Works matching IS 03051048 AND DT 2015 AND VI 43 AND IP 10

Results: 42

The ribonuclease DIS3 promotes let-7 miRNA maturation by degrading the pluripotency factor LIN28B mRNA.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 5182, doi. 10.1093/nar/gkv387

By:

Segalla, Simona;
Pivetti, Silvia;
Todoerti, Katia;
Chudzik, Malgorzata Agata;
Giuliani, Erica Claudia;
Lazzaro, Federico;
Volta, Viviana;
Lazarevic, Dejan;
Musco, Giovanna;
Muzi-Falconi, Marco;
Neri, Antonino;
Biffo, Stefano;
Tonon, Giovanni

Publication type:

Article

Structural and functional analysis reveals that human OASL binds dsRNA to enhance RIG-I signaling.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 5236, doi. 10.1093/nar/gkv389

By:

Ibsen, Mikkel Søes;
Gad, Hans Henrik;
Andersen, Line Lykke;
Hornung, Veit;
Julkunen, Ilkka;
Sarkar, Saumendra N.;
Hartmann, Rune

Publication type:

Article

Crystal structure of the Bloom's syndrome helicase indicates a role for the HRDC domain in conformational changes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 5221, doi. 10.1093/nar/gkv373

By:

Newman, Joseph A.;
Savitsky, Pavel;
Allerston, Charles K.;
Bizard, Anna H.;
Özer, Özgün;
Sarlós, Kata;
Ying Liu;
Pardon, Els;
Steyaert, Jan;
Hickson, Ian D.;
Gileadi, Opher

Publication type:

Article

A novel RNA binding surface of the TAM domain of TIP5/BAZ2A mediates epigenetic regulation of rRNA genes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 5208, doi. 10.1093/nar/gkv365

By:

Anosova, Irina;
Melnik, Svitlana;
Tripsianes, Konstantinos;
Kateb, Fatiha;
Grummt, Ingrid;
Sattler, Michael

Publication type:

Article

Structure-based functional identification of Helicobacter pylori HP0268 as a nuclease with both DNA nicking and RNase activities.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 5194, doi. 10.1093/nar/gkv348

By:

Ki-Young Lee;
Kyu-Yeon Lee;
Ji-Hun Kim;
In-Gyun Lee;
Sung-Hee Lee;
Dae-Won Sim;
Hyung-Sik Won;
Bong-Jin Lee

Publication type:

Article

New insights into the regulatory mechanisms of ppGpp and DksA on Escherichia coli RNA polymerase-promoter complex.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 5249, doi. 10.1093/nar/gkv391

By:

Doniselli, Nicola;
Rodriguez-Aliaga, Piere;
Amidani, Davide;
Bardales, Jorge A.;
Bustamante, Carlos;
Guerra, Daniel G.;
Rivetti, Claudio

Publication type:

Article

On the mechanism of RNA phosphodiester backbone cleavage in the absence of solvent.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 5171, doi. 10.1093/nar/gkv288

By:

Riml, Christian;
Glasner, Heidelinde;
Rodgers, M. T.;
Micura, Ronald;
Breuker, Kathrin

Publication type:

Article

Dynamic signal processing by ribozyme-mediated RNA circuits to control gene expression.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 5158, doi. 10.1093/nar/gkv287

By:

Shen, Shensi;
Rodrigo, Guillermo;
Prakash, Satya;
Majer, Eszter;
Landrain, Thomas E.;
Kirov, Boris;
Daròs, José-Antonio;
Jaramillo, Alfonso

Publication type:

Article

Inosine modifications in human tRNAs are incorporated at the precursor tRNA level.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 5145, doi. 10.1093/nar/gkv277

By:

Torres, Adrian Gabriel;
Piñeyro, David;
Rodríguez-Escribà, Marta;
Camacho, Noelia;
Reina, Oscar;
Saint-Léger, Adélaïde;
Filonava, Liudmila;
Batlle, Eduard;
de Pouplana, Lluís Ribas

Publication type:

Article

Identification of recurrent regulated alternative splicing events across human solid tumors.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 5130, doi. 10.1093/nar/gkv210

By:

Danan-Gotthold, Miri;
Golan-Gerstl, Regina;
Eisenberg, Eli;
Meir, Keren;
Karni, Rotem;
Levanon, Erez Y.

Publication type:

Article

Argonaute of the archaeon Pyrococcus furiosus is a DNA-guided nuclease that targets cognate DNA.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 5120, doi. 10.1093/nar/gkv415

By:

Swarts, Daan C.;
Hegge, Jorrit W.;
Hinojo, Ismael;
Shiimori, Masami;
Ellis, Michael A.;
Dumrongkulraksa, Justin;
Terns, Rebecca M.;
Terns, Michael P.;
van der Oost, John

Publication type:

Article

Molecular insights into HSD10 disease: impact of SDR5C1 mutations on the human mitochondrial RNase P complex.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 5112, doi. 10.1093/nar/gkv408

By:

Vilardo, Elisa;
Rossmanith, Walter

Publication type:

Article

Translation initiation factor eIF3 promotes programmed stop codon readthrough.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 5099, doi. 10.1093/nar/gkv421

By:

Beznosková, Petra;
Wagner, Susan;
Jansen, Myrte Esmeralda;
von der Haar, Tobias;
Valášek, Leoš Shivaya

Publication type:

Article

Repression of hypoxia-inducible factor α signaling by Set7-mediated methylation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 5081, doi. 10.1093/nar/gkv379

By:

Xing Liu;
Zhu Chen;
Chenxi Xu;
Xiaoqian Leng;
Hong Cao;
Gang Ouyang;
Wuhan Xiao

Publication type:

Article

Local DNA dynamics shape mutational patterns of mononucleotide repeats in human genomes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 5065, doi. 10.1093/nar/gkv364

By:

Bacolla, Albino;
Xiao Zhu;
Hanning Chen;
Howells, Katy;
Cooper, David N.;
Vasquez, Karen M.

Publication type:

Article

Sequencing the cap-snatching repertoire of H1N1 influenza provides insight into the mechanism of viral transcription initiation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 5052, doi. 10.1093/nar/gkv333

By:

Koppstein, David;
Ashour, Joseph;
Bartel, David P.

Publication type:

Article

The transcriptional PPARβ/&sgr; network in human macrophages defines a unique agonist-induced activation state.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 5033, doi. 10.1093/nar/gkv331

By:

Adhikary, Till;
Wortmann, Annika;
Schumann, Tim;
Finkernagel, Florian;
Lieber, Sonja;
Roth, Katrin;
Toth, Philipp M.;
Diederich, Wibke E.;
Nist, Andrea;
Stiewe, Thorsten;
Kleinesudeik, Lara;
Reinartz, Silke;
Müller-Brüsselbach, Sabine;
Müller, Rolf

Publication type:

Article

The 9-1-1 checkpoint clamp coordinates resection at DNA double strand breaks.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 5017, doi. 10.1093/nar/gkv409

By:

Ngo, Greg H. P.;
Lydall, David

Publication type:

Article

A prophage-encoded actin-like protein required for efficient viral DNA replication in bacteria.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 5002, doi. 10.1093/nar/gkv374

By:

Donovan, Catriona;
Heyer, Antonia;
Pfeifer, Eugen;
Polen, Tino;
Wittmann, Anja;
Krämer, Reinhard;
Frunzke, Julia;
Bramkamp, Marc

Publication type:

Article

The amino-terminal tails of histones H2A and H3 coordinate efficient base excision repair, DNA damage signaling and postreplication repair in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 4990, doi. 10.1093/nar/gkv372

By:

Meas, Rithy;
Smerdon, Michael J.;
Wyrick, John J.

Publication type:

Article

High levels of TopBP1 induce ATR-dependent shut-down of rRNA transcription and nucleolar segregation.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 4975, doi. 10.1093/nar/gkv371

By:

Sokka, Miiko;
Rilla, Kirsi;
Miinalainen, Ilkka;
Pospiech, Helmut;
Syväoja, Juhani E.

Publication type:

Article

RPA70 depletion induces hSSB1/2-INTS3 complex to initiate ATR signaling.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 4962, doi. 10.1093/nar/gkv369

By:

Kar, Ananya;
Kaur, Manpreet;
Ghosh, Tanushree;
Khan, Md. Muntaz;
Sharma, Aparna;
Shekhar, Ritu;
Varshney, Akhil;
Saxena, Sandeep

Publication type:

Article

Ectopic expression of RNF168 and 53BP1 increases mutagenic but not physiological non-homologous end joining.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 4950, doi. 10.1093/nar/gkv336

By:

Dali Zong;
Callén, Elsa;
Pegoraro, Gianluca;
Lukas, Claudia;
Lukas, Jiri;
Nussenzweig, André

Publication type:

Article

H3K4 monomethylation dictates nucleosome dynamics and chromatin remodeling at stress-responsive genes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 4937, doi. 10.1093/nar/gkv220

By:

Nadal-Ribelles, Mariona;
Mas, Glòria;
Millán-Zambrano, Gonzalo;
Solé, Carme;
Ammerer, Gustav;
Chávez, Sebastián;
Posas, Francesc;
de Nadal, Eulàlia

Publication type:

Article

A novel sigma factor reveals a unique regulon controlling cell-specific recombination in Mycoplasma genitalium.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 4923, doi. 10.1093/nar/gkv422

By:

Torres-Puig, Sergi;
Broto, Alicia;
Querol, Enrique;
Piñol, Jaume;
Pich, Oscar Q.

Publication type:

Article

Stable complex formation of CENP-B with the CENP-A nucleosome.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 4909, doi. 10.1093/nar/gkv405

By:

Risa Fujita;
Koichiro Otake;
Yasuhiro Arimura;
Naoki Horikoshi;
Yuta Miya;
Tatsuya Shiga;
Akihisa Osakabe;
Hiroaki Tachiwana;
Jun-ichirou Ohzeki;
Larionov, Vladimir;
Hiroshi Masumoto;
Hitoshi Kurumizaka

Publication type:

Article

MDC1 functionally identified as an androgen receptor co-activator participates in suppression of prostate cancer.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 4893, doi. 10.1093/nar/gkv394

By:

Chunyu Wang;
Hongmiao Sun;
Renlong Zou;
Tingting Zhou;
Shengli Wang;
Shiying Sun;
Changci Tong;
Hao Luo;
Yanshu Li;
Zhenhua Li;
Enhua Wang;
Yuhua Chen;
Liu Cao;
Feng Li;
Yue Zhao

Publication type:

Article

Balancing acts of SRI and an auto-inhibitory domain specify Set2 function at transcribed chromatin.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 4881, doi. 10.1093/nar/gkv393

By:

Yi Wang;
Yanling Niu;
Bing Li

Publication type:

Article

Extranucleosomal DNA enhances the activity of the LSD1/CoREST histone demethylase complex.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 4868, doi. 10.1093/nar/gkv388

By:

Sang-Ah Kim;
Chatterjee, Nilanjana;
Jennings, Matthew J.;
Bartholomew, Blaine;
Song Tan

Publication type:

Article

Functional validation of mouse tyrosinase non-coding regulatory DNA elements by CRISPR-Cas9-mediated mutagenesis.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 4855, doi. 10.1093/nar/gkv375

By:

Seruggia, Davide;
Fernández, Almudena;
Cantero, Marta;
Pelczar, Pawel;
Montoliu, Lluis

Publication type:

Article

RAR/RXR binding dynamics distinguish pluripotency from differentiation associated cis-regulatory elements.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 4833, doi. 10.1093/nar/gkv370

By:

Chatagnon, Amandine;
Veber, Philippe;
Morin, Valérie;
Bedo, Justin;
Triqueneaux, Gérard;
Sémon, Marie;
Laudet, Vincent;
d'Alché-Buc, Florence;
Benoit, Gérard

Publication type:

Article

GenoLIB: a database of biological parts derived from a library of common plasmid features.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 4823, doi. 10.1093/nar/gkv272

By:

Adames, Neil R.;
Wilson, Mandy L.;
Gang Fang;
Lux, Matthew W.;
Glick, Benjamin S.;
Peccoud, Jean

Publication type:

Article

Splice junctions are constrained by protein disorder.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 4814, doi. 10.1093/nar/gkv407

By:

Smithers, Ben;
Oates, Matt E.;
Gough, Julian

Publication type:

Article

Interspecific adaptation by binary choice at de novo polyomavirus T antigen site through accelerated codon-constrained Val-Ala toggling within an intrinsically disordered region.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 4800, doi. 10.1093/nar/gkv378

By:

Lauber, Chris;
Kazem, Siamaque;
Kravchenko, Alexander A.;
Feltkamp, Mariet C. W.;
Gorbalenya, Alexander E.

Publication type:

Article

Loop flexibility in human telomeric quadruplex small-molecule complexes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 4785, doi. 10.1093/nar/gkv427

By:

Collie, Gavin W.;
Campbell, Nancy H.;
Neidle, Stephen

Publication type:

Article

Accurate read-based metagenome characterization using a hierarchical suite of unique signatures.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 1

By:

K. Freitas, Tracey Allen;
Po-E Li;
Scholz, Matthew B.;
Chain, Patrick S. G.

Publication type:

Article

A thesaurus of genetic variation for interrogation of repetitive genomic regions.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 1, doi. 10.1093/nar/gkv178

By:

Kerzendorfer, Claudia;
Konopka, Tomasz;
Nijman, Sebastian M. B.

Publication type:

Article

Analysis of strand-specific RNA-seq data using machine learning reveals the structures of transcription units in Clostridium thermocellum.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 1, doi. 10.1093/nar/gkv177

By:

Wen-Chi Chou;
Qin Ma;
Shihui Yang;
Sha Cao;
Klingeman, Dawn M.;
Brown, Steven D.;
Ying Xu

Publication type:

Article

Boosting riboswitch efficiency by RNA amplification.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 1, doi. 10.1093/nar/gkv165

By:

Emadpour, Masoumeh;
Karcher, Daniel;
Bock, Ralph

Publication type:

Article

Genome engineering of isogenic human ES cells to model autism disorders.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 1, doi. 10.1093/nar/gkv164

By:

Martinez, Refugio A.;
Stein, Jason L.;
Krostag, Anne-Rachel F.;
Nelson, Angelique M.;
Marken, John S.;
Menon, Vilas;
May, Ryan C.;
Zizhen Yao;
Kaykas, Ajamete;
Geschwind, Daniel H.;
Grimley, Joshua S.

Publication type:

Article

RoboOligo: software for mass spectrometry data to support manual and de novo sequencing of post-transcriptionally modified ribonucleic acids.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 1, doi. 10.1093/nar/gkv145

By:

Sample, Paul J.;
Gaston, Kirk W.;
Alfonzo, Juan D.;
Limbach, Patrick A.

Publication type:

Article

3dRNAscore: a distance and torsion angle dependent evaluation function of 3D RNA structures.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 1, doi. 10.1093/nar/gkv141

By:

Jian Wang;
Yunjie Zhao;
Chunyan Zhu;
Yi Xiao

Publication type:

Article