Works matching IS 03051048 AND DT 2015 AND VI 43 AND IP 19

Results: 43

An atlas of RNA base pairs involving modified nucleobases with optimal geometries and accurate energies.

Published in:: Nucleic Acids Research, 2015, v. 43, n. 19, p. 9573, doi. 10.1093/nar/gkv925
Publication type:: Article

Systematic reconstruction of binding and stability landscapes of the fluorogenic aptamer spinach.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9564, doi. 10.1093/nar/gkv944

By:

Ketterer, Simon;
Fuchs, David;
Weber, Wilfried;
Meier, Matthias

Publication type:

Article

MCM ring hexamerization is a prerequisite for DNA-binding.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9553, doi. 10.1093/nar/gkv914

By:

Froelich, Clifford A.;
Nourse, Amanda;
Enemark, Eric J.

Publication type:

Article

Thymine DNA glycosylase exhibits negligible affinity for nucleobases that it removes from DNA.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9541, doi. 10.1093/nar/gkv890

By:

Malik, Shuja S.;
Coey, Christopher T.;
Varney, Kristen M.;
Pozharski, Edwin;
Drohat, Alexander C.

Publication type:

Article

Co-evolution of quaternary organization and novel RNA tertiary interactions revealed in the crystal structure of a bacterial protein-RNA toxin-antitoxin system.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9529, doi. 10.1093/nar/gkv868

By:

Feng Rao;
Short, Francesca L.;
Voss, Jarrod E.;
Blower, Tim R.;
Orme, Anastasia L.;
Whittaker, Tom E.;
Luisi, Ben F.;
Salmond, George P. C.

Publication type:

Article

EF-Tu dynamics during pre-translocation complex formation: EF-Tu·GDP exits the ribosome via two different pathways.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9519, doi. 10.1093/nar/gkv856

By:

Wei Liu;
Chunlai Chen;
Kavaliauskas, Darius;
Knudsen, Charlotte R.;
Goldman, Yale E.;
Cooperman, Barry S.

Publication type:

Article

Cooperation meets competition in microRNA-mediated DMPK transcript regulation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9500, doi. 10.1093/nar/gkv849

By:

Koscianska, Edyta;
Witkos, Tomasz M.;
Kozlowska, Emilia;
Wojciechowska, Marzena;
Krzyzosiak, Wlodzimierz J.

Publication type:

Article

The role of wobble uridine modifications in +1 translational frameshifting in eukaryotes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9489, doi. 10.1093/nar/gkv832

By:

Tükenmez, Hasan;
Hao Xu;
Esberg, Anders;
Byström, Anders S.

Publication type:

Article

RAG-3D: a search tool for RNA 3D substructures.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9474, doi. 10.1093/nar/gkv823

By:

Zahran, Mai;
Bayrak, Cigdem Sevim;
Elmetwaly, Shereef;
Schlick, Tamar

Publication type:

Article

mRNA and DNA selection via protein multimerization: YB-1 as a case study.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9457, doi. 10.1093/nar/gkv822

By:

Kretov, Dmitry A.;
Curmi, Patrick A.;
Hamon, Loic;
Abrakhi, Sanae;
Desforges, Bénédicte;
Ovchinnikov, Lev P.;
Pastré, David

Publication type:

Article

An extended dsRBD is required for post-transcriptional modification in human tRNAs.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9446, doi. 10.1093/nar/gkv989

By:

Bou-Nader, Charles;
Pecqueur, Ludovic;
Bregeon, Damien;
Kamah, Amina;
Guérineau, Vincent;
Golinelli-Pimpaneau, Béatrice;
Guimarães, Beatriz G.;
Fontecave, Marc;
Hamdane, Djemel

Publication type:

Article

RNA binding to APOBEC3G induces the disassembly of functional deaminase complexes by displacing single-stranded DNA substrates.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9434, doi. 10.1093/nar/gkv970

By:

Polevoda, Bogdan;
McDougall, William M.;
Tun, Bradley N.;
Cheung, Michael;
Salter, Jason D.;
Friedman, Alan E.;
Smith, Harold C.

Publication type:

Article

Slicer-independent mechanism drives small-RNA strand separation during human RISC assembly.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9418, doi. 10.1093/nar/gkv937

By:

June Hyun Park;
Chanseok Shin

Publication type:

Article

The novel influenza A virus protein PA-X and its naturally deleted variant show different enzymatic properties in comparison to the viral endonuclease PA.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9405, doi. 10.1093/nar/gkv926

By:

Bavagnoli, Laura;
Cucuzza, Stefano;
Campanini, Giulia;
Rovida, Francesca;
Paolucci, Stefania;
Baldanti, Fausto;
Maga, Giovanni

Publication type:

Article

NPGPx modulates CPEB2-controlled HIF-1α RNA translation in response to oxidative stress.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9393, doi. 10.1093/nar/gkv1010

By:

Po-Jen Chen;
Jui-Yun Weng;
Pang-Hung Hsu;
Jin-Yuh Shew;
Yi-Shuian Huang;
Wen-Hwa Lee

Publication type:

Article

Nuclear domain 'knock-in' screen for the evaluation and identification of small molecule enhancers of CRISPR-based genome editing.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9379, doi. 10.1093/nar/gkv993

By:

Pinder, Jordan;
Salsman, Jayme;
Dellaire, Graham

Publication type:

Article

MiRNA-891a-5p mediates HIV-1 Tat and KSHV Orf-K1 synergistic induction of angiogenesis by activating NF-κB signaling.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9362, doi. 10.1093/nar/gkv988

By:

Shuihong Yao;
Minmin Hu;
Tingting Hao;
Wan Li;
Xue Xue;
Min Xue;
Xiaofei Zhu;
Feng Zhou;
Di Qin;
Qin Yan;
Jianzhong Zhu;
Shou-Jiang Gao;
Chun Lu

Publication type:

Article

A cytoplasmic pathway for gapmer antisense oligonucleotide-mediated gene silencing in mammalian cells.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9350, doi. 10.1093/nar/gkv964

By:

Castanotto, Daniela;
Min Lin;
Kowolik, Claudia;
LiAnn Wang;
Xiao-Qin Ren;
Soifer, Harris S.;
Koch, Troels;
Hansen, Bo Rode;
Oerum, Henrik;
Armstrong, Brian;
Zhigang Wang;
Bauer, Paul;
Rossi, John;
Stein, C. A.

Publication type:

Article

Molecular basis of the attenuated phenotype of human APOBEC3B DNA mutator enzyme.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9340, doi. 10.1093/nar/gkv935

By:

Caval, Vincent;
Bouzidi, Mohamed S.;
Suspène, Rodolphe;
Laude, Hélène;
Dumargne, Marie-Charlotte;
Bashamboo, Anu;
Krey, Thomas;
Vartanian, Jean-Pierre;
Wain-Hobson, Simon

Publication type:

Article

Integrated genome-wide analysis of genomic changes and gene regulation in human adrenocortical tissue samples.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9327, doi. 10.1093/nar/gkv908

By:

Gara, Sudheer Kumar;
Yonghong Wang;
Patel, Dhaval;
Yi Liu-Chittenden;
Jain, Meenu;
Boufraqech, Myriem;
Lisa Zhang;
Meltzer, Paul S.;
Kebebew, Electron

Publication type:

Article

Identification of novel post-transcriptional features in olfactory receptor family mRNAs.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9314, doi. 10.1093/nar/gkv324

By:

Shum, Eleen Y.;
Espinoza, Josh L.;
Ramaiah, Madhuvanthi;
Wilkinson, Miles F.

Publication type:

Article

Topoisomerase 1-dependent deletions initiated by incision at ribonucleotides are biased to the non-transcribed strand of a highly activated reporter.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9306, doi. 10.1093/nar/gkv824

By:

Jang-Eun Cho;
Nayun Kim;
Jinks-Robertson, Sue

Publication type:

Article

Mapping the interactions of the single-stranded DNA binding protein of bacteriophage T4 (gp32) with DNA lattices at single nucleotide resolution: polynucleotide binding and cooperativity.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9291, doi. 10.1093/nar/gkv818

By:

Jose, Davis;
Weitzel, Steven E.;
Baase, Walter A.;
Michael, Miya M.;
von Hippel, Peter H.

Publication type:

Article

Mapping the interactions of the single-stranded DNA binding protein of bacteriophage T4 (gp32) with DNA lattices at single nucleotide resolution: gp32 monomer binding.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9276, doi. 10.1093/nar/gkv817

By:

Jose, Davis;
Weitzel, Steven E.;
Baase, Walter A.;
von Hippel, Peter H.

Publication type:

Article

Regulation of DNA replication at the end of the mitochondrial D-loop involves the helicase TWINKLE and a conserved sequence element.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9262, doi. 10.1093/nar/gkv804

By:

Jemt, Elisabeth;
Persson, Örjan;
Yonghong Shi;
Mehmedovic, Majda;
Uhler, Jay P.;
López, Marcela Dávila;
Freyer, Christoph;
Gustafsson, Claes M.;
Samuelsson, Tore;
Falkenberg, Maria

Publication type:

Article

The interaction of ω<sub>2</sub> with the RNA polymerase &#946' subunit functions as an activation to repression switch.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9249, doi. 10.1093/nar/gkv788

By:

Volante, Andrea;
Carrasco, Begoña;
Tabone, Mariangela;
Alonso, Juan C.

Publication type:

Article

A bacterial regulatory RNA attenuates virulence, spread and human host cell phagocytosis.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9232, doi. 10.1093/nar/gkv783

By:

Le Pabic, Hélène;
Germain-Amiot, Nöella;
Bordeau, Valérie;
Felden, Brice

Publication type:

Article

Mediator independently orchestrates multiple steps of preinitiation complex assembly in vivo.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9214, doi. 10.1093/nar/gkv782

By:

Eyboulet, Fanny;
Wydau-Dematteis, Sandra;
Eychenne, Thomas;
Alibert, Olivier;
Neil, Helen;
Boschiero, Claire;
Nevers, Marie-Claire;
Volland, Hervé;
Cornu, David;
Redeker, Virginie;
Werner, Michel;
Soutourina, Julie

Publication type:

Article

Global identification of the genetic networks and cis-regulatory elements of the cold response in zebrafish.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9198, doi. 10.1093/nar/gkv780

By:

Peng Hu;
Mingli Liu;
Dong Zhang;
Jinfeng Wang;
Hongbo Niu;
Yimeng Liu;
Zhichao Wu;
Bingshe Han;
Wanying Zhai;
Yu Shen;
Liangbiao Chen

Publication type:

Article

Joint modeling of RNase footprint sequencing profiles for genome-wide inference of RNA structure.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9187, doi. 10.1093/nar/gkv950

By:

Chenchen Zou;
Zhengqing Ouyang

Publication type:

Article

Searching target sites on DNA by proteins: Role of DNA dynamics under confinement.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9176, doi. 10.1093/nar/gkv931

By:

Mondal, Anupam;
Bhattacherjee, Arnab

Publication type:

Article

Beyond the one-locus-one-miRNA paradigm: microRNA isoforms enable deeper insights into breast cancer heterogeneity.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9158, doi. 10.1093/nar/gkv922

By:

Telonis, Aristeidis G.;
Loher, Phillipe;
Yi Jing;
Londin, Eric;
Rigoutsos, Isidore

Publication type:

Article

A structural approach reveals how neighbouring C2H2 zinc fingers influence DNA binding specificity.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9147, doi. 10.1093/nar/gkv919

By:

Garton, Michael;
Najafabadi, Hamed S.;
Schmitges, Frank W.;
Radovani, Ernest;
Hughes, Timothy R.;
Kim, Philip M.

Publication type:

Article

Base damage, local sequence context and TP53 mutation hotspots: a molecular dynamics study of benzo[a]pyrene induced DNA distortion and mutability.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9133, doi. 10.1093/nar/gkv910

By:

Menzies, Georgina E.;
Reed, Simon H.;
Brancale, Andrea;
Lewis, Paul D.

Publication type:

Article

Enhancing antisense efficacy with multimers and multi-targeting oligonucleotides (MTOs) using cleavable linkers.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9123, doi. 10.1093/nar/gkv992

By:

Subramanian, Romesh R.;
Wysk, Mark A.;
Ogilvie, Kathleen M.;
Bhat, Abhijit;
Bing Kuang;
Rockel, Thomas D.;
Weber, Markus;
Uhlmann, Eugen;
Krieg, Arthur M.

Publication type:

Article

Influence of 5-N-carboxamide modifications on the thermodynamic stability of oligonucleotides.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9107, doi. 10.1093/nar/gkv981

By:

Wolk, Steven K.;
Shoemaker, Richard K.;
Mayfield, Wes S.;
Mestdagh, Andrew L.;
Janjic, Nebojsa

Publication type:

Article

Methylation of histone H3 lysine 9 occurs during translation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9097, doi. 10.1093/nar/gkv929

By:

Rivera, Carlos;
Saavedra, Francisco;
Alvarez, Francisca;
Díaz-Celis, César;
Ugalde, Valentina;
Jianhua Li;
Forné, Ignasi;
Gurard-Levin, Zachary A.;
Almouzni, Geneviève;
Imhof, Axel;
Loyola, Alejandra

Publication type:

Article

ECHO-liveFISH: in vivo RNA labeling reveals dynamic regulation of nuclear RNA foci in living tissues.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 1E, doi. 10.1093/nar/gkv614

By:

Ikumi Oomoto;
Asuka Suzuki-Hirano;
Hiroki Umeshima;
Yong-Woon Han;
Hiroyuki Yanagisawa;
Carlton, Peter;
Yoshie Harada;
Mineko Kengaku;
Akimitsu Okamoto;
Tomomi Shimogori;
Wang, Dan Ohtan

Publication type:

Article

Simultaneous live imaging of the transcription and nuclear position of specific genes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 1D, doi. 10.1093/nar/gkv624

By:

Hiroshi Ochiai;
Takeshi Sugawara;
Takashi Yamamoto

Publication type:

Article

Efficient conditional knockout targeting vector construction using co-selection BAC recombineering (CoSBR).

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 1C, doi. 10.1093/nar/gkv600

By:

Newman, Robert J.;
Roose-Girma, Merone;
Warming, Søren

Publication type:

Article

Ca<sup>2+</sup> enrichment in culture medium potentiates effect of oligonucleotides.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 1B, doi. 10.1093/nar/gkv626

By:

Shin-ichiro Hori;
Tsuyoshi Yamamoto;
Reiko Waki;
Shunsuke Wada;
Fumito Wada;
Mio Noda;
Satoshi Obika

Publication type:

Article

BioJazz: in silico evolution of cellular networks with unbounded complexity using rule-based modeling.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 1A, doi. 10.1093/nar/gkv595

By:

Song Feng;
Ollivier, Julien F.;
Swain, Peter S.;
Soyer, Orkun S.

Publication type:

Article

By the company they keep: interaction networks define the binding ability of transcription factors.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 1, doi. 10.1093/nar/gkv607

By:

Cirillo, Davide;
Botta-Orfila, Teresa;
Tartaglia, Gian Gaetano

Publication type:

Article