, Eli;
Bustin, Michael;
Orly, Joseph

Publication type:

Article

MicroRNA-26a induced by hypoxia targets HDAC6 in myogenic differentiation of embryonic stem cells.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2057, doi. 10.1093/nar/gkv088

By:

Sae-Won Lee;
Jimin Yang;
Su-Yeon Kim;
Han-Kyul Jeong;
Jaewon Lee;
Woo Jean Kim;
Eun Ju Lee;
Hyo-Soo Kim

Publication type:

Article

FUBP1: a new protagonist in splicing regulation of the DMD gene.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2378, doi. 10.1093/nar/gkv086

By:

Miro, Julie;
Laaref, Abdelhamid Mahdi;
Rofidal, Valérie;
Lagrafeuille, Rosyne;
Hem, Sonia;
Thorel, Delphine;
Méchin, Deborah;
Mamchaoui, Kamel;
Mouly, Vincent;
Claustres, Mireille;
Tuffery-Giraud, Sylvie

Publication type:

Article

Direct observation of the translocation mechanism of transcription termination factor Rho.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2367, doi. 10.1093/nar/gkv085

By:

Gocheva, Veronika;
Le Gall, Antoine;
Boudvillain, Marc;
Margeat, Emmanuel;
Nollmann, Marcelo

Publication type:

Article

Fungal Ku prevents permanent cell cycle arrest by suppressing DNA damage signaling at telomeres.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2138, doi. 10.1093/nar/gkv082

By:

de Sena-Tomás, Carmen;
Eun Young Yu;
Calzada, Arturo;
Holloman, William K.;
Lue, Neal F.;
Pérez-Martín, José

Publication type:

Article

Nucleotide excision repair efficiency in quiescent human fibroblasts is modulated by circadian clock.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2126, doi. 10.1093/nar/gkv081

By:

Bee, Leonardo;
Marini, Selena;
Pontarin, Giovanna;
Ferraro, Paola;
Costa, Rodolfo;
Albrecht, Urs;
Celotti, Lucia

Publication type:

Article

Analyzing ion distributions around DNA: sequence-dependence of potassium ion distributions from microsecond molecular dynamics.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2412, doi. 10.1093/nar/gkv080

By:

Pasi, Marco;
Maddocks, John H.;
Lavery, Richard

Publication type:

Article

Complementation of aprataxin deficiency by base excision repair enzymes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2271, doi. 10.1093/nar/gkv079

By:

Çağlayan, Melike;
Horton, Julie K.;
Prasad, Rajendra;
Wilson, Samuel H.

Publication type:

Article

Effects of HIV-1 reverse transcriptase connection subdomain mutations on polypurine tract removal and initiation of (+)-strand DNA synthesis.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2259, doi. 10.1093/nar/gkv077

By:

Betancor, Gilberto;
Álvarez, Mar;
Marcelli, Barbara;
Andrés, Cristina;
Martínez, Miguel A.;
Menéndez-Arias, Luis

Publication type:

Article

FF<sub>483-484</sub> motif of human Polη mediates its interaction with the POLD2 subunit of Polδ and contributes to DNA damage tolerance.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2116, doi. 10.1093/nar/gkv076

By:

Baldeck, Nadège;
Janel-Bintz, Régine;
Wagner, Jérome;
Tissier, Agnès;
Fuchs, Robert P.;
Burkovics, Peter;
Haracska, Lajos;
Despras, Emmanuelle;
Bichara, Marc;
Chatton, Bruno;
Cordonnier, Agnès M.

Publication type:

Article

Yeast Kre33 and human NAT10 are conserved 18S rRNA cytosine acetyltransferases that modify tRNAs assisted by the adaptor Tan1/THUMPD1.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2242, doi. 10.1093/nar/gkv075

By:

Sharma, Sunny;
Langhendries, Jean-Louis;
Watzinger, Peter;
Kötter, Peter;
Entian, Karl-Dieter;
Lafontaine, Denis L. J.

Publication type:

Article

Identifying core gene modules in glioblastoma based on multilayer factor-mediated dysfunctional regulatory networks through integrating multi-dimensional genomic data.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 1997, doi. 10.1093/nar/gkv074

By:

Yanyan Ping;
Yulan Deng;
Li Wang;
Hongyi Zhang;
Yong Zhang;
Chaohan Xu;
Hongying Zhao;
Huihui Fan;
Fulong Yu;
Yun Xiao;
Xia Li

Publication type:

Article

Structural insights into the recognition of the internal A-rich linker from OxyS sRNA by Escherichia coli Hfq.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2400, doi. 10.1093/nar/gkv072

By:

Lijun Wang;
Weiwei Wang;
Fudong Li;
Jiahai Zhang;
Jihui Wu;
Qingguo Gong;
Yunyu Shi

Publication type:

Article

Transfer activation of SXT/R391 integrative and conjugative elements: unraveling the SetCD regulon.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2045, doi. 10.1093/nar/gkv071

By:

Poulin-Laprade, Dominic;
Matteau, Dominick;
Jacques, Pierre- Étienne;
Rodrigue, Sébastien;
Burrus, Vincent

Publication type:

Article

Luzp4 defines a new mRNA export pathway in cancer cells.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2353, doi. 10.1093/nar/gkv070

By:

Viphakone, Nicolas;
Cumberbatch, Marcus G.;
Livingstone, Michaela J.;
Heath, Paul R.;
Dickman, Mark J.;
Catto, James W.;
Wilson, Stuart A.

Publication type:

Article

Structural and functional characterization of a cell cycle associated HDAC1/2 complex reveals the structural basis for complex assembly and nucleosome targeting.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2033, doi. 10.1093/nar/gkv068

By:

Itoh, Toshimasa;
Fairall, Louise;
Muskett, Frederick W.;
Milano, Charles P.;
Watson, Peter J.;
Arnaudo, Nadia;
Saleh, Almutasem;
Millard, Christopher J.;
El-Mezgueldi, Mohammed;
Martino, Fabrizio;
Schwabe, John W. R.

Publication type:

Article

Telomeric repeat-containing RNA/G-quadruplex-forming sequences cause genome-wide alteration of gene expression in human cancer cells in vivo.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2022, doi. 10.1093/nar/gkv063

By:

Kyotaro Hirashima;
Hiroyuki Seimiya

Publication type:

Article

High-throughput screening identifies small molecules that enhance the pharmacological effects of oligonucleotides.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 1987, doi. 10.1093/nar/gkv060

By:

Yang, B.;
Ming, X.;
Cao, C.;
Laing, B.;
Yuan, A.;
Porter, M. A.;
Hull-Ryde, E. A.;
Maddry, J.;
Suto, M.;
Janzen, W. P.;
Juliano, R. L.

Publication type:

Article

Impact of template backbone heterogeneity on RNA polymerase II transcription.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2232, doi. 10.1093/nar/gkv059

By:

Liang Xu;
Wei Wang;
Lu Zhang;
Jenny Chong;
Xuhui Huang;
Dong Wang

Publication type:

Article

Identification of a new ribose methylation in the 18S rRNA of S. cerevisiae.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2342, doi. 10.1093/nar/gkv058

By:

Jun Yang;
Sharma, Sunny;
Kötter, Peter;
Entian, Karl-Dieter

Publication type:

Article

Characterization of the mammalian miRNA turnover landscape.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2326, doi. 10.1093/nar/gkv057

By:

Yanwen Guo;
Jun Liu;
Elfenbein, Sarah J.;
Yinghong Ma;
Mei Zhong;
Caihong Qiu;
Ye Ding;
Jun Lu

Publication type:

Article

Effects of physiological self-crowding of DNA on shape and biological properties of DNA molecules with various levels of supercoiling.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2390, doi. 10.1093/nar/gkv055

By:

Benedetti, Fabrizio;
Japaridze, Aleksandre;
Dorier, Julien;
Racko, Dusan;
Kwapich, Robert;
Burnier, Yannis;
Dietler, Giovanni;
Stasiak, Andrzej

Publication type:

Article

Stable heteroplasmy at the single-cell level is facilitated by intercellular exchange of mtDNA.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2177, doi. 10.1093/nar/gkv052

By:

Jayaprakash, Anitha D.;
Benson, Erica K.;
Gone, Swapna;
Liang, Raymond;
Shim, Jaehee;
Lambertini, Luca;
Toloue, Masoud M.;
Wigler, Mike;
Aaronson, Stuart A.;
Sachidanandam, Ravi

Publication type:

Article

Insights into the mechanism of a G-quadruplex-unwinding DEAH-box helicase.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2223, doi. 10.1093/nar/gkv051

By:

Chen, Michael C.;
Murat, Pierre;
Abecassis, Keren;
Ferré-D'Amaré, Adrian R.;
Balasubramanian, Shankar

Publication type:

Article

Regulation of mammalian nucleotide metabolism and biosynthesis.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2466, doi. 10.1093/nar/gkv047

By:

Lane, Andrew N.;
Fan, Teresa W.-M.

Publication type:

Article

Spatial re-organization of myogenic regulatory sequences temporally controls gene expression.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2008, doi. 10.1093/nar/gkv046

By:

Akihito Harada;
Mallappa, Chandrashekara;
Seiji Okada;
Butler, John T.;
Baker, Stephen P.;
Lawrence, Jeanne B.;
Yasuyuki Ohkawa;
Imbalzano, Anthony N.

Publication type:

Article

RNA circularization strategies in vivo and in vitro.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2454, doi. 10.1093/nar/gkv045

By:

Petkovic, Sonja;
Müller, Sabine

Publication type:

Article

Corrigendum.

Published in:: Nucleic Acids Research, 2015, v. 43, n. 4, p. 2487, doi. 10.1093/nar/gkv041
Publication type:: Article

The Mediator complex of Caenorhabditis elegans: insights into the developmental and physiological roles of a conserved transcriptional coregulator.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2442, doi. 10.1093/nar/gkv037

By:

Grants, Jennifer M.;
Goh, Grace Y. S.;
Taubert, Stefan

Publication type:

Article

Viroid RNA turnover: characterization of the subgenomic RNAs of potato spindle tuber viroid accumulating in infected tissues provides insights into decay pathways operating in vivo.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2313, doi. 10.1093/nar/gkv034

By:

Minoia, Sofia;
Navarro, Beatriz;
Delgado, Sonia;
Di Serio, Francesco;
Flores, Ricardo

Publication type:

Article

Molecular mechanisms in DM1 -- a focus on foci.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2433, doi. 10.1093/nar/gkv029

By:

Pettersson, Olof Joakim;
Aagaard, Lars;
Jensen, Thomas Gryesten;
Damgaard, Christian Kroun

Publication type:

Article

Conformational changes in the P site and mRNA entry channel evoked by AUG recognition in yeast translation preinitiation complexes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2293, doi. 10.1093/nar/gkv028

By:

Fan Zhang;
Saini, Adesh K.;
Byung-Sik Shin;
Nanda, Jagpreet;
Hinnebusch, Alan G.

Publication type:

Article

DNA recognition by Escherichia coli CbpA protein requires a conserved arginine -- minor-groove interaction.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2282, doi. 10.1093/nar/gkv012

By:

Chintakayala, Kiran;
Sellars, Laura E.;
Singh, Shivani S.;
Shahapure, Rajesh;
Westerlaken, Ilja;
Meyer, Anne S.;
Dame, Remus T.;
Grainger, David C.

Publication type:

Article

Genome-wide analyses of LINE-LINE-mediated nonallelic homologous recombination.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2188, doi. 10.1093/nar/gku1394

By:

Startek, Michał;
Szafranski, Przemyslaw;
Gambin, Tomasz;
Campbell, Ian M.;
Hixson, Patricia;
Shaw, Chad A.;
Stankiewicz, Paweł;
Gambin, Anna

Publication type:

Article

Genome-wide features of neuroendocrine regulation in Drosophila by the basic helix-loop-helix transcription factor DIMMED.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 2199, doi. 10.1093/nar/gku1377

By:

Hadžić, Tarik;
Dongkook Park;
Abruzzi, Katharine C.;
Lin Yang;
Trigg, Jennifer S.;
Rohs, Remo;
Rosbash, Michael;
Taghert, Paul H.

Publication type:

Article

Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory landscape.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 1, doi. 10.1093/nar/gku1280

By:

Griffon, Aurélien;
Barbier, Quentin;
Dalino, Jordi;
van Helden, Jacques;
Spicuglia, Salvatore;
Ballester, Benoit

Publication type:

Article

Stress granules are dispensable for mRNA stabilization during cellular stress.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 1, doi. 10.1093/nar/gku1275

By:

Bley, Nadine;
Lederer, Marcell;
Pfalz, Birgit;
Reinke, Claudia;
Fuchs, Tommy;
Glaß, Markus;
Möller, Birgit;
Hüttelmaier, Stefan

Publication type:

Article

Systematic integration of RNA-Seq statistical algorithms for accurate detection of differential gene expression patterns.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 1, doi. 10.1093/nar/gku1273

By:

Moulos, Panagiotis;
Hatzis, Pantelis

Publication type:

Article

Electrophoretic mobility of supercoiled, catenated and knotted DNA molecules.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 1, doi. 10.1093/nar/gku1255

By:

Cebrián, Jorge;
Kadomatsu-Hermosa, Maridian J.;
Castán, Alicia;
Martínez, Víctor;
Parra, Cristina;
Fernández-Nestosa, María José;
Schaerer, Christian;
Martínez-Robles, María-Luisa;
Hernández, Pablo;
Krimer, Dora B.;
Stasiak, Andrzej;
Schvartzman, Jorge B.

Publication type:

Article

Allele-specific copy number profiling by next-generation DNA sequencing.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 1, doi. 10.1093/nar/gku1252

By:

Hao Chen;
Bell, John M.;
Zavala, Nicolas A.;
Ji, Hanlee P.;
Zhang, Nancy R.

Publication type:

Article

T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 4, p. 1, doi. 10.1093/nar/gku1250

By:

Fiston-Lavier, Anna-Sophie;
Barrón, Maite G.;
Petrov, Dmitri A.;
González, Josefa

Publication type:

Article