Works matching IS 03051048 AND DT 2015 AND VI 43 AND IP 15

Results: 45

Identifying novel sequence variants of RNA 3D motifs.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7504, doi. 10.1093/nar/gkv651

By:

Zirbel, Craig L.;
Roll, James;
Sweeney, Blake A.;
Petrov, Anton I.;
Pirrung, Meg;
Leontis, Neocles B.

Publication type:

Article

Mediator tail subunits can form amyloid-like aggregates in vivoand affect stress response in yeast.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7306, doi. 10.1093/nar/gkv629

By:

Xuefeng Zhu;
Lihua Chen;
Carlsten, Jonas O. P.;
Qian Liu;
Junsheng Yang;
Beidong Liu;
Gustafsson, Claes M.

Publication type:

Article

UV induced ubiquitination of the yeast Rad4-Rad23 complex promotes survival by regulating cellular dNTP pools.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7360, doi. 10.1093/nar/gkv680

By:

Zheng Zhou;
Humphryes, Neil;
van Eijk, Patrick;
Waters, Raymond;
Shirong Yu;
Kraehenbuehl, Rolf;
Hartsuiker, Edgar;
Reed, Simon H.

Publication type:

Article

Decoupling of divergent gene regulation by sequence-specific DNA binding factors.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7292, doi. 10.1093/nar/gkv618

By:

Chao Yan;
Daoyong Zhang;
Raygoza Garay, Juan Antonio;
Mwangi, Michael M.;
Lu Bai

Publication type:

Article

Improved prediction of RNA secondary structure by integrating the free energy model with restraints derived from experimental probing data.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7247, doi. 10.1093/nar/gkv706

By:

Yang Wu;
Binbin Shi;
Xinqiang Ding;
Tong Liu;
Xihao Hu;
Yip, Kevin Y.;
Zheng Rong Yang;
Mathews, David H.;
Zhi John Lu

Publication type:

Article

Nucleic acid-binding specificity of human FUS protein.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7535, doi. 10.1093/nar/gkv679

By:

Xueyin Wang;
Schwartz, Jacob C.;
Cech, Thomas R.

Publication type:

Article

Structural heterogeneity and functional diversity of topologically associating domains in mammalian genomes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7237, doi. 10.1093/nar/gkv684

By:

Xiao-Tao Wang;
Peng-Fei Dong;
Hong-Yu Zhang;
Cheng Peng

Publication type:

Article

RefSeq curation and annotation of antizyme and antizyme inhibitor genes in vertebrates.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7270, doi. 10.1093/nar/gkv713

By:

Rajput, Bhanu;
Murphy, Terence D.;
Pruitt, Kim D.

Publication type:

Article

Generation of supercoils in nicked and gapped DNA drives DNA unknotting and postreplicative decatenation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7229, doi. 10.1093/nar/gkv683

By:

Racko, Dusan;
Benedetti, Fabrizio;
Dorier, Julien;
Burnier, Yannis;
Stasiak, Andrzej

Publication type:

Article

Elastic network models for RNA: a comparative assessment with molecular dynamics and SHAPE experiments.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7260, doi. 10.1093/nar/gkv708

By:

Pinamonti, Giovanni;
Bottaro, Sandro;
Micheletti, Cristian;
Bussi, Giovanni

Publication type:

Article

The unusual and dynamic character of PX-DNA.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7201, doi. 10.1093/nar/gkv739

By:

Dong Niu;
Hualin Jiang;
Ruojie Sha;
Canary, James W.;
Seeman, Nadrian C.

Publication type:

Article

RAX2: a genome-wide detection method of condition-associated transcription variation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 1, doi. 10.1093/nar/gkv411

By:

Yuan-De Tan;
Jixin Deng;
Neilson, Joel R.

Publication type:

Article

Ty1 retrovirus-like element Gag contains overlapping restrictions factor and nucleic acid chaperone functions.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7414, doi. 10.1093/nar/gkv695

By:

Nishida, Yuri;
Pachulska-Wieczorek, Katarzyna;
Błaszczyk, Leszek;
Saha, Agniva;
Gumna, Julita;
Garfinkel, David J.;
Purzycka, Katarzyna J.

Publication type:

Article

Haploinsufficiency predictions without study bias.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 1, doi. 10.1093/nar/gkv474

By:

Steinberg, Julia;
Honti, Frantisek;
Meader, Stephen;
Webber, Caleb

Publication type:

Article

Importin-ß facilitates nuclear import of human GW proteins and balances cytoplasmic gene silencing protein levels.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7447, doi. 10.1093/nar/gkv705

By:

Schraivogel, Daniel;
Schindler, Susann G.;
Danner, Johannes;
Kremmer, Elisabeth;
Pfaff, Janina;
Hannus, Stefan;
Depping, Reinhard;
Meister, Gunter

Publication type:

Article

Genome wide interactions of wild-type and activator bypass forms of σ54.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7280, doi. 10.1093/nar/gkv597

By:

Schaefer, Jorrit;
Engl, Christoph;
Nan Zhang;
Lawton, Edward;
Buck, Martin

Publication type:

Article

EXO1 is critical for embryogenesis and the DNA damage response in mice with a hypomorphic Nbs1 allele.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7371, doi. 10.1093/nar/gkv691

By:

Rein, Katrin;
Yanez, Diana A.;
Terré, Berta;
Palenzuela, Lluís;
Aivio, Suvi;
Kaichun Wei;
Edelmann, Winfried;
Stark, Jeremy M.;
Stracker, Travis H.

Publication type:

Article

RNA aptamer inhibitors of a restriction endonuclease.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7544, doi. 10.1093/nar/gkv702

By:

Mondragón, Estefanía;
Maher III, L. James

Publication type:

Article

Transcription yield of fully 2'-modified RNA can be increased by the addition of thermostabilizing mutations to T7 RNA polymerase mutants.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7480, doi. 10.1093/nar/gkv734

By:

Meyer, Adam J.;
Garry, Daniel J.;
Hall, Bradley;
Byrom, Michelle M.;
McDonald, Hannah G.;
Xu Yang;
Yin, Y. Whitney;
Ellington, Andrew D.

Publication type:

Article

On the availability of microRNA-induced silencing complexes, saturation of microRNA-binding sites and stoichiometry.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7556, doi. 10.1093/nar/gkv720

By:

Mayya, Vinay K.;
Duchaine, Thomas F.

Publication type:

Article

Xylonucleic acid: synthesis, structure, and orthogonal pairing properties.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7189, doi. 10.1093/nar/gkv719

By:

Maiti, Mohitosh;
Maiti, Munmun;
Knies, Christine;
Dumbre, Shrinivas;
Lescrinier, Eveline;
Rosemeyer, Helmut;
Ceulemans, Arnout;
Herdewijn, Piet

Publication type:

Article

Two separable functions of Ctp1 in the early steps of meiotic DNA double-strand break repair.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7349, doi. 10.1093/nar/gkv644

By:

Lijuan Ma;
Milman, Neta;
Nambiar, Mridula;
Smith, Gerald R.

Publication type:

Article

Identification of human telomerase assembly inhibitors enabled by a novel method to produce hTERT.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 1, doi. 10.1093/nar/gkv425

By:

Kellermann, Guillaume;
Kaiser, Markus;
Dingli, Florent;
Lahuna, Olivier;
Naud-Martin, Delphine;
Mahuteau-Betzer, Florence;
Loew, Damarys;
Ségal-Bendirdjian, Evelyne;
Teulade-Fichou, Marie-Paule;
Bombard, Sophie

Publication type:

Article

Integrative genomic analysis in K562 chronic myelogenous leukemia cells reveals that proximal NCOR1 binding positively regulates genes that govern erythroid differentiation and Imatinib sensitivity.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7330, doi. 10.1093/nar/gkv642

By:

Long, Mark D.;
van den Berg, Patrick R.;
Russell, James L.;
Singh, Prashant K.;
Battaglia, Sebastiano;
Campbell, Moray J.

Publication type:

Article

tRNA recognition by a bacterial tRNA Xm32 modification enzyme from the SPOUT methyltransferase superfamily.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7489, doi. 10.1093/nar/gkv745

By:

Ru-Juan Liu;
Tao Long;
Mi Zhou;
Xiao-Long Zhou;
En-Duo Wang

Publication type:

Article

Structural and functional studies of the Mycobacterium tuberculosisVapBC30 toxin-antitoxin system: implications for the design of novel antimicrobial peptides.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7624, doi. 10.1093/nar/gkv689

By:

In-Gyun Lee;
Sang Jae Lee;
Susanna Chae;
Ki-Young Lee;
Ji-Hun Kim;
Bong-Jin Lee

Publication type:

Article

ΔNp63 intronic miR-944 is implicated in the ΔNp63-mediated induction of epidermal differentiation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7462, doi. 10.1093/nar/gkv735

By:

Kyu-Han Kim;
Eun-Gyung Cho;
Seok Jong Yu;
Hyojin Kang;
Yoon-Jin Kim;
Sang Hoon Kim;
Tae Ryong Lee

Publication type:

Article

Different motif requirements for the localization zipcode element of ß-actin mRNA binding by HuD and ZBP1.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7432, doi. 10.1093/nar/gkv699

By:

Hak Hee Kim;
Seung Joon Lee;
Gardiner, Amy S.;
Perrone-Bizzozero, Nora I.;
Soonmoon Yoo

Publication type:

Article

Why weight? Modelling sample and observational level variability improves power in RNA-seq analyses.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 1, doi. 10.1093/nar/gkv412

By:

Ruijie Liu;
Holik, Aliaksei Z.;
Shian Su;
Jansz, Natasha;
Kelan Chen;
Huei San Leong;
Blewitt, Marnie E.;
Asselin-Labat, Marie-Liesse;
Smyth, Gordon K.;
Ritchie, Matthew E.

Publication type:

Article

Destabilization of microRNAs in human cells by 3' deadenylation mediated by PARN and CUGBP1.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7521, doi. 10.1093/nar/gkv669

By:

Takayuki Katoh;
Hiroaki Hojo;
Tsutomu Suzuki

Publication type:

Article

Role of the central cations in the mechanical unfolding of DNA and RNA G-quadruplexes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7638, doi. 10.1093/nar/gkv690

By:

Bergues-Pupo, Ana Elisa;
Arias-Gonzalez, J. Ricardo;
Morón, María Carmen;
Fiasconaro, Alessandro;
Falo, Fernando

Publication type:

Article

SUV3 helicase is required for correct processing of mitochondrial transcripts.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7398, doi. 10.1093/nar/gkv692

By:

Clemente, Paula;
Pajak, Aleksandra;
Laine, Isabelle;
Wibom, Rolf;
Wedell, Anna;
Freyer, Christoph;
Wredenberg, Anna

Publication type:

Article

Structural basis of the mercury(II)-mediated conformational switching of the dual-function transcriptional regulator MerR.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7612, doi. 10.1093/nar/gkv681

By:

Chih-Chiang Chang;
Li-Ying Lin;
Xiao-Wei Zou;
Chieh-Chen Huang;
Nei-Li Chan

Publication type:

Article

Efficient exploration of pan-cancer networks by generalized covariance selection and interactive web content.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 1, doi. 10.1093/nar/gkv413

By:

Kling, Teresia;
Johansson, Patrik;
Sanchez, José;
Marinescu, Voichita D.;
Jörnsten, Rebecka;
Nelander, Sven

Publication type:

Article

Adenine versus guanine DNA adducts of aristolochic acids: role of the carcinogen--purine linkage in the differential global genomic repair propensity.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7388, doi. 10.1093/nar/gkv701

By:

Kathuria, Preetleen;
Sharma, Purshotam;
Wetmore, Stacey D.

Publication type:

Article

Synthetic biosensors for precise gene control and real-time monitoring of metabolites.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7648, doi. 10.1093/nar/gkv616

By:

Rogers, Jameson K.;
Guzman, Christopher D.;
Taylor, Noah D.;
Raman, Srivatsan;
Anderson, Kelley;
Church, George M.

Publication type:

Article

Longitudinal epigenetic and gene expression profiles analyzed by three-component analysis reveal down-regulation of genes involved in protein translation in human aging.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 1, doi. 10.1093/nar/gkv473

By:

Jung, Marc;
Seung-Gi Jin;
Xiaoying Zhang;
Wenying Xiong;
Gogoshin, Grigoriy;
Rodin, Andrei S.;
Pfeifer, Gerd P.

Publication type:

Article

FDF-PAGE: a powerful technique revealing previously undetected small RNAs sequestered by complementary transcripts.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7590, doi. 10.1093/nar/gkv604

By:

Harris, C. Jake;
Molnar, Attila;
Müller, Sebastian Y.;
Baulcombe, David C.

Publication type:

Article

Bacteriophage GIL01 gp7 interacts with host LexA repressor to enhance DNA binding and inhibit RecA-mediated auto-cleavage.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7315, doi. 10.1093/nar/gkv634

By:

Fornelos, Nadine;
Butala, Matej;
Hodnik, Vesna;
Anderluh, Gregor;
Bamford, Jaana K.;
Salas, Margarita

Publication type:

Article

A network of SMG-8, SMG-9 and SMG-1 C-terminal insertion domain regulates UPF1 substrate recruitment and phosphorylation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7600, doi. 10.1093/nar/gkv668

By:

Deniaud, Aurélien;
Karuppasamy, Manikandan;
Bock, Thomas;
Masiulis, Simonas;
Huard, Karine;
Garzoni, Frédéric;
Kerschgens, Kathrin;
Hentze, Matthias W.;
Kulozik, Andreas E.;
Beck, Martin;
Neu-Yilik, Gabriele;
Schaffitzel, Christiane

Publication type:

Article

The microRNA-183 cluster: the family that plays together stays together.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7173, doi. 10.1093/nar/gkv703

By:

Dambal, Shweta;
Shah, Mit;
Mihelich, Brittany;
Nonn, Larisa

Publication type:

Article

ROCK inhibition enhances microRNA function by promoting deadenylation of targeted mRNAs via increasing PAIP2 expression.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7577, doi. 10.1093/nar/gkv728

By:

Takeshi Yoshikawa;
Jianfeng Wu;
Motoyuki Otsuka;
Takahiro Kishikawa;
Motoko Ohno;
Chikako Shibata;
Akemi Takata;
Han, Felicia;
Young Jun Kang;
Chyi-Ying A. Chen;
Ann-Bin Shyu;
Jiahuai Han;
Kazuhiko Koike

Publication type:

Article

Dynamic profiling of double-stranded RNA binding proteins.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7566, doi. 10.1093/nar/gkv726

By:

Xinlei Wang;
Vukovic, Lela;
Hye Ran Koh;
Schulten, Klaus;
Sua Myong

Publication type:

Article

The missing indels: an estimate of indel variation in a human genome and analysis of factors that impede detection.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7217, doi. 10.1093/nar/gkv677

By:

Yue Jiang;
Turinsky, Andrei L.;
Brudno, Michael

Publication type:

Article

Accurate placement of substrate RNA by Gar1 in H/ACA RNA-guided pseudouridylation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 15, p. 7207, doi. 10.1093/nar/gkv757

By:

Peng Wang;
Lijiang Yang;
Yi Qin Gao;
Xin Sheng Zhao

Publication type:

Article