Works matching IS 03051048 AND DT 2015 AND VI 43 AND IP 16

Results: 42

Functional significance of protein assemblies predicted by the crystal structure of the restriction endonuclease BsaWI.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 8100, doi. 10.1093/nar/gkv768

By:

Tamulaitis, Gintautas;
Rutkauskas, Marius;
Zaremba, Mindaugas;
Grazulis, Saulius;
Tamulaitiene, Giedre;
Siksnys, Virginijus

Publication type:

Article

Reassignment of a rare sense codon to a non-canonical amino acid in Escherichia coli.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 8111, doi. 10.1093/nar/gkv787

By:

Takahito Mukai;
Atsushi Yamaguchi;
Kazumasa Ohtake;
Mihoko Takahashi;
Akiko Hayashi;
Fumie Iraha;
Tatsuo Yanagisawa;
Shigeyuki Yokoyama;
Hiroko Hoshi;
Takatsugu Kobayashi;
Kensaku Sakamoto

Publication type:

Article

Nucleotide binding interactions modulate dNTP selectivity and facilitate 8-oxo-dGTP incorporation by DNA polymerase lambda.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 8089, doi. 10.1093/nar/gkv760

By:

Burak, Matthew J.;
Guja, Kip E.;
Garcia-Diaz, Miguel

Publication type:

Article

The La-related protein 1-specific domain repurposes HEAT-like repeats to directly bind a 5′TOP sequence.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 8077, doi. 10.1093/nar/gkv748

By:

Lahr, Roni M.;
Mack, Seshat M.;
Héroux, Annie;
Blagden, Sarah P.;
Bousquet-Antonelli, Cécile;
Deragon, Jean-Marc;
Berman, Andrea J.

Publication type:

Article

Linkage of catalysis and 5′ end recognition in ribonuclease RNase J.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 8066, doi. 10.1093/nar/gkv732

By:

Xue-Yuan Pei;
Bralley, Patricia;
Jones, George H.;
Luisi, Ben F.

Publication type:

Article

Origin-of-transfer sequences facilitate mobilisation of non-conjugative antimicrobial-resistance plasmids in Staphylococcus aureus.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 7971, doi. 10.1093/nar/gkv755

By:

O'Brien, Frances G.;
Karina Yui Eto;
Murphy, Riley J. T.;
Fairhurst, Heather M.;
Coombs, Geoffrey W.;
Grubb, Warren B.;
Ramsay, Joshua P.

Publication type:

Article

Altered expression and editing of miRNA-100 regulates iTreg differentiation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 8057, doi. 10.1093/nar/gkv752

By:

Negi, Vinny;
Paul, Deepanjan;
Das, Sudipta;
Bajpai, Prashant;
Singh, Suchita;
Mukhopadhyay, Arijit;
Agrawal, Anurag;
Ghosh, Balaram

Publication type:

Article

A design principle for a single-stranded RNA genome that replicates with less double-strand formation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 8033, doi. 10.1093/nar/gkv742

By:

Kimihito Usui;
Norikazu Ichihashi;
Tetsuya Yomo

Publication type:

Article

Novel insights into RNP granules by employing the trypanosome's microtubule skeleton as a molecular sieve.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 8013, doi. 10.1093/nar/gkv731

By:

Fritz, Melanie;
Vanselow, Jens;
Sauer, Nadja;
Lamer, Stephanie;
Goos, Carina;
Siegel, T. Nicolai;
Subota, Ines;
Schlosser, Andreas;
Carrington, Mark;
Kramer, Susanne

Publication type:

Article

Molecular basis of ribosome recognition and mRNA hydrolysis by the E. coli YafQ toxin.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 8002, doi. 10.1093/nar/gkv791

By:

Maehigashi, Tatsuya;
Ruangprasert, Ajchareeya;
Miles, Stacey J.;
Dunham, Christine M.

Publication type:

Article

Identification of siRNA delivery enhancers by a chemical library screen.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 7984, doi. 10.1093/nar/gkv762

By:

Gilleron, Jerome;
Paramasivam, Prasath;
Zeigerer, Anja;
Querbes, William;
Marsico, Giovanni;
Andree, Cordula;
Seifert, Sarah;
Amaya, Pablo;
Stöter, Martin;
Koteliansky, Victor;
Waldmann, Herbert;
Fitzgerald, Kevin;
Kalaidzidis, Yannis;
Akinc, Akin;
Maier, Martin A.;
Manoharan, Muthiah;
Bickle, Marc;
Zerial, Marino

Publication type:

Article

Towards a comprehensive picture of alloacceptor tRNA remolding in metazoan mitochondrial genomes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 8044, doi. 10.1093/nar/gkv746

By:

Sahyoun, Abdullah H.;
Hölzer, Martin;
Jühling, Frank;
zu Siederdissen, Christian Höner;
Al-Arab, Marwa;
Tout, Kifah;
Marz, Manja;
Middendorf, Martin;
Stadler, Peter F.;
Bernt, Matthias

Publication type:

Article

G-quadruplex formation in double strand DNA probed by NMM and CV fluorescence.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 7961, doi. 10.1093/nar/gkv749

By:

Kreig, Alex;
Calvert, Jacob;
Sanoica, Janet;
Cullum, Emily;
Tipanna, Ramreddy;
Sua Myong

Publication type:

Article

SUMOylation at K<sup>707</sup> of DGCR8 controls direct function of primary microRNA.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 7945, doi. 10.1093/nar/gkv741

By:

Changhong Zhu;
Cheng Chen;
Jian Huang;
Hailong Zhang;
Xian Zhao;
Rong Deng;
Jinzhuo Dou;
Hui Jin;
Ran Chen;
Ming Xu;
Qin Chen;
Yanli Wang;
Jianxiu Yu

Publication type:

Article

SETDB1, HP1 and SUV39 promote repositioning of 53BP1 to extend resection during homologous recombination in G2 cells.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 7931, doi. 10.1093/nar/gkv722

By:

Alagoz, Meryem;
Yoko Katsuki;
Hideaki Ogiwara;
Tomoo Ogi;
Atsushi Shibata;
Kakarougkas, Andreas;
Jeggo, Penny

Publication type:

Article

Processing by MRE11 is involved in the sensitivity of subtelomeric regions to DNA double-strand breaks.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 7911, doi. 10.1093/nar/gkv714

By:

Keiko Muraki;
Limei Han;
Miller, Douglas;
Murnane, John P.

Publication type:

Article

Different types of interaction between PCNA and PIP boxes contribute to distinct cellular functions of Y-family DNA polymerases.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 7898, doi. 10.1093/nar/gkv712

By:

Yuji Masuda;
Rie Kanao;
Kentaro Kaji;
Haruo Ohmori;
Fumio Hanaoka;
Chikahide Masutani

Publication type:

Article

The Saccharomyces cerevisiae Dna2 can function as a sole nuclease in the processing of Okazaki fragments in DNA replication.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 7888, doi. 10.1093/nar/gkv710

By:

Levikova, Maryna;
Cejka, Petr

Publication type:

Article

Acetylation-dependent function of human single-stranded DNA binding protein 1.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 7878, doi. 10.1093/nar/gkv707

By:

Yuanzhong Wu;
Hongxia Chen;
Jinping Lu;
Meifang Zhang;
Ruhua Zhang;
Tingmei Duan;
Xin Wang;
Jun Huang;
Tiebang Kang

Publication type:

Article

Shaping the landscape of the Escherichia coli chromosome: replication-transcription encounters in cells with an ectopic replication origin.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 7865, doi. 10.1093/nar/gkv704

By:

Ivanova, Darja;
Taylor, Toni;
Smith, Sarah L.;
Dimude, Juachi U.;
Upton, Amy L.;
Mehrjouy, Mana M.;
Skovgaard, Ole;
Sherratt, David J.;
Retkute, Renata;
Rudolph, Christian J.

Publication type:

Article

Upregulating endogenous genes by an RNA-programmable artificial transactivator.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 7850, doi. 10.1093/nar/gkv682

By:

Fimiani, Cristina;
Goina, Elisa;
Mallamaci, Antonello

Publication type:

Article

DDB2 modulates TGF-β signal transduction in human ovarian cancer cells by downregulating NEDD4L.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 7838, doi. 10.1093/nar/gkv667

By:

Ran Zhao;
Tiantian Cui;
Chunhua Han;
Xiaoli Zhang;
Jinshan He;
Srivastava, Amit Kumar;
Jianhua Yu;
Wani, Altaf A.;
Qi-En Wang

Publication type:

Article

Sense and antisense transcription are associated with distinct chromatin architectures across genes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 7823, doi. 10.1093/nar/gkv666

By:

Murray, Struan C.;
Haenni, Simon;
Howe, Françoise S.;
Fischl, Harry;
Chocian, Karolina;
Nair, Anitha;
Mellor, Jane

Publication type:

Article

MicroRNA-29b/Tet1 regulatory axis epigenetically modulates mesendoderm differentiation in mouse embryonic stem cells.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 7805, doi. 10.1093/nar/gkv653

By:

Jiajie Tu;
Shuk Han Ng;
Shui Luk, Alfred Chun;
Jinyue Liao;
Xiaohua Jiang;
Bo Feng;
Lun Mak, Kingston King;
Rennert, Owen M.;
Wai-Yee Chan;
Tin-Lap Lee

Publication type:

Article

Transcriptional and post-transcriptional control of adipocyte differentiation by Jumonji domain-containing protein 6.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 7790, doi. 10.1093/nar/gkv645

By:

Yu-Jie Hu;
Belaghzal, Houda;
Wen-Yu Hsiao;
Jun Qi;
Bradner, James E.;
Guertin, David A.;
Sif, Saïd;
Imbalzano, Anthony N.

Publication type:

Article

Integrated analysis of numerous heterogeneous gene expression profiles for detecting robust disease-specific biomarkers and proposing drug targets.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 7779, doi. 10.1093/nar/gkv810

By:

Amar, David;
Hait, Tom;
Izraeli, Shai;
Shamir, Ron

Publication type:

Article

Free energy landscape and transition pathways from Watson-Crick to Hoogsteen base pairing in free duplex DNA.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 7769, doi. 10.1093/nar/gkv796

By:

Changwon Yang;
Eunae Kim;
Youngshang Pak

Publication type:

Article

High speed BLASTN: an accelerated MegaBLAST search tool.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 7762, doi. 10.1093/nar/gkv784

By:

Ying Chen;
Weicai Ye;
Yongdong Zhang;
Yuesheng Xu

Publication type:

Article

Revisiting the structure/function relationships of H/ACA(-like) RNAs: a unified model for Euryarchaea and Crenarchaea.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 7744, doi. 10.1093/nar/gkv756

By:

Toffano-Nioche, Claire;
Gautheret, Daniel;
Leclerc, Fabrice

Publication type:

Article

Complex long-distance effects of mutations that confer linezolid resistance in the large ribosomal subunit.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 7731, doi. 10.1093/nar/gkv729

By:

Fulle, Simone;
Saini, Jagmohan S.;
Homeyer, Nadine;
Gohlke, Holger

Publication type:

Article

Crosslinking reactions of 4-amino-6-oxo-2-vinylpyrimidine with guanine derivatives and structural analysis of the adducts.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 7717, doi. 10.1093/nar/gkv797

By:

Shuhei Kusano;
Shogo Ishiyama;
Sik Lok Lam;
Tsukasa Mashima;
Masato Katahira;
Kengo Miyamoto;
Misako Aida;
Fumi Nagatsugi

Publication type:

Article

Site specific replacements of a single loop nucleoside with a dibenzyl linker may switch the activity of TBA from anticoagulant to antiproliferative.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 7702, doi. 10.1093/nar/gkv789

By:

Scuotto, Maria;
Rivieccio, Elisa;
Varone, Alessia;
Corda, Daniela;
Bucci, Mariarosaria;
Vellecco, Valentina;
Cirino, Giuseppe;
Virgilio, Antonella;
Esposito, Veronica;
Galeone, Aldo;
Borbone, Nicola;
Varra, Michela;
Mayol, Luciano

Publication type:

Article

Agonistic aptamer to the insulin receptor leads to biased signaling and functional selectivity through allosteric modulation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 7688, doi. 10.1093/nar/gkv767

By:

Na-Oh Yunn;
Ara Koh;
Seungmin Han;
Jong Hun Lim;
Sehoon Park;
Jiyoun Lee;
Eui Kim;
ung Key Jang;
Per-Olof Berggren;
Sung Ho Ryu

Publication type:

Article

BatAlign: an incremental method for accurate alignment of sequencing reads.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 1, doi. 10.1093/nar/gkv533

By:

Jing-Quan Lim;
Tennakoon, Chandana;
Peiyong Guan;
Wing-Kin Sung

Publication type:

Article

Thermodynamic insights into 2-thiouridine-enhanced RNA hybridization.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 7675, doi. 10.1093/nar/gkv761

By:

Larsen, Aaron T.;
Fahrenbach, Albert C.;
Jia Sheng;
Pian, Julia;
Szostak, Jack W.

Publication type:

Article

Editorial: Alfred Pingoud (1945-2015).

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 7661, doi. 10.1093/nar/gkv846

By:

Jeltsch, Albert;
Wende, Wolfgang;
Friedhoff, Peter;
Stoddard, Barry L.

Publication type:

Article

Heterologous protein production using euchromatin-containing expression vectors in mammalian cells.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 1, doi. 10.1093/nar/gkv475

By:

Zboray, Katalin;
Sommeregger, Wolfgang;
Bogner, Edith;
Gili, Andreas;
Sterovsky, Thomas;
Fauland, Katharina;
Grabner, Beatrice;
Stiedl, Patricia;
Moll, Herwig P.;
Bauer, Anton;
Kunert, Renate;
Casanova, Emilio

Publication type:

Article

Frequency-based haplotype reconstruction from deep sequencing data of bacterial populations.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 1, doi. 10.1093/nar/gkv478

By:

Pulido-Tamayo, Sergio;
Sánchez-Rodríguez, Aminael;
Toon Swings;
Van den Bergh, Bram;
Dubey, Akanksha;
Steenackers, Hans;
Michiels, Jan;
Fostier, Jan;
Marchal, Kathleen

Publication type:

Article

Removing unwanted variation in a differential methylation analysis of Illumina HumanMethylation450 array data.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 1, doi. 10.1093/nar/gkv526

By:

Maksimovic, Jovana;
Gagnon-Bartsch, Johann A.;
Speed, Terence P.;
Oshlack, Alicia

Publication type:

Article

How data analysis affects power, reproducibility and biological insight of RNA-seq studies in complex datasets.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 7664, doi. 10.1093/nar/gkv736

By:

Peixoto, Lucia;
Risso, Davide;
Poplawski, Shane G.;
Wimmer, Mathieu E.;
Speed, Terence P.;
Wood, Marcelo A.;
Abel, Ted

Publication type:

Article

Single cell measurement of telomerase expression and splicing using microfluidic emulsion cultures.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 1, doi. 10.1093/nar/gkv477

By:

Novak, Richard;
Hart, Kristina;
Mathies, Richard A.

Publication type:

Article

A low-latency, big database system and browser for storage, querying and visualization of 3D genomic data.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 16, p. 1, doi. 10.1093/nar/gkv476

By:

Butyaev, Alexander;
Mavlyutov, Ruslan;
Blanchette, Mathieu;
Cudré-Mauroux, Philippe;
Waldispüh, Jérôme

Publication type:

Article