Works matching IS 03051048 AND DT 2015 AND VI 43 AND IP 14

Results: 48

Linking two DNA duplexes with a rigid linker for DNA nanotechnology.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6692, doi. 10.1093/nar/gkv662

By:

Ryu Tashiro;
Masahiro Iwamoto;
Hironobu Morinaga;
Tomoko Emura;
Kumi Hidaka;
Masayuki Endo;
Hiroshi Sugiyama

Publication type:

Article

Identification of in vivoDNA-binding mechanisms of Pax6 and reconstruction of Pax6-dependent gene regulatory networks during forebrain and lens development.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6827, doi. 10.1093/nar/gkv589

By:

Jian Sun;
Rockowitz, Shira;
Qing Xie;
Ashery-Padan, Ruth;
Deyou Zheng;
Cvekl, Ales

Publication type:

Article

Ribosomal protein L10(L12)4 autoregulates expression of the Bacillus subtilis rplJL operon by a transcription attenuation mechanism.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 7032, doi. 10.1093/nar/gkv628

By:

Yakhnin, Helen;
Yakhnin, Alexander V.;
Babitzke, Paul

Publication type:

Article

Site-specific labeling of RNA by combining genetic alphabet expansion transcription and copper-free click chemistry.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6665, doi. 10.1093/nar/gkv638

By:

Tatsuhiko Someya;
Ami Ando;
Michiko Kimoto;
Ichiro Hirao

Publication type:

Article

FKBP51 employs both scaffold and isomerase functions to promote NF-κB activation in melanoma.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6983, doi. 10.1093/nar/gkv615

By:

Romano, Simona;
Yichuan Xiao;
Mako Nakaya;
D'Angelillo, Anna;
Mikyoung Chang;
Jin Jin;
Hausch, Felix;
Masullo, Mariorosario;
Romano, Maria Fiammetta;
Shao-Cong Sun;
Xixi Feng

Publication type:

Article

Synthesis of 2-Fluoro RNA by Syn5 RNA polymerase.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 1, doi. 10.1093/nar/gkv367

By:

Bin Zhu;
Hernandez, Alfredo;
Min Tan;
Wollenhaupt, Jan;
Tabor, Stanley;
Richardson, Charles C.

Publication type:

Article

Corrigendum.

Published in:: Nucleic Acids Research, 2015, v. 43, n. 14, p. 7171, doi. 10.1093/nar/gkv673
Publication type:: Article

BreakSeek: a breakpoint-based algorithm for full spectral range INDEL detection.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6701, doi. 10.1093/nar/gkv605

By:

Hui Zhao;
Fangqing Zhao

Publication type:

Article

Complementing tissue characterization by integrating transcriptome profiling from the Human Protein Atlas and from the FANTOM5 consortium.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6787, doi. 10.1093/nar/gkv608

By:

Nancy Yiu-Lin Yu;
Hallström, Björn M.;
Fagerberg, Linn;
Ponten, Fredrik;
Kawaji, Hideya;
Carninci, Piero;
Forrest, Alistair R. R.;
Yoshihide Hayashizaki;
Uhlén, Mathias;
Daub, Carsten O.

Publication type:

Article

Thioflavin T as a fluorescence probe for monitoring RNA metabolism at molecular and cellular levels.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 1, doi. 10.1093/nar/gkv338

By:

Shinya Sugimoto;
Ken-ichi Arita-Morioka;
Yoshimitsu Mizunoe;
Kunitoshi Yamanaka;
Teru Ogura

Publication type:

Article

MiRBooking simulates the stoichiometric mode of action of microRNAs.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6730, doi. 10.1093/nar/gkv619

By:

Weill, Nathanaël;
Lisi, Véronique;
Scott, Nicolas;
Dallaire, Paul;
Pelloux, Julie;
Major, François

Publication type:

Article

Cosmetics-triggered percutaneous remote control of transgene expression in mice.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 1, doi. 10.1093/nar/gkv326

By:

Hui Wang;
Haifeng Ye;
Mingqi Xie;
Daoud El-Baba, Marie;
Fussenegger, Martin

Publication type:

Article

Allele-specific copy-number discovery from whole-genome and whole-exome sequencing.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 1, doi. 10.1093/nar/gkv319

By:

WeiBo Wang;
Wei Wang;
Wei Sun;
Crowley, James J.;
Szatkiewicz, Jin P.

Publication type:

Article

Microbial species delineation using whole genome sequences.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6761, doi. 10.1093/nar/gkv657

By:

Varghese, Neha J.;
Mukherjee, Supratim;
Ivanova, Natalia;
Konstantinidis, Konstantinos T.;
Mavrommatis, Kostas;
Kyrpides, Nikos C.;
Pati, Amrita

Publication type:

Article

The de-ubiquitylating enzymes USP26 and USP37 regulate homologous recombination by counteracting RAP80.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6919, doi. 10.1093/nar/gkv613

By:

Typas, Dimitris;
Luijsterburg, Martijn S.;
Wiegant, Wouter W.;
Diakatou, Michaela;
Helfricht, Angela;
Thijssen, Peter E.;
van de Broek, Bram;
Mullenders, Leon H.;
van Attikum, Haico

Publication type:

Article

Caffeine inhibits gene conversion by displacing Rad51 from ssDNA.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6902, doi. 10.1093/nar/gkv525

By:

Tsabar, Michael;
Mason, Jennifer M.;
Yuen-Ling Chan;
Bishop, Douglas K.;
Haber, James E.

Publication type:

Article

Caffeine impairs resection during DNA break repair by reducing the levels of nucleases Sae2 and Dna2.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6889, doi. 10.1093/nar/gkv520

By:

Tsabar, Michael;
Eapen, Vinay V.;
Mason, Jennifer M.;
Memisoglu, Gonen;
Waterman, David P.;
Long, Marcus J.;
Bishop, Douglas K.;
Haber, James E.

Publication type:

Article

A predictive biophysical model of translational coupling to coordinate and control protein expression in bacterial operons.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 7137, doi. 10.1093/nar/gkv635

By:

Tian Tian;
Salis, Howard M.

Publication type:

Article

Phosphorylation regulates the Star-PAP-PIPKIα interaction and directs specificity toward mRNA targets.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 7005, doi. 10.1093/nar/gkv676

By:

Mohan, Nimmy;
A. P., Sudheesh;
Francis, Nimmy;
Anderson, Richard;
Laishram, Rakesh S.

Publication type:

Article

Chemical intervention of the NM23-H2 transcriptional programme on c-MYCvia a novel small molecule.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6677, doi. 10.1093/nar/gkv641

By:

Chan Shan;
Jing Lin;
Jin-Qiang Hou;
Hui-Yun Liu;
Shuo-Bin Chen;
Ai-Chun Chen;
Tian-Miao Ou;
Jia-Heng Tan;
Ding Li;
Lian-Quan Gu;
Zhi-Shu Huang

Publication type:

Article

Structures of the T. bruceikRNA editing factor MRB1590 reveal unique RNA-binding pore motif contained within an ABC-ATPase fold.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 7096, doi. 10.1093/nar/gkv647

By:

Shaw, Porsha L. R.;
McAdams, Natalie M.;
Hast, Michael A.;
Ammerman, Michelle L.;
Read, Laurie K.;
Schumacher, Maria A.

Publication type:

Article

Transcription blockage by stable H-DNA analogs in vitro.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6994, doi. 10.1093/nar/gkv622

By:

Pandey, Shristi;
Ogloblina, Anna M.;
Belotserkovskii, Boris P.;
Dolinnaya, Nina G.;
Yakubovskaya, Marianna G.;
Mirkin, Sergei M.;
Hanawalt, Philip C.

Publication type:

Article

p27Kip1 and p21Cip1 collaborate in the regulation of transcription by recruiting cyclin-Cdk complexes on the promoters of target genes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6860, doi. 10.1093/nar/gkv593

By:

Orlando, Serena;
Gallastegui, Edurne;
Besson, Arnaud;
Abril, Gabriel;
Aligué, Rosa;
Pujol, Maria Jesus;
Bachs, Oriol

Publication type:

Article

TET1 is controlled by pluripotency-associated factors in ESCs and downmodulated by PRC2 in differentiated cells and tissues.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6814, doi. 10.1093/nar/gkv392

By:

Neri, Francesco;
Incarnato, Danny;
Krepelova, Anna;
Dettori, Daniela;
Rapelli, Stefania;
Maldotti, Mara;
Parlato, Caterina;
Anselmi, Francesca;
Galvagni, Federico;
Oliviero, Salvatore

Publication type:

Article

Redefining the transcriptional regulatory dynamics of classically and alternatively activated macrophages by deepCAGE transcriptomics.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6969, doi. 10.1093/nar/gkv646

By:

Roy, Sugata;
Schmeier, Sebastian;
Arner, Erik;
Alam, Tanvir;
Parihar, Suraj P.;
Ozturk, Mumin;
Tamgue, Ousman;
Hideya Kawaji;
de Hoon, Michiel J. L.;
Masayoshi Itoh;
Lassmann, Timo;
Carninci, Piero;
Yoshihide Hayashizaki;
Forrest, Alistair R. R.;
Bajic, Vladimir B.;
Guler, Reto;
Brombacher, Frank;
Harukazu Suzuki

Publication type:

Article

The structure of Rpf2-Rrs1 explains its role in ribosome biogenesis.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 7083, doi. 10.1093/nar/gkv640

By:

Kharde, Satyavati;
Calviño, Fabiola R.;
Gumiero, Andrea;
Wild, Klemens;
Sinning, Irmgard

Publication type:

Article

Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 7122, doi. 10.1093/nar/gkv654

By:

Ken-ichi Miyazono;
Sonoko Ishino;
Kanae Tsutsumi;
Tomoko Ito;
Yoshizumi Ishino;
Masaru Tanokura

Publication type:

Article

TP53 mutations, tetraploidy and homologous recombination repair defects in early stage high-grade serous ovarian cancer.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6945, doi. 10.1093/nar/gkv111

By:

Chien, Jeremy;
Sicotte, Hugues;
Jian-Bing Fan;
Humphray, Sean;
Cunningham, Julie M.;
Kalli, Kimberly R.;
Oberg, Ann L.;
Hart, Steven N.;
Ying Li;
Davila, Jaime I.;
Baheti, Saurabh;
Chen Wang;
Dietmann, Sabine;
Atkinson, Elizabeth J.;
Asmann, Yan W.;
Bell, Debra A.;
Takayo Ota;
Tarabishy, Yaman;
Rui Kuang;
Bibikova, Marina

Publication type:

Article

Human DNA ligase III bridges two DNA ends to promote specific intermolecular DNA end joining.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 7021, doi. 10.1093/nar/gkv652

By:

Kukshal, Vandna;
In-Kwon Kim;
Hura, Gregory L.;
Tomkinson, Alan E.;
Tainer, John A.;
Ellenberger, Tom

Publication type:

Article

Recovery of the poisoned topoisomerase II for DNA religation: coordinated motion of the cleavage core revealed with the microsecond atomistic simulation .

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6772, doi. 10.1093/nar/gkv672

By:

Nan-Lan Huang;
Jung-Hsin Lin

Publication type:

Article

Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 1, doi. 10.1093/nar/gkv303

By:

Locati, Mauro D.;
Terpstra, Inez;
de Leeuw, Wim C.;
Kuzak, Mateusz;
Rauwerda, Han;
Ensink, Wim A.;
van Leeuwen, Selina;
Nehrdich, Ulrike;
Spaink, Herman P.;
Jonker, Martijs J.;
Breit, Timo M.;
Dekker, Rob J.

Publication type:

Article

Characterization of ERM transactivation domain binding to the ACID/PTOV domain of the Mediator subunit MED25.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 7110, doi. 10.1093/nar/gkv650

By:

Landrieu, Isabelle;
Verger, Alexis;
Baert, Jean-Luc;
Rucktooa, Prakash;
Cantrelle, François-Xavier;
Dewitte, Frédérique;
Ferreira, Elisabeth;
Lens, Zoé;
Villeret, Vincent;
Monté, Didier

Publication type:

Article

The XRCC1 phosphate-binding pocket binds poly (ADP-ribose) and is required for XRCC1 function.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6934, doi. 10.1093/nar/gkv623

By:

Breslin, Claire;
Hornyak, Peter;
Ridley, Andrew;
Rulten, Stuart L.;
Hanzlikova, Hana;
Oliver, Antony W.;
Caldecott, Keith W.

Publication type:

Article

Chromatin and extracellular vesicle associated sperm RNAs.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6847, doi. 10.1093/nar/gkv591

By:

Johnson, Graham D.;
Mackie, Paula;
Jodar, Meritxell;
Moskovtsev, Sergey;
Krawetz, Stephen A.

Publication type:

Article

Primase-polymerases are a functionally diverse superfamily of replication and repair enzymes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6651, doi. 10.1093/nar/gkv625

By:

Guilliam, Thomas A.;
Keen, Benjamin A.;
Brissett, Nigel C.;
Doherty, Aidan J.

Publication type:

Article

The ancestor of modern Holozoa acquired the CCA-adding enzyme from Alphaproteobacteria by horizontal gene transfer.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6739, doi. 10.1093/nar/gkv631

By:

Betat, Heike;
Mede, Tobias;
Tretbar, Sandy;
Steiner, Lydia;
Stadler, Peter F.;
Mörl, Mario;
Prohaska, Sonja J.

Publication type:

Article

A new transcription factor for mitosis: in Schizosaccharomyces pombe, the RFX transcription factor Sak1 works with forkhead factors to regulate mitotic expression.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6874, doi. 10.1093/nar/gkv274

By:

Garg, Angad;
Futcher, Bruce;
Leatherwood, Janet

Publication type:

Article

Single-cell, locus-specific bisulfite sequencing (SLBS) for direct detection of epimutations in DNA methylation patterns.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 1, doi. 10.1093/nar/gkv366

By:

Gravina, Silvia;
Ganapathi, Shireen;
Vijg, Jan

Publication type:

Article

Tight regulation of plant immune responses by combining promoter and suicide exon elements.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 7152, doi. 10.1093/nar/gkv655

By:

Gonzalez, Tania L.;
Yan Liang;
Nguyen, Bao N.;
Staskawicz, Brian J.;
Loqué, Dominique;
Hammond, Ming C.

Publication type:

Article

Dynamic contact network between ribosomal subunits enables rapid large-scale rotation during spontaneous translocation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6747, doi. 10.1093/nar/gkv649

By:

Bock, Lars V.;
Blau, Christian;
Vaiana, Andrea C.;
Grubmüller, Helmut

Publication type:

Article

Transcriptomic profiling of gene expression and RNA processing during Leishmania major differentiation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6799, doi. 10.1093/nar/gkv656

By:

Dillon, Laura A. L.;
Okrah, Kwame;
Hughitt, V. Keith;
Suresh, Rahul;
Yuan Li;
Fernandes, Maria Cecilia;
Belew, A. Trey;
Bravo, Hector Corrada;
Mosser, David M.;
El-Sayed, Najib M.

Publication type:

Article

An atlas of RNA base pairs involving modified nucleobases with optimal geometries and accurate energies.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6714, doi. 10.1093/nar/gkv606

By:

Chawla, Mohit;
Oliva, Romina;
Bujnicki, Janusz M.;
Cavallo, Luigi

Publication type:

Article

A fungicide-responsive kinase as a tool for synthetic cell fate regulation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 7162, doi. 10.1093/nar/gkv678

By:

Furukawa, Kentaro;
Hohmann, Stefan

Publication type:

Article

Dissecting the nascent human transcriptome by analysing the RNA content of transcription factories.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 1, doi. 10.1093/nar/gkv390

By:

Caudron-Herger, Maïwen;
Cook, Peter R.;
Rippe, Karsten;
Papantonis, Argyris

Publication type:

Article

CTNNBL1 facilitates the association of CWC15 with CDC5L and is required to maintain the abundance of the Prp19 spliceosomal complex.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 7058, doi. 10.1093/nar/gkv643

By:

van Maldegem, Febe;
Maslen, Sarah;
Johnson, Christopher M.;
Chandra, Anita;
Ganesh, Karuna;
Skehel, Mark;
Rada, Cristina

Publication type:

Article

Evidence that avian reovirus σNS is an RNA chaperone: implications for genome segment assortment.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 7044, doi. 10.1093/nar/gkv639

By:

Borodavka, Alexander;
Ault, James;
Stockley, Peter G.;
Tuma, Roman

Publication type:

Article

In vitro evolution of distinct self-cleaving ribozymes in diverse environments.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 7070, doi. 10.1093/nar/gkv648

By:

Popović, Milena;
Fliss, Palmer S.;
Ditzler, Mark A.

Publication type:

Article

Active promoters give rise to false positive 'Phantom Peaks' in ChIP-seq experiments.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6959, doi. 10.1093/nar/gkv637

By:

Jain, Dhawal;
Baldi, Sandro;
Zabel, Angelika;
Straub, Tobias;
Becker, Peter B.

Publication type:

Article