Works matching IS 03051048 AND DT 2015 AND VI 43 AND IP 18

Results: 46

Corrigendum.

Published in:: Nucleic Acids Research, 2015, v. 43, n. 18, p. 9095, doi. 10.1093/nar/gkv924
Publication type:: Article

Robust, tunable genetic memory from protein sequestration combined with positive feedback.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 9086, doi. 10.1093/nar/gkv936

By:

Shopera, Tatenda;
Henson, William R.;
Ng, Andrew;
Young Je Lee;
Kenneth Ng;
Tae Seok Moon

Publication type:

Article

Redesign of the monomer-monomer interface of Cre recombinase yields an obligate heterotetrameric complex.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 9076, doi. 10.1093/nar/gkv901

By:

Chi Zhang;
Myers, Connie A.;
Zongtai Qi;
Mitra, Robi D.;
Corbo, Joseph C.;
Havranek, James J.

Publication type:

Article

Structure of mitochondrial poly(A) RNA polymerase reveals the structural basis for dimerization, ATP selectivity and the SPAX4 disease phenotype.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 9065, doi. 10.1093/nar/gkv861

By:

Lapkouski, Mikalai;
Hällberg, B. Martin

Publication type:

Article

Structural basis for the Smad5 MH1 domain to recognize different DNA sequences.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 9051, doi. 10.1093/nar/gkv848

By:

Nan Chai;
Wan-Xin Li;
Jue Wang;
Zhi-Xin Wang;
Shi-Ming Yang;
Jia-Wei Wu

Publication type:

Article

Role of a non-canonical surface of Rad6 in ubiquitin conjugating activity.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 9039, doi. 10.1093/nar/gkv845

By:

Kumar, Pankaj;
Magala, Pearl;
Geiger-Schuller, Kathryn R.;
Majumdar, Ananya;
Tolman, Joel R.;
Wolberger, Cynthia

Publication type:

Article

Crystal structure of the full-length bacterial selenocysteine-specific elongation factor SelB.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 9028, doi. 10.1093/nar/gkv833

By:

Yuzuru Itoh;
Shun-ichi Sekine;
Shigeyuki Yokoyama

Publication type:

Article

Noncanoncial signal recognition particle RNAs in a major eukaryotic phylum revealed by purification of SRP from the human pathogen Cryptococcus neoformans.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 9017, doi. 10.1093/nar/gkv819

By:

Dumesic, Phillip A.;
Rosenblad, Magnus A.;
Samuelsson, Tore;
Nguyen, Tiffany;
Moresco, James J.;
Yates III, John R.;
Madhani, Hiten D.

Publication type:

Article

TRAP150 interacts with the RNA-binding domain of PSF and antagonizes splicing of numerous PSF-target genes in T cells.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 9006, doi. 10.1093/nar/gkv816

By:

Yarosh, Christopher A.;
Tapescu, Iulia;
Thompson, Matthew G.;
Jinsong Qiu;
Mallory, Michael J.;
Xiang-Dong Fu;
Lynch, Kristen W.

Publication type:

Article

TDP-43 affects splicing profiles and isoform production of genes involved in the apoptotic and mitotic cellular pathways.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8990, doi. 10.1093/nar/gkv814

By:

De Conti, Laura;
Akinyi, Maureen V.;
Mendoza-Maldonado, Ramiro;
Romano, Maurizio;
Baralle, Marco;
Buratti, Emanuele

Publication type:

Article

NUFIP and the HSP90/R2TP chaperone bind the SMN complex and facilitate assembly of U4-specific proteins.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8973, doi. 10.1093/nar/gkv809

By:

Bizarro, Jonathan;
Dodré, Maxime;
Huttin, Alexandra;
Charpentier, Bruno;
Schlotter, Florence;
Branlant, Christiane;
Verheggen, Céline;
Massenet, Séverine;
Bertrand, Edouard

Publication type:

Article

RlmCD-mediated U747 methylation promotes efficient G748 methylation by methyltransferase RlmA<sup>II</sup> in 23S rRNA in Streptococcus pneumoniae; interplay between two rRNA methylations responsible for telithromycin susceptibility.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8964, doi. 10.1093/nar/gkv609

By:

Tatsuma Shoji;
Akiko Takaya;
Yoshiharu Sato;
Satoshi Kimura;
Tsutomu Suzuki;
Tomoko Yamamoto

Publication type:

Article

The rates of the major steps in the molecular mechanism of RNase H1-dependent antisense oligonucleotide induced degradation of RNA.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8955, doi. 10.1093/nar/gkv920

By:

Vickers, Timothy A.;
Crooke, Stanley T.

Publication type:

Article

The Bacteroides sp. 3_1_23 Pif1 protein is a multifunctional helicase.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8942, doi. 10.1093/nar/gkv916

By:

Na-Nv Liu;
Xiao-Lei Duan;
Xia Ai;
Yan-Tao Yang;
Ming Li;
Shuo-Xing Dou;
Rety, Stephane;
Deprez, Eric;
Xu-Guang Xi

Publication type:

Article

Structure and specificity of the RNA-guided endonuclease Cas9 during DNA interrogation, target binding and cleavage.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8924, doi. 10.1093/nar/gkv892

By:

Josephs, Eric A.;
Kocak, D. Dewran;
Fitzgibbon, Christopher J.;
McMenemy, Joshua;
Gersbach, Charles A.;
Marszalek, Piotr E.

Publication type:

Article

Interference activity of a minimal Type I CRISPR-Cas system from Shewanella putrefaciens.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8913, doi. 10.1093/nar/gkv882

By:

Dwarakanath, Srivatsa;
Brenzinger, Susanne;
Gleditzsch, Daniel;
Plagens, André;
Klingl, Andreas;
Thormann, Kai;
Randau, Lennart

Publication type:

Article

The STAT3 HIES mutation is a gain-of-function mutation that activates genes via AGG-element carrying promoters.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8898, doi. 10.1093/nar/gkv911

By:

Li Xu;
Jin-Jun Ji;
Wangping Le;
Xu, Yan S.;
Dandan Dou;
Jieli Pan;
Yifeng Jiao;
Tianfei Zhong;
Dehong Wu;
Yumei Wang;
Chengping Wen;
Guan-Qun Xie;
Feng Yao;
Heng Zhao;
Yong-Sheng Fan;
Chin, Y. Eugene

Publication type:

Article

Nucleolin stabilizes G-quadruplex structures folded by the LTR promoter and silences HIV-1 viral transcription.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8884, doi. 10.1093/nar/gkv897

By:

Tosoni, Elena;
Frasson, Ilaria;
Scalabrin, Matteo;
Perrone, Rosalba;
Butovskaya, Elena;
Nadai, Matteo;
Palù, Giorgio;
Fabris, Dan;
Richter, Sara N.

Publication type:

Article

Cooperation between SMYD3 and PC4 drives a distinct transcriptional program in cancer cells.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8868, doi. 10.1093/nar/gkv874

By:

Jin-Man Kim;
Kyunghwan Kim;
Schmidt, Thomas;
Punj, Vasu;
Tucker, Haley;
Rice, Judd C.;
Ulmer, Tobias S.;
Woojin An

Publication type:

Article

A ruthenium dimer complex with a flexible linker slowly threads between DNA bases in two distinct steps.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8856, doi. 10.1093/nar/gkv864

By:

Bahira, Meriem;
McCauley, Micah J.;
Almaqwashi, Ali A.;
Lincoln, Per;
Westerlund, Fredrik;
Rouzina, Ioulia;
Williams, Mark C.

Publication type:

Article

Cell type-selective disease-association of genes under high regulatory load.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8839, doi. 10.1093/nar/gkv863

By:

Galhardo, Mafalda;
Berninger, Philipp;
Thanh-Phuong Nguyen;
Sauter, Thomas;
Sinkkonen, Lasse

Publication type:

Article

A conserved Polϵ binding module in Ctf18-RFC is required for S-phase checkpoint activation downstream of Mec1.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8830, doi. 10.1093/nar/gkv799

By:

García-Rodríguez, Luis J.;
De Piccoli, Giacomo;
Marchesi, Vanessa;
Jones, Richard C.;
Edmondson, Ricky D.;
Labib, Karim

Publication type:

Article

hSSB1 (NABP2/OBFC2B) is required for the repair of 8-oxo-guanine by the hOGG1-mediated base excision repair pathway.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8817, doi. 10.1093/nar/gkv790

By:

Paquet, Nicolas;
Adams, Mark N.;
Leong, Vincent;
Ashton, Nicholas W.;
Touma, Christine;
Gamsjaeger, Roland;
Cubeddu, Liza;
Beard, Sam;
Burgess, Joshua T.;
Bolderson, Emma;
O'Byrne, Ken J.;
Richard, Derek J.

Publication type:

Article

Structure-function relationships governing activity and stability of a DNA alkylation damage repair thermostable protein.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8801, doi. 10.1093/nar/gkv774

By:

Perugino, Giuseppe;
Miggiano, Riccardo;
Serpe, Mario;
Vettone, Antonella;
Valenti, Anna;
Lahiri, Samarpita;
Rossi, Franca;
Rossi, Mosè;
Rizzi, Menico;
Ciaramella, Maria

Publication type:

Article

The N-terminus of RPA large subunit and its spatial position are important for the 5'->3' resection of DNA double-strand breaks.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8790, doi. 10.1093/nar/gkv764

By:

Tammaro, Margaret;
Shuren Liao;
McCane, Jill;
Hong Yan

Publication type:

Article

Loss of EZH2 results in precocious mammary gland development and activation of STAT5-dependent genes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8774, doi. 10.1093/nar/gkv776

By:

Kyung Hyun Yoo;
Sumin Oh;
Keunsoo Kang;
Hensel, Tim;
Robinson, Gertraud W.;
Hennighausen, Lothar

Publication type:

Article

Telomeric repeat silencing in germ cells is essential for early development in Drosophila.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8762, doi. 10.1093/nar/gkv775

By:

Morgunova, Valeriya;
Akulenko, Natalia;
Radion, Elizaveta;
Olovnikov, Ivan;
Abramov, Yuri;
Olenina, Ludmila V.;
Shpiz, Sergey;
Kopytova, Daria V.;
Georgieva, Sofia G.;
Kalmykova, Alla

Publication type:

Article

DNA sequence templates adjacent nucleosome and ORC sites at gene amplification origins in Drosophila.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8746, doi. 10.1093/nar/gkv766

By:

Jun Liu;
Zimmer, Kurt;
Rusch, Douglas B.;
Paranjape, Neha;
Podicheti, Ram;
Haixu Tang;
Calvi, Brian R.

Publication type:

Article

The master regulator of IncA/C plasmids is recognized by the Salmonella Genomic island SGI1 as a signal for excision and conjugal transfer.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8735, doi. 10.1093/nar/gkv758

By:

Kiss, János;
Papp, Péter Pál;
Szabó, Mónika;
Farkas, Tibor;
Murányi, Gábor;
Szakállas, Erik;
Olasz, Ferenc

Publication type:

Article

ATP dependent NS3 helicase interaction with RNA: insights from molecular simulations.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8725, doi. 10.1093/nar/gkv872

By:

Pérez-Villa, Andrea;
Darvas, Maria;
Bussi, Giovanni

Publication type:

Article

A legion of potential regulatory sRNAs exists beyond the typical microRNAs microcosm.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8713, doi. 10.1093/nar/gkv871

By:

Jha, Ashwani;
Panzade, Ganesh;
Pandey, Rajesh;
Shankar, Ravi

Publication type:

Article

A predictive modeling approach for cell line-specific long-range regulatory interactions.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8694, doi. 10.1093/nar/gkv865

By:

Roy, Sushmita;
Siahpirani, Alireza Fotuhi;
Chasman, Deborah;
Knaack, Sara;
Ay, Ferhat;
Stewart, Ron;
Wilson, Michael;
Sridharan, Rupa

Publication type:

Article

Extended molecular dynamics of a c-kit promoter quadruplex.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8673, doi. 10.1093/nar/gkv785

By:

Islam, Barira;
Stadlbauer, Petr;
Krepl, Miroslav;
Koca, Jaroslav;
Neidle, Stephen;
Haider, Shozeb;
Sponer, Jiri

Publication type:

Article

Guanabenz (Wytensin™) selectively enhances uptake and efficacy of hydrophobically modified siRNAs.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8664, doi. 10.1093/nar/gkv942

By:

Osborn, Maire F.;
Alterman, Julia F.;
Nikan, Mehran;
Hong Cao;
Didiot, Marie C.;
Hassler, Matthew R.;
Coles, Andrew H.;
Khvorova, Anastasia

Publication type:

Article

Sequence-specific recognition of DNA minor groove by an NIR-fluorescence switch-on probe and its potential applications.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8651, doi. 10.1093/nar/gkv875

By:

Narayanaswamy, Nagarjun;
Das, Shubhajit;
Samanta, Pralok K.;
Banu, Khadija;
Sharma, Guru Prasad;
Mondal, Neelima;
Dhar, Suman K.;
Pati, Swapan K.;
Govindaraju, T.

Publication type:

Article

In silico and in vitro evaluation of exonic and intronic off-target effects form a critical element of therapeutic ASO gapmer optimization.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8638, doi. 10.1093/nar/gkv857

By:

Kamola, Piotr J.;
Kitson, Jeremy D. A.;
Turner, Gemma;
Maratou, Klio;
Eriksson, Sofie;
Panjwani, Aliza;
Warnock, Linda C.;
Guilloux, Gaelle A. Douillard;
Moores, Kitty;
Koppe, Emma L.;
Wixted, William E.;
Wilson, Paul A.;
Gooderham, Nigel J.;
Gant, Timothy W.;
Clark, Kenneth L.;
Hughes, Stephen A.;
Edbrooke, Mark R.;
Parry, Joel D.

Publication type:

Article

G-quadruplexes and their regulatory roles in biology.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8627, doi. 10.1093/nar/gkv862

By:

Rhodes, Daniela;
Lipps, Hans J.

Publication type:

Article

Structure of a human translation termination complex.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 8615, doi. 10.1093/nar/gkv909

By:

Matheis, Sarah;
Berninghausen, Otto;
Becker, Thomas;
Beckmann, Roland

Publication type:

Article

Varying levels of complexity in transcription factor binding motifs.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. e119, doi. 10.1093/nar/gkv577

By:

Keilwagen, Jens;
Grau, Jan

Publication type:

Article

Bacteriophage strain typing by rapid single molecule analysis.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. e117, doi. 10.1093/nar/gkv563

By:

Grunwald, Assaf;
Dahan, Moran;
Giesbertz, Anna;
Nilsson, Adam;
Nyberg, Lena K.;
Weinhold, Elmar;
Ambjörnsson, Tobias;
Westerlund, Fredrik;
Ebenstein, Yuval

Publication type:

Article

Efficient production of superior dumbbell-shaped DNA minimal vectors for small hairpin RNA expression.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 1, doi. 10.1093/nar/gkv583

By:

Han Yu;
Xiaoou Jiang;
Kar Tong Tan;
Liting Hang;
Patzel, Volker

Publication type:

Article

RNASequel: accurate and repeat tolerant realignment of RNA-seq reads.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 1, doi. 10.1093/nar/gkv594

By:

Wilson, Gavin W.;
Stein, Lincoln D.

Publication type:

Article

Characterization of fusion genes and the significantly expressed fusion isoforms in breast cancer by hybrid sequencing.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 1, doi. 10.1093/nar/gkv562

By:

Weirather, Jason L.;
Afshar, Pegah Tootoonchi;
Clark, Tyson A.;
Tseng, Elizabeth;
Powers, Linda S.;
Underwood, Jason G.;
Zabner, Joseph;
Korlach, Jonas;
Wing Hung Wong;
Kin Fai Au

Publication type:

Article

A mass spectrometry-based method for comprehensive quantitative determination of post-transcriptional RNA modifications: the complete chemical structure of Schizosaccharomyces pombe ribosomal RNAs.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 1, doi. 10.1093/nar/gkv560

By:

Masato Taoka;
Yuko Nobe;
Masayuki Hori;
Aiko Takeuchi;
Shunpei Masaki;
Yoshio Yamauchi;
Hiroshi Nakayama;
Nobuhiro Takahashi;
Toshiaki Isobe

Publication type:

Article

Cas9-chromatin binding information enables more accurate CRISPR off-target prediction.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 1, doi. 10.1093/nar/gkv575

By:

Singh, Ritambhara;
Kuscu, Cem;
Quinlan, Aaron;
Yanjun Qi;
Adli, Mazhar

Publication type:

Article

High-throughput prediction of RNA, DNA and protein binding regions mediated by intrinsic disorder.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 1, doi. 10.1093/nar/gkv585

By:

Zhenling Peng;
Kurgan, Lukasz

Publication type:

Article