Works matching IS 03051048 AND DT 2015 AND VI 43 AND IP 17

Results: 44

Genome-wide analysis of YB-1-RNA interactions reveals a novel role of YB-1 in miRNA processing in glioblastoma multiforme.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8516, doi. 10.1093/nar/gkv779

By:

Shuai-Lai Wu;
Xing Fu;
Jinyan Huang;
Ting-Ting Jia;
Feng-Yang Zong;
Shi-Rong Mu;
Hong Zhu;
Yong Yan;
Shuwei Qiu;
Qun Wu;
Wei Yan;
Ying Peng;
Juxiang Chen;
Jingyi Hui

Publication type:

Article

The mRNA related ceRNA-ceRNA landscape and significance across 20 major cancer types.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8169, doi. 10.1093/nar/gkv853

By:

Juan Xu;
Yongsheng Li;
Jianping Lu;
Tao Pan;
Na Ding;
Zishan Wang;
Tingting Shao;
Jinwen Zhang;
Lihua Wang;
Xia Li

Publication type:

Article

Discovery of an essential nucleotidylating activity associated with a newly delineated conserved domain in the RNA polymerase-containing protein of all nidoviruses.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8416, doi. 10.1093/nar/gkv838

By:

Lehmann, Kathleen C.;
Gulyaeva, Anastasia;
Zevenhoven-Dobbe, Jessika C.;
Janssen, George M. C.;
Ruben, Mark;
Overkleeft, Hermen S.;
van Veelen, Peter A.;
Samborskiy, Dmitry V.;
Kravchenko, Alexander A.;
Leontovich, Andrey M.;
Sidorov, Igor A.;
Snijder, Eric J.;
Posthuma, Clara C.;
Gorbalenya, Alexander E.

Publication type:

Article

Nucleotidyl transferase assisted DNA labeling with different click chemistries.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 1, doi. 10.1093/nar/gkv544

By:

Winz, Marie-Luise;
Linder, Eva Christina;
André, Timon;
Becker, Juliane;
J¨aschke, Andres

Publication type:

Article

FANCD2 and REV1 cooperate in the protection of nascent DNA strands in response to replication stress.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8325, doi. 10.1093/nar/gkv737

By:

Yeran Yang;
Zhenbo Liu;
Fengli Wang;
Temviriyanukul, Piya;
Xiaolu Ma;
Yingfeng Tu;
Lingna Lv;
Yu-Fen Lin;
Min Huang;
Ting Zhang;
Huadong Pei;
Chen, Benjamin P. C.;
Jansen, Jacob G.;
de Wind, Niels;
Fischhaber, Paula L.;
Friedberg, Errol C.;
Tie-Shan Tang;
Caixia Guo

Publication type:

Article

Local sequence assembly reveals a high-resolution profile of somatic structural variations in 97 cancer genomes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8146, doi. 10.1093/nar/gkv831

By:

Jiali Zhuang;
Zhiping Weng

Publication type:

Article

Global analysis of RNA cleavage by 5'-hydroxyl RNA sequencing.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 1, doi. 10.1093/nar/gkv536

By:

Peach, Sally E.;
York, Kerri;
Hesselberth, Jay R.

Publication type:

Article

LARVA: an integrative framework for large-scale analysis of recurrent variants in noncoding annotations.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8123, doi. 10.1093/nar/gkv803

By:

Lochovsky, Lucas;
Jing Zhang;
Yao Fu;
Khurana, Ekta;
Gerstein, Mark

Publication type:

Article

The transcription factors SOX9 and SOX5/SOX6 cooperate genome-wide through super-enhancers to drive chondrogenesis.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8183, doi. 10.1093/nar/gkv688

By:

Liu, Chia-Feng;
Lefebvre, Veronique

Publication type:

Article

Optimizing RNA structures by sequence extensions using RNAcop.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8135, doi. 10.1093/nar/gkv813

By:

Hecker, Nikolai;
Christensen-Dalsgaard, Mikkel;
Seemann, Stefan E.;
Havgaard, Jakob H.;
Stadler, Peter F.;
Hofacker, Ivo L.;
Nielsen, Henrik;
Gorodkin, Jan

Publication type:

Article

A novel hybrid single molecule approach reveals spontaneous DNA motion in the nucleosome.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8391, doi. 10.1093/nar/gkv549

By:

Sijie Wei;
Falk, Samantha J.;
Black, Ben E.;
Tae-Hee Lee

Publication type:

Article

Mechanism of CRISPR-RNA guided recognition of DNA targets in Escherichia coli.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8381, doi. 10.1093/nar/gkv793

By:

van Erp, Paul B. G.;
Jackson, Ryan N.;
Carter, Joshua;
Golden, Sarah M.;
Bailey, Scott;
Wiedenheft, Blake

Publication type:

Article

The energetic basis of the DNA double helix: a combined microcalorimetric approach.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8577, doi. 10.1093/nar/gkv812

By:

Vaitiekunas, Paulius;
Crane-Robinson, Colyn;
Privalov, Peter L.

Publication type:

Article

Elongator-dependent modification of cytoplasmic tRNA<sup>Lys</sup><sub>UUU</sub> is required for mitochondrial function under stress conditions.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8368, doi. 10.1093/nar/gkv765

By:

Tigano, Marco;
Ruotolo, Roberta;
Dallabona, Cristina;
Fontanesi, Flavia;
Barrientos, Antoni;
Donnini, Claudia;
Ottonello, Simone

Publication type:

Article

Widespread alternative and aberrant splicing revealed by lariat sequencing.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8488, doi. 10.1093/nar/gkv763

By:

Stepankiw, Nicholas;
Raghavan, Madhura;
Fogarty, Elizabeth A.;
Grimson, Andrew;
Pleiss, Jeffrey A.

Publication type:

Article

Structural basis for selective targeting of leishmanial ribosomes: aminoglycoside derivatives as promising therapeutics.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8601, doi. 10.1093/nar/gkv821

By:

Shalev, Moran;
Rozenberg, Haim;
Smolkin, Boris;
Nasereddin, Abedelmajeed;
Kopelyanskiy, Dmitry;
Belakhov, Valery;
Schrepfer, Thomas;
Schacht, Jochen;
Jaffe, Charles L.;
Adir, Noam;
Baasov, Timor

Publication type:

Article

A unique uracil-DNA binding protein of the uracil DNA glycosylase superfamily.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8452, doi. 10.1093/nar/gkv854

By:

Pau Biak Sang;
Srinath, Thiruneelakantan;
Aravind Goud Patil;
Eui-Jeon Woo;
Varshney, Umesh

Publication type:

Article

Paradoxical suppression of small RNA activity at high Hfq concentrations due to random-order binding.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8502, doi. 10.1093/nar/gkv777

By:

Shiori Sagawa;
Jung-Eun Shin;
Hussein, Razika;
Lim, Han N.

Publication type:

Article

The yeast genome undergoes significant topological reorganization in quiescence.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8299, doi. 10.1093/nar/gkv723

By:

Rutledge, Mark T.;
Russo, Mariano;
Belton, Jon-Matthew;
Dekker, Job;
Broach, James R.

Publication type:

Article

Dissecting the target specificity of RNase H recruiting oligonucleotides using massively parallel reporter analysis of short RNA motifs.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8476, doi. 10.1093/nar/gkv759

By:

Rukov, Jakob Lewin;
Hagedorn, Peter H.;
Høy, Isabel Bro;
Yanping Feng;
Lindow, Morten;
Vinther, Jeppe

Publication type:

Article

Deciphering the principles that govern mutually exclusive expression of Plasmodium falciparum clag3 genes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8243, doi. 10.1093/nar/gkv730

By:

Rovira-Graells, Núria;
Crowley, Valerie M.;
Bancells, Cristina;
Mira-Martínez, Sofía;
Ribas de Pouplana, Lluís;
Cortés, Alfred

Publication type:

Article

The impact of the phosphomimetic eIF2α/Do n global translation, reinitiation and the integrated stress response is attenuated in N2a cells.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8392, doi. 10.1093/nar/gkv827

By:

Legrand, Noemie;
Jaquier-Gubler, Pascale;
Curran, Joseph

Publication type:

Article

A modular open platform for systematic functional studies under physiological conditions.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 1, doi. 10.1093/nar/gkv550

By:

Mulholland, Christopher B.;
Smets, Martha;
Schmidtmann, Elisabeth;
Leidescher, Susanne;
Markaki, Yolanda;
Hofweber, Mario;
Qin, Weihua;
Manzo, Massimiliano;
Kremmer, Elisabeth;
Thanisch, Katharina;
Bauer, Christina;
Rombaut, Pascaline;
Herzog, Franz;
Leonhardt, Heinrich;
Bultmann, Sebastian

Publication type:

Article

The FMRP/GRK4 mRNA interaction uncovers a new mode of binding of the Fragile X mental retardation protein in cerebellum.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8540, doi. 10.1093/nar/gkv801

By:

Maurin, Thomas;
Melko, Mireille;
Abekhoukh, Sabiha;
Khalfallah, Olfa;
Davidovic, Laetitia;
Jarjat, Marielle;
D'Antoni, Simona;
Catania, Maria Vincenza;
Moine, Hervé;
Bechara, Elias;
Bardoni, Barbara

Publication type:

Article

Disturbance-free rapid solution exchange for magnetic tweezers single-molecule studies.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 1, doi. 10.1093/nar/gkv554

By:

Shimin Le;
Mingxi Yao;
Jin Chen;
Artem K. Efremov;
Sara Azimi;
Jie Yan

Publication type:

Article

ATM-dependent phosphorylation of MRE11 controls extent of resection during homology directed repair by signalling through Exonuclease 1.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8352, doi. 10.1093/nar/gkv754

By:

Kijas, Amanda W.;
Yi Chieh Lim;
Bolderson, Emma;
Cerosaletti, Karen;
Gatei, Magtouf;
Jakob, Burkhard;
Tobias, Frank;
Taucher-Scholz, Gisela;
Gueven, Nuri;
Oakley, Greg;
Concannon, Patrick;
Wolvetang, Ernst;
Khanna, Kum Kum;
Wiesmüller, Lisa;
Lavin, Martin F.

Publication type:

Article

ChIP-seq reveals the global regulator AlgR mediating cyclic di-GMP synthesis in Pseudomonas aeruginosa.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8268, doi. 10.1093/nar/gkv747

By:

Weina Kong;
Jingru Zhao;
Huaping Kang;
Miao Zhu;
Tianhong Zhou;
Xin Deng;
Haihua Liang

Publication type:

Article

Splicing inhibition decreases phosphorylation level of Ser2 in Pol IICTD.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8258, doi. 10.1093/nar/gkv740

By:

Mitsunori Koga;
Megumi Hayashi;
Daisuke Kaida

Publication type:

Article

The interplay between DNA methylation and sequence divergence in recent human evolution.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8204, doi. 10.1093/nar/gkv693

By:

Hernando-Herraez, Irene;
Heyn, Holger;
Fernandez-Callejo, Marcos;
Vidal, Enrique;
Fernandez-Bellon, Hugo;
Prado-Martinez, Javier;
Sharp, Andrew J.;
Esteller, Manel;
Marques-Bonet, Tomas

Publication type:

Article

Involvement of SRSF11 in cell cycle-specific recruitment of telomerase to telomeres at nuclear speckles.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8435, doi. 10.1093/nar/gkv844

By:

Ji Hoon Lee;
Sun Ah Jeong;
Prabhat Khadka;
Juyeong Hong;
In Kwon Chung

Publication type:

Article

ZNF555 protein binds to transcriptional activator site of 4qA allele and ANT1: potential implication in Facioscapulohumeral dystrophy.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8227, doi. 10.1093/nar/gkv721

By:

Kim, Elena;
Rich, Jeremy;
Karoutas, Adam;
Tarlykov, Pavel;
Cochet, Emilie;
Malysheva, Daria;
Mamchaoui, Kamel;
Ogryzko, Vasily;
Pirozhkova, Iryna

Publication type:

Article

MINT: software to identify motifs and short-range interactions in trajectories of nucleic acids.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 1, doi. 10.1093/nar/gkv559

By:

Górska, Anna;
Jasiński, Maciej;
Trylska, Joanna

Publication type:

Article

The conserved 3'X terminal domain of hepatitis C virus genomic RNA forms a two-stem structure that promotes viral RNA dimerization.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8529, doi. 10.1093/nar/gkv786

By:

Cantero-Camacho, Ángel;
Gallego, José

Publication type:

Article

Cis-acting signals modulate the efficiency of programmed DNA elimination in Paramecium tetraurelia.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8157, doi. 10.1093/nar/gkv843

By:

Ferro, Diana;
Lepennetier, Gildas;
Catania, Francesco

Publication type:

Article

Competitive interaction of monovalent cations with DNA from 3D-RISM.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8405, doi. 10.1093/nar/gkv830

By:

Giambaşu, George M.;
Gebala, Magdalena K.;
Panteva, Maria T.;
Luchko, Tyler;
Case, David A.;
York, Darrin M.

Publication type:

Article

Chromosomal position shift of a regulatory gene alters the bacterial phenotype.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8215, doi. 10.1093/nar/gkv709

By:

Gerganova, Veneta;
Berger, Michael;
Zaldastanishvili, Elisabed;
Sobetzko, Patrick;
Lafon, Corinne;
Mourez, Michael;
Travers, Andrew;
Muskhelishvili, Georgi

Publication type:

Article

Tailor: a computational framework for detecting non-templated tailing of small silencing RNAs.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 1, doi. 10.1093/nar/gkv537

By:

Min-Te Chou;
Bo W. Han;
Chiung-Po Hsiao;
Zamore, Phillip D.;
Zhiping Weng;
Jui-Hung Hung

Publication type:

Article

The RNA-binding protein HOS5 and serine/arginine-rich proteins RS40 and RS41 participate in miRNA biogenesis in Arabidopsis.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8283, doi. 10.1093/nar/gkv751

By:

Tao Chen;
Peng Cui;
Liming Xiong

Publication type:

Article

Structural basis for DNA strand separation by a hexameric replicative helicase.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8551, doi. 10.1093/nar/gkv778

By:

Chaban, Yuriy;
Stead, Jonathan A.;
Ryzhenkova, Ksenia;
Whelan, Fiona;
Lamber, Ekaterina P.;
Antson, Alfred;
Sanders, Cyril M.;
Orlova, Elena V.

Publication type:

Article

Post-transcriptional gene silencing triggered by sense transgenes involves uncapped antisense RNA and differs from silencing intentionally triggered by antisense transgenes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8464, doi. 10.1093/nar/gkv753

By:

Parent, Jean-Sébastien;
Jauvion, Vincent;
Bouché, Nicolas;
Béclin, Christophe;
Hachet, Mélanie;
Zytnicki, Matthias;
Vaucheret, Hervé

Publication type:

Article

Solution structure of a DNA quadruplex containing ALS and FTD related GGGGCC repeat stabilized by 8-bromodeoxyguanosine substitution.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8590, doi. 10.1093/nar/gkv815

By:

Brčić, Jasna;
Plavec, Janez

Publication type:

Article

Structure and primase-mediated activation of a bacterial dodecameric replicative helicase.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8564, doi. 10.1093/nar/gkv792

By:

Bazin, Alexandre;
Cherrier, Mickaël V.;
Gutsche, Irina;
Timmins, Joanna;
Terradot, Laurent

Publication type:

Article

DNA polymerases κ and ζ cooperatively perform mutagenic translesion synthesis of the C8-2'-deoxyguanosine adduct of the dietary mutagen IQ in human cells.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8340, doi. 10.1093/nar/gkv750

By:

Bose, Arindam;
Pande, Paritosh;
Jasti, Vijay P.;
Millsap, Amy D.;
Hawkins, Edward K.;
Rizzo, Carmelo J.;
Basu, Ashis K.

Publication type:

Article

In vivo detection and replication studies of α-anomeric lesions of 2'-deoxyribonucleosides.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8314, doi. 10.1093/nar/gkv725

By:

Amato, Nicholas J.;
Zhai, Qianqian;
Navarro, Diana C.;
Niedernhofer, Laura J.;
Yinsheng Wang

Publication type:

Article