Works matching IS 03051048 AND DT 2015 AND VI 43 AND IP 22

Results: 48

Structural basis for suppression of hypernegative DNA supercoiling by E. coli topoisomerase I.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 11031, doi. 10.1093/nar/gkv1073

By:

Kemin Tan;
Qingxuan Zhou;
Bokun Cheng;
Zhongtao Zhang;
Andrzej Joachimiak;
Yuk-Ching Tse-Dinh

Publication type:

Article

The structure of Erb1-Ytm1 complex reveals the functional importance of a high-affinity binding between two β-propellers during the assembly of large ribosomal subunits in eukaryotes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 11017, doi. 10.1093/nar/gkv1043

By:

Wegrecki, Marcin;
Rodríguez-Galán, Olga;
de la Cruz, Jesús;
Bravo, Jeronimo

Publication type:

Article

Erratum: SplicePie: a novel analytical approach for the detection of alternative, non-sequential and recursive splicing.

Published in:: Nucleic Acids Research, 2015, v. 43, n. 22, p. 11068, doi. 10.1093/nar/gkv1062
Publication type:: Article

Probing the active site tryptophan of Staphylococcus aureus thioredoxin with an analog.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 11061, doi. 10.1093/nar/gkv1255

By:

Englert, Markus;
Akiyoshi Nakamura;
Yane-Shih Wang;
Eiler, Daniel;
Söll, Dieter;
Li-Tao Guo

Publication type:

Article

The structures of the SNM1A and SNM1B/Apollo nuclease domains reveal a potential basis for their distinct DNA processing activities.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 11047, doi. 10.1093/nar/gkv1256

By:

Allerston, Charles K.;
Lee, Sook Y.;
Newman, Joseph A.;
Schofield, Christopher J.;
McHugh, Peter J.;
Gileadi, Opher

Publication type:

Article

Two distinct modes of metal ion binding in the nuclease active site of a viral DNA-packaging terminase: insight into the two-metal-ion catalytic mechanism.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 11003, doi. 10.1093/nar/gkv1018

By:

Haiyan Zhao;
Zihan Lin;
Lynn, Anna Y.;
Varnado, Brittany;
Beutler, John A.;
Murelli, Ryan P.;
Le Grice, Stuart F. J.;
Liang Tang

Publication type:

Article

Insights into molecular plasticity in protein complexes from Trm9-Trm112 tRNA modifying enzyme crystal structure.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10989, doi. 10.1093/nar/gkv1009

By:

Létoquart, Juliette;
van Tran, Nhan;
Caroline, Vonny;
Aleksandrov, Alexey;
Lazar, Noureddine;
van Tilbeurgh, Herman;
Liger, Dominique;
Graille, Marc

Publication type:

Article

SKI2 mediates degradation of RISC 5'-cleavage fragments and prevents secondary siRNA production from miRNA targets in Arabidopsis.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10975, doi. 10.1093/nar/gkv1014

By:

Branscheid, Anja;
Marchais, Antonin;
Schott, Gregory;
Lange, Heike;
Gagliardi, Dominique;
Andersen, Stig Uggerhøj;
Voinnet, Olivier;
Brodersen, Peter

Publication type:

Article

Assembly and dynamics of the U4/U6 di-snRNP by single-molecule FRET.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10963, doi. 10.1093/nar/gkv1011

By:

Hardin, John W.;
Warnasooriya, Chandani;
Yasushi Kondo;
Kiyoshi Nagai;
Rueda, David

Publication type:

Article

Dynamic modulation of Dnmt2-dependent tRNA methylation by the micronutrient queuine.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10952, doi. 10.1093/nar/gkv980

By:

Müller, Martin;
Hartmann, Mark;
Schuster, Isabelle;
Bender, Sebastian;
Thüring, Kathrin L.;
Helm, Mark;
Katze, Jon R.;
Nellen, Wolfgang;
Lyko, Frank;
Ehrenhofer-Murray, Ann E.

Publication type:

Article

Nucleotide sequence of miRNA precursor contributes to cleavage site selection by Dicer.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10939, doi. 10.1093/nar/gkv968

By:

Starega-Roslan, Julia;
Galka-Marciniak, Paulina;
Krzyzosiak, Wlodzimierz J.

Publication type:

Article

PARN deadenylase is involved in miRNA-dependent degradation of TP53 mRNA in mammalian cells.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10925, doi. 10.1093/nar/gkv959

By:

Xiaokan Zhang;
Devany, Emral;
Murphy, Michael R.;
Glazman, Galina;
Persaud, Mirjana;
Kleiman, Frida E.

Publication type:

Article

Binding dynamics of a monomeric SSB protein to DNA: a single-molecule multi-process approach.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10907, doi. 10.1093/nar/gkv1225

By:

Morten, Michael J.;
Peregrina, Jose R.;
Figueira-Gonzalez, Maria;
Ackermann, Katrin;
Bode, Bela E.;
White, Malcolm F.;
Penedo, J. Carlos

Publication type:

Article

Structural basis for RNA-genome recognition during bacteriophage Qβ replication.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10893, doi. 10.1093/nar/gkv1212

By:

Gytz, Heidi;
Mohr, Durita;
Seweryn, Paulina;
Yuichi Yoshimura;
Kutlubaeva, Zarina;
Dolman, Fleur;
Chelchessa, Bosene;
Chetverin, Alexander B.;
Mulder, Frans A. A.;
Brodersen, Ditlev E.;
Knudsen, Charlotte R.

Publication type:

Article

GEN1 promotes Holliday junction resolution by a coordinated nick and counter-nick mechanism.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10882, doi. 10.1093/nar/gkv1207

By:

Ying Wai Chan;
West, Stephen

Publication type:

Article

Re-evaluating the kinetics of ATP hydrolysis during initiation of DNA sliding by Type III restriction enzymes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10870, doi. 10.1093/nar/gkv1154

By:

Tóth, Júlia;
Bollins, Jack;
Szczelkun, Mark D.

Publication type:

Article

Allosteric ring assembly and chemo-mechanical melting by the interaction between 5'-phosphate and λ exonuclease.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10861, doi. 10.1093/nar/gkv1150

By:

Jungmin Yoo;
Gwangrog Lee

Publication type:

Article

Foreign DNA acquisition by the I-F CRISPR-Cas system requires all components of the interference machinery.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10848, doi. 10.1093/nar/gkv1261

By:

Vorontsova, Daria;
Datsenko, Kirill A.;
Medvedeva, Sofia;
Bondy-Denomy, Joseph;
Savitskaya, Ekaterina E.;
Pougach, Ksenia;
Logacheva, Maria;
Wiedenheft, Blake;
Davidson, Alan R.;
Severinov, Konstantin;
Semenova, Ekaterina

Publication type:

Article

CRISPR interference and priming varies with individual spacer sequences.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10831, doi. 10.1093/nar/gkv1259

By:

Chaoyou Xue;
Seetharam, Arun S.;
Musharova, Olga;
Severinov, Konstantin;
Brouns, Stan J. J.;
Severin, Andrew J.;
Sashital, Dipali G.

Publication type:

Article

Different genome stability proteins underpin primed and naïve adaptation in E. coli CRISPR-Cas immunity.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10821, doi. 10.1093/nar/gkv1213

By:

Ivančić-Baće, Ivana;
Cass, Simon D.;
Wearne, Stephen J.;
Bolt, Edward L.

Publication type:

Article

The anatomical distribution of genetic associations.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10804, doi. 10.1093/nar/gkv1262

By:

Wells, Alan;
Kopp, Nathan;
Xiaoxiao Xu;
O'Brien, David R.;
Wei Yang;
Nehorai, Arye;
Adair-Kirk, Tracy L.;
Kopan, Raphael;
Dougherty, J. D.

Publication type:

Article

Cytotoxic and mutagenic properties of O<sup>4</sup>-alkylthymidine lesions in Escherichia coli cells.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10795, doi. 10.1093/nar/gkv941

By:

Pengcheng Wang;
Amato, Nicholas J.;
Qianqian Zhai;
Yinsheng Wang

Publication type:

Article

The PIN domain of EXO1 recognizes poly(ADP-ribose) in DNA damage response.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10782, doi. 10.1093/nar/gkv939

By:

Feng Zhang;
Jiazhong Shi;
Shih-Hsun Chen;
Chunjing Bian;
Xiaochun Yu

Publication type:

Article

CITED2 silencing sensitizes cancer cells to cisplatin by inhibiting p53 trans-activation and chromatin relaxation on the ERCC1 DNA repair gene.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10760, doi. 10.1093/nar/gkv934

By:

Yu-Chin Liu;
Pu-Yuan Chang;
Chao, Chuck C.-K.

Publication type:

Article

The sliding clamp tethers the endonuclease domain of MutL to DNA.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10746, doi. 10.1093/nar/gkv918

By:

Pillon, Monica C.;
Babu, Vignesh M. P.;
Randall, Justin R.;
Cai, Jiudou;
Simmons, Lyle A.;
Sutton, Mark D.;
Guarné, Alba

Publication type:

Article

Conformational toggling controls target site choice for the heteromeric transposase element Tn7.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10734, doi. 10.1093/nar/gkv913

By:

Qiaojuan Shi;
Straus, Marco R.;
Caron, Jeremy J.;
Huasheng Wang;
Yu Seon Chung;
Guarné, Alba;
Peters, Joseph E.

Publication type:

Article

Effects of non-CpG site methylation on DNA thermal stability: a fluorescence study.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10722, doi. 10.1093/nar/gkv884

By:

Nardo, Luca;
Lamperti, Marco;
Salerno, Domenico;
Cassina, Valeria;
Missana, Natalia;
Bondani, Maria;
Tempestini, Alessia;
Mantegazza, Francesco

Publication type:

Article

Structure of Naegleria Tet-like dioxygenase (NgTet1) in complexes with a reaction intermediate 5-hydroxymethylcytosine DNA.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10713, doi. 10.1093/nar/gkv870

By:

Hideharu Hashimoto;
Pais, June E.;
Nan Dai;
Corrêa Jr., Ivan R.;
Xing Zhang;
Yu Zheng;
Xiaodong Cheng

Publication type:

Article

Directional transition from initiation to elongation in bacterial translation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10700, doi. 10.1093/nar/gkv869

By:

Goyal, Akanksha;
Belardinelli, Riccardo;
Maracci, Cristina;
Milón, Pohl;
Rodnina, Marina V.

Publication type:

Article

Epigenetic instability of imprinted genes in human cancers.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10689, doi. 10.1093/nar/gkv867

By:

Joomyeong Kim;
Bretz, Corey L.;
Lee, Suman

Publication type:

Article

Profiling of promoter occupancy by the SND1 transcriptional coactivator identifies downstream glycerolipid metabolic genes involved in TNFα response in human hepatoma cells.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10673, doi. 10.1093/nar/gkv858

By:

Arretxe, Enara;
Armengol, Sandra;
Mula, Sarai;
Chico, Yolanda;
Ochoa, Begona;
Martínez, María José

Publication type:

Article

Unique transposon landscapes are pervasive across Drosophila melanogaster genomes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10655, doi. 10.1093/nar/gkv1193

By:

Rahman, Reazur;
Gung-wei Chirn;
Kanodia, Abhay;
Sytnikova, Yuliya A.;
Brembs, Bjürn;
Bergman, Casey M.;
Lau, Nelson C.

Publication type:

Article

Comparative genomic analyses reveal a vast, novel network of nucleotide-centric systems in biological conflicts, immunity and signaling.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10633, doi. 10.1093/nar/gkv1267

By:

Burroughs, A. Maxwell;
Zhang, Dapeng;
Schäffer, Daniel E.;
Iyer, Lakshminarayan M.;
Aravind, L.

Publication type:

Article

RNAi revised - target mRNA-dependent enhancement of gene silencing.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10623, doi. 10.1093/nar/gkv1200

By:

Dornseifer, Simon;
Willkomm, Sarah;
Far, Rosel Kretschmer-Kazemi;
Liebschwager, Janine;
Beltsiou, Foteini;
Frank, Kirsten;
Laufer, Sandra D.;
Martinetz, Thomas;
Sczakiel, Georg;
Claussen, Jens Christian;
Restle, Tobias

Publication type:

Article

Discover hidden splicing variations by mapping personal transcriptomes to personal genomes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10612, doi. 10.1093/nar/gkv1099

By:

Stein, Shayna;
Zhi-xiang Lu;
Bahrami-Samani, Emad;
Park, Juw Won;
Yi Xing

Publication type:

Article

Site-specific replacement of the thymine methyl group by fluorine in thrombin binding aptamer significantly improves structural stability and anticoagulant activity.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10602, doi. 10.1093/nar/gkv1224

By:

Virgilio, Antonella;
Petraccone, Luigi;
Vellecco, Valentina;
Bucci, Mariarosaria;
Varra, Michela;
Irace, Carlo;
Santamaria, Rita;
Pepe, Antonietta;
Mayol, Luciano;
Esposito, Veronica;
Galeone, Aldo

Publication type:

Article

Cross talk of tyrosine kinases with the DNA damage signaling pathways.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10588, doi. 10.1093/nar/gkv1166

By:

Mahajan, Kiran;
Mahajan, Nupam P.

Publication type:

Article

The casposon-encoded Cas1 protein from Aciduliprofundum boonei is a DNA integrase that generates target site duplications.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 10576, doi. 10.1093/nar/gkv1180

By:

Hickman, Alison B.;
Dyda, Fred

Publication type:

Article

Conformation-sensitive nucleoside analogues as topology-specific fluorescence turn-on probes for DNA and RNA G-quadruplexes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 1, doi. 10.1093/nar/gkv743

By:

Tanpure, Arun A.;
Srivatsan, Seergazhi G.

Publication type:

Article

DREAMing: a simple and ultrasensitive method for assessing intratumor epigenetic heterogeneity directly from liquid biopsies.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 1, doi. 10.1093/nar/gkv795

By:

Pisanic II, Thomas R.;
Athamanolap, Pornpat;
Poh, Weijie;
Chen Chen;
Hulbert, Alicia;
Brock, Malcolm V.;
Herman, James G.;
Tza-Huei Wang

Publication type:

Article

DNA-binding protein prediction using plant specific support vector machines: validation and application of a new genome annotation tool.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 1, doi. 10.1093/nar/gkv805

By:

Motion, Graham B.;
Howden, Andrew J. M.;
Huitema, Edgar;
Jones, Susan

Publication type:

Article

A polymerase engineered for bisulfite sequencing.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 1, doi. 10.1093/nar/gkv798

By:

Millar, Doug;
Christova, Yonka;
Holliger, Philipp

Publication type:

Article

Oligonucleotide gap-fill ligation for mutation detection and sequencing in situ.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 1, doi. 10.1093/nar/gkv772

By:

Mignardi, Marco;
Mezger, Anja;
Xiaoyan Qian;
La Fleur, Linnea;
Botling, Johan;
Larsson, Chatarina;
Nilsson, Mats

Publication type:

Article

RiboAbacus: a model trained on polyribosome images predicts ribosome density and translational efficiency from mammalian transcriptomes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 1, doi. 10.1093/nar/gkv781

By:

Lauria, Fabio;
Tebaldi, Toma;
Lunelli, Lorenzo;
Struffi, Paolo;
Gatto, Pamela;
Pugliese, Andrea;
Brigotti, Maurizio;
Montanaro, Lorenzo;
Ciribilli, Yari;
Inga, Alberto;
Quattrone, Alessandro;
Sanguinetti, Guido;
Viero, Gabriella

Publication type:

Article

A novel method for the multiplexed target enrichment of MinION next generation sequencing libraries using PCR-generated baits.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 1, doi. 10.1093/nar/gkv773

By:

Karamitros, Timokratis;
Magiorkinis, Gkikas

Publication type:

Article

Simultaneous measurement of passage through the restriction point and MCM loading in single cells.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 1, doi. 10.1093/nar/gkv744

By:

Håland, T. W.;
Boye, E.;
Stokke, T.;
Grallert, B.;
Syljuåsen, R. G.

Publication type:

Article

Rationally evolving tRNA<sup>Pyl</sup> for efficient incorporation of noncanonical amino acids.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 1, doi. 10.1093/nar/gkv800

By:

Chenguang Fan;
Hai Xiong;
Reynolds, Noah M.;
Söll, Dieter

Publication type:

Article

CRISPR-STAT: an easy and reliable PCR-based method to evaluate target-specific sgRNA activity.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 22, p. 1, doi. 10.1093/nar/gkv802

By:

Carrington, Blake;
Varshney, Gaurav K.;
Burgess, Shawn M.;
Sood, Raman

Publication type:

Article