Works matching IS 03051048 AND DT 2015 AND VI 43 AND IP 12

Results: 46

Small RNA-mediated DNA (cytosine-5) methyltransferase 1 inhibition leads to aberrant DNA methylation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 6112, doi. 10.1093/nar/gkv518

By:

Guoqiang Zhang;
Estève, Pierre-Olivier;
Hang Gyeong Chin;
Terragni, Jolyon;
Nan Dai;
Correa Jr., Ivan R.;
Pradhan, Sriharsa

Publication type:

Article

Multivalent ion-mediated nucleic acid helix-helix interactions: RNA versus DNA.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 6156, doi. 10.1093/nar/gkv570

By:

Yuan-Yan Wu;
Zhong-Liang Zhang;
Jin-Si Zhang;
Xiao-Long Zhu;
Zhi-Jie Tan

Publication type:

Article

Genome-wide promoter binding profiling of protein phosphatase-1 and its major nuclear targeting subunits.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 5771, doi. 10.1093/nar/gkv500

By:

Verheyen, Toon;
Görnemann, Janina;
Verbinnen, Iris;
Boens, Shannah;
Beullens, Monique;
Van Eynde, Aleyde;
Bollen, Mathieu

Publication type:

Article

Characterization of human herpesvirus 6A/B U94 as ATPase, helicase, exonuclease and DNA-binding proteins.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 6084, doi. 10.1093/nar/gkv503

By:

Trempe, Frédéric;
Gravel, Annie;
Dubuc, Isabelle;
Wallaschek, Nina;
Collin, Vanessa;
Gilbert-Girard, Shella;
Morissette, Guillaume;
Kaufer, Benedikt B.;
Flamand, Louis

Publication type:

Article

Identification of protein coding regions in RNA transcripts.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 1, doi. 10.1093/nar/gkv227

By:

Shiyuyun Tang;
Lomsadze, Alexandre;
Borodovsky, Mark

Publication type:

Article

DNA-PKcs phosphorylates hnRNP-A1 to facilitate the RPA-to-POT1 switch and telomere capping after replication.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 5971, doi. 10.1093/nar/gkv539

By:

Jiangdong Sui;
Yu-Fen Lin;
Kangling Xu;
Kyung-Jong Lee;
Dong Wang;
Chen, Benjamin P. C.

Publication type:

Article

Cdt1-binding protein GRWD1 is a novel histone-binding protein that facilitates MCM loading through its influence on chromatin architecture.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 5898, doi. 10.1093/nar/gkv509

By:

Nozomi Sugimoto;
Kazumitsu Maehara;
Kazumasa Yoshida;
Shuhei Yasukouchi;
Satoko Osano;
Shinya Watanabe;
Masahiro Aizawa;
Takashi Yugawa;
Tohru Kiyono;
Hitoshi Kurumizaka;
Yasuyuki Ohkawa;
Masatoshi Fujita

Publication type:

Article

The Cas6e ribonuclease is not required for interference and adaptation by the E. coli type I-E CRISPR-Cas system.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 6049, doi. 10.1093/nar/gkv546

By:

Semenova, Ekaterina;
Kuznedelov, Konstantin;
Datsenko, Kirill A.;
Boudry, Pierre M.;
Savitskaya, Ekaterina E.;
Medvedeva, Sofia;
Beloglazova, Natalia;
Logacheva, Maria;
Yakunin, Alexander F.;
Severinov, Konstantin

Publication type:

Article

Destruction of a distal hypoxia response element abolishes trans-activation of the PAG1 gene mediated by HIF-independent chromatin looping.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 5810, doi. 10.1093/nar/gkv506

By:

Schörg, Alexandra;
Santambrogio, Sara;
Platt, James L.;
Schödel, Johannes;
Lindenmeyer, Maja T.;
Cohen, Clemens D.;
Schrödter, Katrin;
Mole, David R.;
Wenger, Roland H.;
Hoogewijs, David

Publication type:

Article

Structure-guided sequence speci?city engineering of the modification-dependent restriction endonuclease LpnPI.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 6144, doi. 10.1093/nar/gkv548

By:

Sasnauskas, Giedrius;
Zagorskaitė, Evelina;
Kauneckaitė, Kotryna;
Tamulaitiene, Giedre;
Siksnys, Virginijus

Publication type:

Article

SLX4 contributes to telomere preservation and regulated processing of telomeric joint molecule intermediates.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 5912, doi. 10.1093/nar/gkv522

By:

Sarkar, Jaya;
Bingbing Wan;
Jinhu Yin;
Vallabhaneni, Haritha;
Horvath, Kent;
Kulikowicz, Tomasz;
Bohr, Vilhelm A.;
Yanbin Zhang;
Ming Lei;
Yie Liu

Publication type:

Article

Novel mechanism of gene regulation: the protein Rv1222 of Mycobacterium tuberculosis inhibits transcription by anchoring the RNA polymerase onto DNA.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 5855, doi. 10.1093/nar/gkv516

By:

Rudra, Paulami;
Prajapati, Ranjit Kumar;
Banerjee, Rajdeep;
Sengupta, Shreya;
Mukhopadhyay, Jayanta

Publication type:

Article

Stereospecific suppression of active site mutants by methylphosphonate substituted substrates reveals the stereochemical course of site-specific DNA recombination.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 6123, doi. 10.1093/nar/gkv513

By:

Rowley, Paul A.;
Kachroo, Aashiq H.;
Chien-Hui Ma;
Maciaszek, Anna D.;
Guga, Piotr;
Jayaram, Makkuni

Publication type:

Article

Significant expansion of the REST/NRSF cistrome in human versus mouse embryonic stem cells: potential implications for neural development.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 5730, doi. 10.1093/nar/gkv514

By:

Rockowitz, Shira;
Deyou Zheng

Publication type:

Article

SplicePie: a novel analytical approach for the detection of alternative, non-sequential and recursive splicing.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 1, doi. 10.1093/nar/gkv242

By:

Pulyakhina, Irina;
Gazzoli, Isabella;
't Hoen, Peter A. C.;
Verwey, Nisha;
den Dunnen, Johan;
Aartsma-Rus, Annemieke;
Laros, Jeroen F. J.

Publication type:

Article

Mutations in the CRE pocket of bacterial RNA polymerase affect multiple steps of transcription.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 5798, doi. 10.1093/nar/gkv504

By:

Petushkov, Ivan;
Pupov, Danil;
Bass, Irina;
Kulbachinskiy, Andrey

Publication type:

Article

Modulation of LSD1 phosphorylation by CK2/WIP1 regulates RNF168-dependent 53BP1 recruitment in response to DNA damage.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 5936, doi. 10.1093/nar/gkv528

By:

Bin Peng;
Jing Wang;
Yuan Hu;
Hongli Zhao;
Wenya Hou;
Hongchang Zhao;
Hailong Wang;
Ji Liao;
Xingzhi Xu

Publication type:

Article

Regulation of the Type I-F CRISPR-Cas system by CRP-cAMP and GalM controls spacer acquisition and interference.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 6038, doi. 10.1093/nar/gkv517

By:

Patterson, Adrian G.;
Chang, James T.;
Taylor, Corinda;
Fineran, Peter C.

Publication type:

Article

Two mechanisms coordinate replication termination by the Escherichia coli Tus-Ter complex.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 5924, doi. 10.1093/nar/gkv527

By:

Pandey, Manjula;
Elshenawy, Mohamed M.;
Jergic, Slobodan;
Masateru Takahashi;
Dixon, Nicholas E.;
Hamdan, Samir M.;
Patel, Smita S.

Publication type:

Article

Yeast high mobility group protein HMO1 stabilizes chromatin and is evicted during repair of DNA double strand breaks.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 5759, doi. 10.1093/nar/gkv498

By:

Panday, Arvind;
LiJuan Xiao;
Grove, Anne

Publication type:

Article

Nicked-site substrates for a serine recombinase reveal enzyme-DNA communications and an essential tethering role of covalent enzyme-DNA linkages.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 6134, doi. 10.1093/nar/gkv521

By:

Olorunniji, Femi J.;
McPherson, Arlene L.;
Pavlou, Hania J.;
McIlwraith, Michael J.;
Brazier, John A.;
Cosstick, Richard;
Stark, W. Marshall

Publication type:

Article

Synthesis and triplex-forming properties of oligonucleotides capable of recognizing corresponding DNA duplexes containing four base pairs.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 5675, doi. 10.1093/nar/gkv496

By:

Akihiro Ohkubo;
Kenji Yamada;
Yu Ito;
Kiichi Yoshimura;
Koichiro Miyauchi;
Takashi Kanamori;
Yoshiaki Masaki;
Kohji Seio;
Hideya Yuasa;
Mitsuo Sekine

Publication type:

Article

Quantitative characterization of protein-protein complexes involved in base excision DNA repair.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 6009, doi. 10.1093/nar/gkv569

By:

Moor, Nina A.;
Vasil'eva, Inna A.;
Anarbaev, Rashid O.;
Antson, Alfred A.;
Lavrik, Olga I.

Publication type:

Article

N protein from lambdoid phages transforms NusA into an antiterminator by modulating NusA-RNA polymerase flap domain interactions.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 5744, doi. 10.1093/nar/gkv479

By:

Mishra, Saurabh;
Sen, Ranjan

Publication type:

Article

Spring loading a pre-cleavage intermediate for hairpin telomere formation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 6062, doi. 10.1093/nar/gkv497

By:

Lucyshyn, Danica;
Shu Hui Huang;
Kobryn, Kerri

Publication type:

Article

Gene target specificity of the Super Elongation Complex (SEC) family: how HIV-1 Tat employs selected SEC members to activate viral transcription.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 5868, doi. 10.1093/nar/gkv541

By:

Huasong Lu;
Zichong Li;
Wei Zhang;
Schulze-Gahmen, Ursula;
Yuhua Xue;
Qiang Zhou

Publication type:

Article

Post-conversion targeted capture of modified cytosines in mammalian and plant genomes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 1, doi. 10.1093/nar/gkv244

By:

Qing Li;
Masako Suzuki;
Wendt, Jennifer;
Patterson, Nicole;
Eichten, Steven R.;
Hermanson, Peter J.;
Green, Dawn;
Jeddeloh, Jeffrey;
Richmond, Todd;
Rosenbaum, Heidi;
Burgess, Daniel;
Springer, Nathan M.;
Greally, John M.

Publication type:

Article

Identifying high-affinity aptamer ligands with defined cross-reactivity using high-throughput guided systematic evolution of ligands by exponential enrichment.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 1, doi. 10.1093/nar/gkv534

By:

Levay, Agata;
Brenneman, Randall;
Hoinka, Jan;
Sant, David;
Cardone, Marco;
Trinchieri, Giorgio;
Przytycka, Teresa M.;
Berezhnoy, Alexey

Publication type:

Article

Global transcription network incorporating distal regulator binding reveals selective cooperation of cancer drivers and risk genes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 5716, doi. 10.1093/nar/gkv532

By:

Kwoneel Kim;
Woojin Yang;
Kang Seon Lee;
Hyoeun Bang;
Kiwon Jang;
Sang Cheol Kim;
Jin Ok Yang;
Seongjin Park;
Kiejung Park;
Jung Kyoon Choi

Publication type:

Article

Robust meta-analysis of gene expression using the elastic net.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 1, doi. 10.1093/nar/gkv229

By:

Hughey, Jacob J.;
Butte, Atul J.

Publication type:

Article

Rational evolution of Cd2+-specific DNAzymes with phosphorothioate modified cleavage junction and Cd2+ sensing.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 6125, doi. 10.1093/nar/gkv519

By:

Po-Jung Jimmy Huang;
Juewen Liu

Publication type:

Article

De novo design of heat-repressible RNA thermosensors in E. coli.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 6166, doi. 10.1093/nar/gkv499

By:

Hoynes-O'Connor, Allison;
Hinman, Kristina;
Kirchner, Lukas;
Tae Seok Moon

Publication type:

Article

Dumbbell-PCR: a method to quantify specific small RNA variants with a single nucleotide resolution at terminal sequences.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 1, doi. 10.1093/nar/gkv218

By:

Shozo Honda;
Yohei Kirino

Publication type:

Article

Large scale analysis of the mutational landscape in HT-SELEX improves aptamer discovery.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 5699, doi. 10.1093/nar/gkv308

By:

Hoinka, Jan;
Berezhnoy, Alexey;
Phuong Dao;
Sauna, Zuben E.;
Gilboa, Eli;
Przytycka, Teresa M.

Publication type:

Article

TRF1 and TRF2 binding to telomeres is modulated by nucleosomal organization.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 5824, doi. 10.1093/nar/gkv507

By:

Galati, Alessandra;
Micheli, Emanuela;
Alicata, Claudia;
Ingegnere, Tiziano;
Cicconi, Alessandro;
Pusch, Miriam Caroline;
Giraud-Panis, Marie-Josephe;
Gilson, Eric;
Cacchione, Stefano

Publication type:

Article

Real-time single-molecule studies of the motions of DNA polymerase fingers illuminate DNA synthesis mechanisms.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 5998, doi. 10.1093/nar/gkv547

By:

Evans, Geraint W.;
Hohlbein, Johannes;
Craggs, Timothy;
Aigrain, Louise;
Kapanidis, Achillefs N.

Publication type:

Article

An implementation of the Gillespie algorithm for RNA kinetics with logarithmic time update.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 5708, doi. 10.1093/nar/gkv480

By:

Dykeman, Eric C.

Publication type:

Article

ATP-dependent motor activity of the transcription termination factor Rho from Mycobacterium tuberculosis.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 6099, doi. 10.1093/nar/gkv505

By:

D'Heygère, François;
Schwartz, Annie;
Coste, Franck;
Castaing, Bertrand;
Boudvillain, Marc

Publication type:

Article

Dynamics of MBD2 deposition across methylated DNA regions during malignant transformation of human mammary epithelial cells.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 5838, doi. 10.1093/nar/gkv508

By:

Devailly, Guillaume;
Grandin, Mélodie;
Perriaud, Laury;
Mathot, Pauline;
Delcros, Jean-Guy;
Bidet, Yannick;
Morel, Anne-Pierre;
Bignon, Jean-Yves;
Puisieux, Alain;
Mehlen, Patrick;
Dante, Robert

Publication type:

Article

DNA3'pp5'G de-capping activity of aprataxin: effect of cap nucleoside analogs and structural basis for guanosine recognition.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 6075, doi. 10.1093/nar/gkv501

By:

Chauleau, Mathieu;
Jacewicz, Agata;
Shuman, Stewart

Publication type:

Article

Targeting chromatin binding regulation of constitutively active AR variants to overcome prostate cancer resistance to endocrine-based therapies.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 5880, doi. 10.1093/nar/gkv262

By:

Siu Chiu Chan;
Selth, Luke A.;
Yingming Li;
Nyquist, Michael D.;
Lu Miao;
Bradner, James E.;
Raj, Ganesh V.;
Tilley, Wayne D.;
Dehm, Scott M.

Publication type:

Article

Bacillus subtilis RecO and SsbA are crucial for RecA-mediated recombinational DNA repair.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 5984, doi. 10.1093/nar/gkv545

By:

Carrasco, Begoña;
Yadav, Tribhuwan;
Serrano, Ester;
Alonso, Juan C.

Publication type:

Article

ATP-dependent G-quadruplex unfolding by Bloom helicase exhibits low processivity.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 5961, doi. 10.1093/nar/gkv531

By:

Budhathoki, Jagat B.;
Stafford, Edward J.;
Yodh, Jaya G.;
Balci, Hamza

Publication type:

Article

Splicing of a non-coding antisense transcript controls LEF1 gene expression.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 5785, doi. 10.1093/nar/gkv502

By:

Beltran, Manuel;
Aparicio-Prat, Estel;
Mazzolini, Rocco;
Millanes-Romero, Alba;
Massó, Pere;
Jenner, Richard G.;
Díaz, Víctor M.;
Peiró, Sandra;
García de Herreros, Antonio

Publication type:

Article

AP endonuclease 1 prevents trinucleotide repeat expansion via a novel mechanism during base excision repair.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 5948, doi. 10.1093/nar/gkv530

By:

Beaver, Jill M.;
Yanhao Lai;
Meng Xu;
Casin, Astrid H.;
Laverde, Eduardo E.;
Yuan Liu

Publication type:

Article

Outwitting EF-Tu and the ribosome: translation with D-amino acids.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 5687, doi. 10.1093/nar/gkv566

By:

Achenbach, John;
Jahnz, Michael;
Bethge, Lucas;
Paal, Krisztina;
Jung, Maria;
Schuster, Maja;
Albrecht, Renate;
Jarosch, Florian;
Nierhaus, Knud H.;
Klussmann, Sven

Publication type:

Article