Works matching IS 03051048 AND DT 2015 AND VI 43 AND IP 11

Results: 39

New insights into the performance of human whole-exome capture platforms.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 1, doi. 10.1093/nar/gkv216

By:

Meienberg, Janine;
Zerjavic, Katja;
Keller, Irene;
Okoniewski, Michal;
Patrignani, Andrea;
Ludin, Katja;
Zhenyu Xu;
Steinmann, Beat;
Carrel, Thierry;
Röthlisberger, Benno;
Schlapbach, Ralph;
Bruggmann, Rémy;
Matyas, Gabor

Publication type:

Article

Intramolecular circularization increases efficiency of RNA sequencing and enables CLIP-Seq of nuclear RNA from human cells.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 1, doi. 10.1093/nar/gkv213

By:

Yongjun Chu;
Tao Wang;
Dodd, David;
Yang Xie;
Janowski, Bethany A.;
Corey, David R.

Publication type:

Article

A statistical framework for revealing signaling pathways perturbed by DNA variants.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 1, doi. 10.1093/nar/gkv203

By:

Wilentzik, Roni;
Gat-Viks, Irit

Publication type:

Article

Broadening the versatility of lentiviral vectors as a tool in nucleic acid research via genetic code expansion.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 1, doi. 10.1093/nar/gkv202

By:

Yongxiang Zheng;
Fei Yu;
Yiming Wu;
Longlong Si;
Huan Xu;
Chuanling Zhang;
Qing Xia;
Sulong Xiao;
Qi Wang;
Qiuchen He;
Peng Chen;
Jiangyun Wang;
Taira, Kazunari;
Lihe Zhang;
Demin Zhou

Publication type:

Article

Probing a label-free local bend in DNA by single molecule tethered particle motion.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 1, doi. 10.1093/nar/gkv201

By:

Brunet, Annaël;
Chevalier, Sébastien;
Destainville, Nicolas;
Manghi, Manoel;
Rousseau, Philippe;
Salhi, Maya;
Salomé, Laurence;
Tardin, Catherine

Publication type:

Article

A fluorescence-based helicase assay: application to the screening of G-quadruplex ligands.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 1, doi. 10.1093/nar/gkv193

By:

Mendoza, Oscar;
Gueddouda, Nassima Meriem;
Boulé, Jean-Baptiste;
Bourdoncle, Anne;
Mergny, Jean-Louis

Publication type:

Article

Development of a high-resolution NGS-based HLA-typing and analysis pipeline.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 1, doi. 10.1093/nar/gkv184

By:

Wittig, Michael;
Anmarkrud, Jarl A.;
Kässens, Jan C.;
Koch, Simon;
Forster, Michael;
Ellinghaus, Eva;
Hov, Johannes R.;
Sauer, Sascha;
Schimmler, Manfred;
Ziemann, Malte;
Görg, Siegfried;
Jacob, Frank;
Karlsen, Tom H.;
Franke, Andre

Publication type:

Article

Corrigendum.

Published in:: Nucleic Acids Research, 2015, v. 43, n. 11, p. 5673, doi. 10.1093/nar/gkv510
Publication type:: Article

Structure of the nuclease subunit of human mitochondrial RNase P.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5664, doi. 10.1093/nar/gkv481

By:

Reinhard, Linda;
Sridhara, Sagar;
Hällberg, B. Martin

Publication type:

Article

Structural and sequencing analysis of local target DNA recognition by MLV integrase.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5647, doi. 10.1093/nar/gkv410

By:

Aiyer, Sriram;
Rossi, Paolo;
Malani, Nirav;
Schneider, William M.;
Chandar, Ashwin;
Bushman, Frederic D.;
Montelione, Gaetano T.;
Roth, Monica J.

Publication type:

Article

Duplex stem-loop-containing quadruplex motifs in the human genome: a combined genomic and structural study.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5630, doi. 10.1093/nar/gkv355

By:

Kah Wai Lim;
Piroon Jenjaroenpun;
Zhen Jie Low;
Zi Jian Khong;
Yi Siang Ng;
Kuznetsov, Vladimir Andreevich;
Anh Tuân Phan

Publication type:

Article

The identity of the discriminator base has an impact on CCA addition.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5617, doi. 10.1093/nar/gkv471

By:

Wende, Sandra;
Bonin, Sonja;
Götze, Oskar;
Betat, Heike;
Mörl, Mario

Publication type:

Article

Assessment of small RNA sorting into different extracellular fractions revealed by high-throughput sequencing of breast cell lines.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5601, doi. 10.1093/nar/gkv432

By:

Tosar, Juan Pablo;
Gámbaro, Fabiana;
Sanguinetti, Julia;
Bonilla, Braulio;
Witwer, Kenneth W.;
Cayota, Alfonso

Publication type:

Article

Generation of functionally distinct isoforms of PTBP3 by alternative splicing and translation initiation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5586, doi. 10.1093/nar/gkv429

By:

Lit-Yeen Tan;
Whitfield, Peter;
Llorian, Miriam;
Monzon-Casanova, Elisa;
Diaz-Munoz, Manuel D.;
Turner, Martin;
Smith, Christopher W. J.

Publication type:

Article

Mechanistic insights into temperature-dependent regulation of the simple cyanobacterial hsp17 RNA thermometer at base-pair resolution.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5572, doi. 10.1093/nar/gkv414

By:

Wagner, Dominic;
Rinnenthal, Jörg;
Narberhaus, Franz;
Schwalbe, Harald

Publication type:

Article

mRNA transfection of a novel TAL effector nuclease (TALEN) facilitates efficient knockout of HIV co-receptor CCR5.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5560, doi. 10.1093/nar/gkv469

By:

Mock, Ulrike;
Machowicz, Rafał;
Hauber, Ilona;
Horn, Stefan;
Abramowski, Pierre;
Berdien, Belinda;
Hauber, Joachim;
Fehse, Boris

Publication type:

Article

Structural insights into catalysis and dimerization enhanced exonuclease activity of RNase J.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5550, doi. 10.1093/nar/gkv444

By:

Ye Zhao;
Meihua Lu;
Hui Zhang;
Jing Hu;
Congli Zhou;
Qiang Xu;
Ul Hussain Shah, Amir Miraj;
Hong Xu;
Liangyan Wang;
Yuejin Hua

Publication type:

Article

Mitochondrial translocation of APE1 relies on the MIA pathway.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5451, doi. 10.1093/nar/gkv433

By:

Barchiesi, Arianna;
Wasilewski, Michal;
Chacinska, Agnieszka;
Tell, Gianluca;
Vascotto, Carlo

Publication type:

Article

The telomerase essential N-terminal domain promotes DNA synthesis by stabilizing short RNA-DNA hybrids.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5537, doi. 10.1093/nar/gkv406

By:

Akiyama, Benjamin M.;
Parks, Joseph W.;
Stone, Michael D.

Publication type:

Article

Arginine methylation of DRBD18 differentially impacts its opposing effects on the trypanosome transcriptome.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5501, doi. 10.1093/nar/gkv428

By:

Lott, Kaylen;
Mukhopadhyay, Shreya;
Jun Li;
Jie Wang;
Jin Yao;
Yijun Sun;
Jun Qu;
Read, Laurie K.

Publication type:

Article

Next-generation sequencing reveals the biological significance of the N²,3-ethenoguanine lesion in vivo.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5489, doi. 10.1093/nar/gkv243

By:

Shiou-chi Chang;
Fedeles, Bogdan I.;
Jie Wu;
Delaney, James C.;
Deyu Li;
Linlin Zhao;
Christov, Plamen P.;
Yau, Emily;
Singh, Vipender;
Jost, Marco;
Drennan, Catherine L.;
Marnett, Lawrence J.;
Rizzo, Carmelo J.;
Levine, Stuart S.;
Guengerich, F. Peter;
Essigmann, John M.

Publication type:

Article

XPD localizes in mitochondria and protects the mitochondrial genome from oxidative DNA damage.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5476, doi. 10.1093/nar/gkv472

By:

Jing Liu;
Hongbo Fang;
Zhenfen Chi;
Zan Wu;
Di Wei;
Dongliang Mo;
Kaifeng Niu;
Balajee, Adayabalam S.;
Hei, Tom K.;
Linghu Nie;
Yongliang Zhao

Publication type:

Article

CDK-mediated RNF4 phosphorylation regulates homologous recombination in S-phase.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5465, doi. 10.1093/nar/gkv434

By:

Kuntian Luo;
Min Deng;
Yunhui Li;
Chenming Wu;
Ziwen Xu;
Jian Yuan;
Zhenkun Lou

Publication type:

Article

Human nucleolar protein Nop52 (RRP1/NNP-1) is involved in site 2 cleavage in internal transcribed spacer 1 of pre-rRNAs at early stages of ribosome biogenesis.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5524, doi. 10.1093/nar/gkv470

By:

Harunori Yoshikawa;
Hideaki Ishikawa;
Keiichi Izumikawa;
Yutaka Miura;
Toshiya Hayano;
Toshiaki Isobe;
Simpson, Richard J.;
Nobuhiro Takahashi

Publication type:

Article

Human RNase P ribonucleoprotein is required for formation of initiation complexes of RNA polymerase III.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5442, doi. 10.1093/nar/gkv447

By:

Serruya, Raphael;
Orlovetskie, Natalie;
Reiner, Robert;
Dehtiar-Zilber, Yana;
Wesolowski, Donna;
Altman, Sidney;
Jarrous, Nayef

Publication type:

Article

HAT3-mediated acetylation of PCNA precedes PCNA monoubiquitination following exposure to UV radiation in Leishmania donovani.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5423, doi. 10.1093/nar/gkv431

By:

Kumar, Devanand;
Saha, Swati

Publication type:

Article

An HDAC2-TET1 switch at distinct chromatin regions significantly promotes the maturation of pre-iPS to iPS cells.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5409, doi. 10.1093/nar/gkv430

By:

Tingyi Wei;
Wen Chen;
Xiukun Wang;
Man Zhang;
Jiayu Chen;
Songcheng Zhu;
Long Chen;
Dandan Yang;
Guiying Wang;
Wenwen Jia;
Yangyang Yu;
Tao Duan;
Minjuan Wu;
Houqi Liu;
Shaorong Gao;
Jiuhong Kang

Publication type:

Article

The SOX9 upstream region prone to chromosomal aberrations causing campomelic dysplasia contains multiple cartilage enhancers.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5394, doi. 10.1093/nar/gkv426

By:

Baojin Yao;
Qiuqing Wang;
Chia-Feng Liu;
Bhattaram, Pallavi;
Wei Li;
Mead, Timothy J.;
Crish, James F.;
Lefebvre, Véronique

Publication type:

Article

Role of intragenic binding of cAMP responsive protein (CRP) in regulation of the succinate dehydrogenase genes Rv0249c-Rv0247c in TB complex mycobacteria.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5377, doi. 10.1093/nar/gkv420

By:

Knapp, Gwendowlyn S.;
Lyubetskaya, Anna;
Peterson, Matthew W.;
Gomes, Antonio L. C.;
Zhuo Ma;
Galagan, James E.;
McDonough, Kathleen A.

Publication type:

Article

Intercalation processes of copper complexes in DNA.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5364, doi. 10.1093/nar/gkv467

By:

Galindo-Murillo, Rodrigo;
García-Ramos, Juan Carlos;
Ruiz-Azuara, Lena;
Cheatham III, Thomas E.;
Cortés-Guzmán, Fernando

Publication type:

Article

Assembly constraints drive co-evolution among ribosomal constituents.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5352, doi. 10.1093/nar/gkv448

By:

Mallik, Saurav;
Hiroshi Akashi;
Kundu, Sudip

Publication type:

Article

Prediction of nucleic acid binding probability in proteins: a neighboring residue network based score.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5340, doi. 10.1093/nar/gkv446

By:

Zhichao Miao;
Westhof, Eric

Publication type:

Article

Accurate identification of centromere locations in yeast genomes using Hi-C.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5331, doi. 10.1093/nar/gkv424

By:

Varoquaux, Nelle;
Liachko, Ivan;
Ay, Ferhat;
Burton, Joshua N.;
Shendure, Jay;
Dunham, Maitreya J.;
Vert, Jean-Philippe;
Noble, William S.

Publication type:

Article

Signal integration by the CYP1A1 promoter -- a quantitative study.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5318, doi. 10.1093/nar/gkv423

By:

Schulthess, Pascal;
Löffler, Alexandra;
Vetter, Silvia;
Kreft, Luisa;
Schwarz, Michael;
Braeuning, Albert;
Blüthgen, Nils

Publication type:

Article

Signatures of accelerated somatic evolution in gene promoters in multiple cancer types.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5307, doi. 10.1093/nar/gkv419

By:

Smith, Kyle S.;
Yadav, Vinod K.;
Pedersen, Brent S.;
Shaknovich, Rita;
Geraci, Mark W.;
Pollard, Katherine S.;
De, Subhajyoti

Publication type:

Article

Shape-selective recognition of DNA abasic sites by metallohelices: inhibition of human AP endonuclease 1.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5297, doi. 10.1093/nar/gkv438

By:

Malina, Jaroslav;
Scott, Peter;
Brabec, Viktor

Publication type:

Article

Stereochemical control of nucleosome targeting by platinum-intercalator antitumor agents.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5284, doi. 10.1093/nar/gkv356

By:

Chua, Eugene Y. D.;
Davey, Gabriela E.;
Chee Fei Chin;
Dröge, Peter;
Wee Han Ang;
Davey, Curt A.

Publication type:

Article

Intermolecular 'cross-torque': the N<sup>4</sup>-cytosine propargyl residue is rotated to the 'CH'-edge as a result of Watson-Crick interaction.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5275, doi. 10.1093/nar/gkv285

By:

Domingo, Olwen;
Hellmuth, Isabell;
Jäschke, Andres;
Kreutz, Christoph;
Helm, Mark

Publication type:

Article

Design and bioinformatics analysis of genome-wide CLIP experiments.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 11, p. 5263, doi. 10.1093/nar/gkv439

By:

Tao Wang;
Guanghua Xiao;
Yongjun Chu;
Zhang, Michael Q.;
Corey, David R.;
Yang Xie

Publication type:

Article