Works matching IS 03051048 AND DT 2015 AND VI 43 AND IP 20

Results: 46

Extensive RPA2 hyperphosphorylation promotes apoptosis in response to DNA replication stress in CHK1 inhibited cells.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9776, doi. 10.1093/nar/gkv835

By:

Zuazua-Villar, Pedro;
Ganesh, Anil;
Phear, Geraldine;
Gagou, Mary E.;
Meuth, Mark

Publication type:

Article

Quadruplex formation by both G-rich and C-rich DNA strands of the C9orf72(GGGGCC)8•(GGCCCC)8 repeat: effect of CpG methylation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 10055, doi. 10.1093/nar/gkv1008

By:

Zamiri, Bita;
Mirceta, Mila;
Bomsztyk, Karol;
Macgregor Jr., Robert B.;
Pearson, Christopher E.

Publication type:

Article

A new method to prevent carry-over contaminations in two-step PCR NGS library preparations.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 1, doi. 10.1093/nar/gkv694

By:

Seitz, Volkhard;
Schaper, Sigrid;
Dröge, Anja;
Lenze, Dido;
Hummel, Michael;
Hennig, Steffen

Publication type:

Article

Directly lighting up RNA G-quadruplexes from test tubes to living human cells.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9575, doi. 10.1093/nar/gkv1040

By:

Shujuan Xu;
Qian Li;
Junfeng Xiang;
Qianfan Yang;
Hongxia Sun;
Aijiao Guan;
Lixia Wang;
Yan Liu;
Lijia Yu;
Yunhua Shi;
Hongbo Chen;
Yalin Tang

Publication type:

Article

The players may change but the game remains: network analyses of ruminal microbiomes suggest taxonomic differences mask functional similarity.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9600, doi. 10.1093/nar/gkv973

By:

Taxis, Tasia M.;
Wolff, Sara;
Gregg, Sarah J.;
Minton, Nicholas O.;
Chiqian Zhang;
Jingjing Dai;
Schnabel, Robert D.;
Taylor, Jeremy F.;
Kerley, Monty S.;
Pires, J. Chris;
Lamberson, William R.;
Conant, Gavin C.

Publication type:

Article

Hairpins participating in folding of human telomeric sequence quadruplexes studied by standard and T-REMD simulations.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9626, doi. 10.1093/nar/gkv994

By:

Stadlbauer, Petr;
Kührová, Petra;
Banáš, Pavel;
Koča, Jaroslav;
Bussi, Giovanni;
Trantírek, Lukáš;
Otyepka, Michal;
Šponer, Jiří

Publication type:

Article

Mammalian RAD51 paralogs protect nascent DNA at stalled forks and mediate replication restart.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9835, doi. 10.1093/nar/gkv880

By:

Somyajit, Kumar;
Saxena, Sneha;
Babu, Sharath;
Mishra, Anup;
Nagaraju, Ganesh

Publication type:

Article

Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM).

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9645, doi. 10.1093/nar/gkv1012

By:

Skinnider, Michael A.;
Dejong, Chris A.;
Rees, Philip N.;
Johnston, Chad W.;
Haoxin Li;
Webster, Andrew L. H.;
Wyatt, Morgan A.;
Magarvey, Nathan A.

Publication type:

Article

H3K23me2 is a new heterochromatic mark in Caenorhabditis elegans.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9694, doi. 10.1093/nar/gkv1063

By:

Vandamme, Julien;
Sidoli, Simone;
Mariani, Luca;
Friis, Carsten;
Christensen, Jesper;
Helin, Kristian;
Jensen, Ole N.;
Salcini, Anna Elisabetta

Publication type:

Article

Trans-oligomerization of duplicated aminoacyl-tRNA synthetases maintains genetic code fidelity under stress.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9905, doi. 10.1093/nar/gkv1020

By:

Rubio, Miguel Ángel;
Napolitano, Mauro;
Ochoa de Alda, Jesús A. G.;
Santamaría-Gómez, Javier;
Patterson, Carl J.;
Foster, Andrew W.;
Bru-Martínez, Roque;
Robinson, Nigel J.;
Luque, Ignacio

Publication type:

Article

A nested parallel experiment demonstrates differences in intensity-dependence between RNA-seq and microarrays.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 1, doi. 10.1093/nar/gkv636

By:

Robinson, David G.;
Wang, Jean Y.;
Storey, John D.

Publication type:

Article

FUS/TLS contributes to replication-dependent histone gene expression by interaction with U7 snRNPs and histone-specific transcription factors.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9711, doi. 10.1093/nar/gkv794

By:

Raczynska, Katarzyna Dorota;
Ruepp, Marc-David;
Brzek, Aleksandra;
Reber, Stefan;
Romeo, Valentina;
Rindlisbacher, Barbara;
Heller, Manfred;
Szweykowska-Kulinska, Zofia;
Jarmolowski, Artur;
Schümperli, Daniel

Publication type:

Article

KSHV but not MHV-68 LANA induces a strong bend upon binding to terminal repeat viral DNA.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 10039, doi. 10.1093/nar/gkv987

By:

Ponnusamy, Rajesh;
Petoukhov, Maxim V.;
Correia, Bruno;
Custodio, Tania F.;
Juillard, Franceline;
Min Tan;
de Miranda, Marta Pires;
Carrondo, Maria A.;
Simas, J. Pedro;
Kaye, Kenneth M.;
Svergun, Dmitri I.;
McVey, Colin E.

Publication type:

Article

A framework for improving microRNA prediction in non-human genomes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 1, doi. 10.1093/nar/gkv698

By:

Peace, Robert J.;
Biggar, Kyle K.;
Storey, Kenneth B.;
Green, James R.

Publication type:

Article

NUCKS1 is a novel RAD51AP1 paralog important for homologous recombination and genome stability.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9817, doi. 10.1093/nar/gkv859

By:

Parplys, Ann C.;
Weixing Zhao;
Sharma, Neelam;
Groesser, Torsten;
Fengshan Liang;
Maranon, David G.;
Leung, Stanley G.;
Grundt, Kirsten;
Dray, Eloïse;
Idate, Rupa;
Østvold, Anne Carine;
Schild, David;
Sung, Patrick;
Wiese, Claudia

Publication type:

Article

Control of the localization and function of a miRNA silencing component TNRC6A by Argonaute protein.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9856, doi. 10.1093/nar/gkv1026

By:

Kenji Nishi;
Tomoko Takahashi;
Masataka Suzawa;
Takuya Miyakawa;
Tatsuya Nagasawa;
Ming, Yvelt;
Masaru Tanokura;
Kumiko Ui-Tei

Publication type:

Article

Utilizing mapping targets of sequences underrepresented in the reference assembly to reduce false positive alignments.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 1, doi. 10.1093/nar/gkv671

By:

Miga, Karen H.;
Eisenhart, Christopher;
Kent, W. James

Publication type:

Article

Functional interaction of Rpb1 and Spt5 C-terminal domains in co-transcriptional histone modification.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9766, doi. 10.1093/nar/gkv837

By:

Mbogning, Jean;
Pagé, Viviane;
Burston, Jillian;
Schwenger, Emily;
Fisher, Robert P.;
Schwer, Beate;
Shuman, Stewart;
Tanny, Jason C.

Publication type:

Article

Epigenetic program and transcription factor circuitry of dendritic cell development.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9680, doi. 10.1093/nar/gkv1056

By:

Qiong Lin;
Chauvistré, Heike;
Costa, Ivan G.;
Gusmao, Eduardo G.;
Saskia Mitzka;
Hänzelmann, Sonja;
Baying, Bianka;
Klisch, Theresa;
Moriggl, Richard;
Hennuy, Benoit;
Smeets, Hubert;
Hoffmann, Kurt;
Benes, Vladimir;
Seré, Kristin;
Zenke, Martin

Publication type:

Article

A novel mode of nuclease action is revealed by the bacterial Mre11/Rad50 complex.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9804, doi. 10.1093/nar/gkv855

By:

Chew Theng Lim;
Pey Jiun Lai;
Leach, David R. F.;
Hisaji Maki;
Asako Furukohri

Publication type:

Article

Enriching CRISPR-Cas9 targeted cells by co-targeting the HPRT gene.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 1, doi. 10.1093/nar/gkv675

By:

Shuren Liao;
Tammaro, Margaret;
Hong Yan

Publication type:

Article

Molecular basis for the substrate specificity and catalytic mechanism of thymine-7-hydroxylase in fungi.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 10026, doi. 10.1093/nar/gkv979

By:

Wenjing Li;
Tianlong Zhang;
Jianping Ding

Publication type:

Article

Inner nuclear envelope protein SUN1 plays a prominent role in mammalian mRNA export.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9874, doi. 10.1093/nar/gkv1058

By:

Ping Li;
Noegel, Angelika A.

Publication type:

Article

Architecture of the eIF2B regulatory subcomplex and its implications for the regulation of guanine nucleotide exchange on eIF2.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9994, doi. 10.1093/nar/gkv930

By:

Kuhle, Bernhard;
Eulig, Nora K.;
Ficner, Ralf

Publication type:

Article

Perturbations of PIP3 signalling trigger a global remodelling of mRNA landscape and reveal a transcriptional feedback loop.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9663, doi. 10.1093/nar/gkv1015

By:

Kiselev, Vladimir Yu.;
Juvin, Veronique;
Malek, Mouhannad;
Luscombe, Nicholas;
Hawkins, Phillip;
Le Novère, Nicolas;
Stephens, Len

Publication type:

Article

MRPrimer: a MapReduce-based method for the thorough design of valid and ranked primers for PCR.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 1, doi. 10.1093/nar/gkv632

By:

Hyerin Kim;
NaNa Kang;
Kang-Wook Chon;
Seonho Kim;
NaHye Lee;
JaeHyung Koo;
Min-Soo Kim

Publication type:

Article

Crystallographic characterization of the ribosomal binding site and molecular mechanism of action of Hygromycin A.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 10015, doi. 10.1093/nar/gkv975

By:

Tatsuya Kaminishi;
Schedlbauer, Andreas;
Fabbretti, Attilio;
Brandi, Letizia;
Ochoa-Lizarralde, Borja;
Cheng-Guang He;
Milón, Pohl;
Connell, Sean R.;
Gualerzi, Claudio O.;
Fucini, Paola

Publication type:

Article

Corrigendum.

Published in:: Nucleic Acids Research, 2015, v. 43, n. 20, p. 10081, doi. 10.1093/nar/gkv974
Publication type:: Article

The WRN exonuclease domain protects nascent strands from pathological MRE11/EXO1-dependent degradation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9788, doi. 10.1093/nar/gkv836

By:

Iannascoli, Chiara;
Palermo, Valentina;
Murfuni, Ivana;
Franchitto, Annapaola;
Pichierri, Pietro

Publication type:

Article

Biological chromodynamics: a general method for measuring protein occupancy across the genome by calibrating ChIP-seq.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 1, doi. 10.1093/nar/gkv670

By:

Bin Hu;
Petela, Naomi;
Kurze, Alexander;
Kok-Lung Chan;
Chapard, Christophe;
Nasmyth, Kim

Publication type:

Article

The ubiquitin ligase HERC3 attenuates NF-ΚB-dependent transcription independently of its enzymatic activity by delivering the RelA subunit for degradation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9889, doi. 10.1093/nar/gkv1064

By:

Hochrainer, Karin;
Pejanovic, Nadja;
Olaseun, Victoria A.;
Sheng Zhang;
Iadecola, Costantino;
Anrather, Josef

Publication type:

Article

The reverse transcription signature of N-1-methyladenosine in RNA-Seq is sequence dependent.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9950, doi. 10.1093/nar/gkv895

By:

Hauenschild, Ralf;
Tserovski, Lyudmil;
Schmid, Katharina;
Thüring, Kathrin;
Winz, Marie-Luise;
Sharma, Sunny;
Entian, Karl-Dieter;
Wacheul, Ludivine;
Lafontaine, Denis L. J.;
Anderson, James;
Alfonzo, Juan;
Hildebrandt, Andreas;
Jüschke, Andres;
Motorin, Yuri;
Helm, Mark

Publication type:

Article

GC skew is a conserved property of unmethylated CpG island promoters across vertebrates.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9729, doi. 10.1093/nar/gkv811

By:

Hartono, Stella R.;
Korf, Ian F.;
Chédin, Frédéric

Publication type:

Article

STAR3D: a stack-based RNA 3D structural alignment tool.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 1, doi. 10.1093/nar/gkv697

By:

Ping Ge;
Shaojie Zhang

Publication type:

Article

Assembly and analysis of eukaryotic Argonaute--RNA complexes in microRNA-target recognition.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9613, doi. 10.1093/nar/gkv990

By:

Hin Hark Gan;
Gunsalus, Kristin C.

Publication type:

Article

Mitochondrial poly(A) polymerase is involved in tRNA repair.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9937, doi. 10.1093/nar/gkv891

By:

Fiedler, Mario;
Rossmanith, Walter;
Wahle, Elmar;
Rammelt, Christiane

Publication type:

Article

Count ratio model reveals bias affecting NGS fold changes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 1, doi. 10.1093/nar/gkv696

By:

Erhard, Florian;
Zimmer, Ralf

Publication type:

Article

Multiplexed highly-accurate DNA sequencing of closely-related HIV-1 variants using continuous long reads from single molecule, real-time sequencing.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 1, doi. 10.1093/nar/gkv630

By:

Dilernia, Dario A.;
Jung-Ting Chien;
Monaco, Daniela C.;
Brown, Michael P. S.;
Ende, Zachary;
Deymier, Martin J.;
Ling Yue;
Paxinos, Ellen E.;
Allen, Susan;
Tirado-Ramos, Alfredo;
Hunter, Eric

Publication type:

Article

miR-58 family and TGF-β pathways regulate each other in Caenorhabditis elegans.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9978, doi. 10.1093/nar/gkv923

By:

de Lucas, María Pilar;
Sáez, Alberto G.;
Lozano, Encarnación

Publication type:

Article

DNA-binding proteins from marine bacteria expand the known sequence diversity of TALE-like repeats.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 10065, doi. 10.1093/nar/gkv1053

By:

de Lange, Orlando;
Wolf, Christina;
Thiel, Philipp;
Krüger, Jens;
Kleusch, Christian;
Kohlbacher, Oliver;
Lahaye, Thomas

Publication type:

Article

The histone variant H2A.Z is an important regulator of enhancer activity.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9742, doi. 10.1093/nar/gkv825

By:

Brunelle, Mylène;
Markovits, Alexei Nordell;
Rodrigue, Sébastien;
Lupien, Mathieu;
Jacques, Pierre-Étienne;
Gévry, Nicolas

Publication type:

Article

Mechanism of aromatic amine carcinogen bypass by the Y-family polymerase, Dpo4.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9918, doi. 10.1093/nar/gkv1067

By:

Brenlla, Alfonso;
Rueda, David;
Romano, Louis J.

Publication type:

Article

Hairpins under tension: RNA versus DNA.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9928, doi. 10.1093/nar/gkv860

By:

Bercy, Mathilde;
Bockelmann, Ulrich

Publication type:

Article

Oct-2 forms a complex with Oct-1 on the iNOS promoter and represses transcription by interfering with recruitment of RNA PolII by Oct-1.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9757, doi. 10.1093/nar/gkv829

By:

Bentrari, Fatima;
Chantôme, Aurelie;
Knights, Andrew;
Jeannin, Jean-François;
Pance, Alena

Publication type:

Article

Biologically-supported structural model for a viral satellite RNA.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9965, doi. 10.1093/nar/gkv917

By:

Ashton, Peter;
Baodong Wu;
D'Angelo, Jessica;
Grigull, Jörg;
White, K. Andrew

Publication type:

Article

Selection of 2'-deoxy-2'-fluoroarabinonucleotide (FANA) aptamers that bind HIV-1 reverse transcriptase with picomolar affinity.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 20, p. 9587, doi. 10.1093/nar/gkv1057

By:

Ferreira-Bravo, Irani Alves;
Cozens, Christopher;
Holliger, Philipp;
DeStefano, Jeffrey J.

Publication type:

Article