Works matching IS 03051048 AND DT 2014 AND VI 42 AND IP 8

Results: 65

A small RNA controls a protein regulator involved in antibiotic resistance in Staphylococcus aureus.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 4892, doi. 10.1093/nar/gku149

By:

Eyraud, Alex;
Tattevin, Pierre;
Chabelskaya, Svetlana;
Felden, Brice

Publication type:

Article

Domain movements of the enhancer-dependent sigma factor drive DNA delivery into the RNA polymerase active site: insights from single molecule studies.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 5177, doi. 10.1093/nar/gku146

By:

Sharma, Amit;
Leach, Robert N.;
Gell, Christopher;
Zhang, Nan;
Burrows, Patricia C.;
Shepherd, Dale A.;
Wigneshweraraj, Sivaramesh;
Smith, David Alastair;
Zhang, Xiaodong;
Buck, Martin;
Stockley, Peter G.;
Tuma, Roman

Publication type:

Article

Selective unfolding of one Ribonuclease H domain of HIV reverse transcriptase is linked to homodimer formation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 5361, doi. 10.1093/nar/gku143

By:

Zheng, Xunhai;
Pedersen, Lars C.;
Gabel, Scott A.;
Mueller, Geoffrey A.;
Cuneo, Matthew J.;
DeRose, Eugene F.;
Krahn, Juno M.;
London, Robert E.

Publication type:

Article

Reversible Top1 cleavage complexes are stabilized strand-specifically at the ribosomal replication fork barrier and contribute to ribosomal DNA stability.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 4985, doi. 10.1093/nar/gku148

By:

Krawczyk, Claudia;
Dion, Vincent;
Schär, Primo;
Fritsch, Olivier

Publication type:

Article

MicroRNA miR-92a-1 biogenesis and mRNA targeting is modulated by a tertiary contact within the miR-17∼92 microRNA cluster.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 5234, doi. 10.1093/nar/gku133

By:

Chaulk, Steven G.;
Xu, Zhizhong;
Glover, Mark J. N.;
Fahlman, Richard P.

Publication type:

Article

Regulation of promoter-proximal transcription elongation: enhanced DNA scrunching drives λQ antiterminator-dependent escape from a σ70-dependent pause.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 5097, doi. 10.1093/nar/gku147

By:

Strobel, Eric J.;
Roberts, Jeffrey W.

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 8, p. iii, doi. 10.1093/nar/gku066
Publication type:: Article

The k-junction motif in RNA structure.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 5322, doi. 10.1093/nar/gku144

By:

Wang, Jia;
Daldrop, Peter;
Huang, Lin;
Lilley, David M. J.

Publication type:

Article

HMGA1 recruits CTIP2-repressed P-TEFb to the HIV-1 and cellular target promoters.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 4962, doi. 10.1093/nar/gku168

By:

Eilebrecht, Sebastian;
Le Douce, Valentin;
Riclet, Raphael;
Targat, Brice;
Hallay, Houda;
Van Driessche, Benoît;
Schwartz, Christian;
Robette, Gwenaëlle;
Van Lint, Carine;
Rohr, Olivier;
Benecke, Arndt G.

Publication type:

Article

Structural basis for the recognition of diastereomeric 5′,8-cyclo-2′-deoxypurine lesions by the human nucleotide excision repair system.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 5020, doi. 10.1093/nar/gku162

By:

Kropachev, Konstantin;
Ding, Shuang;
Terzidis, Michael A.;
Masi, Annalisa;
Liu, Zhi;
Cai, Yuqin;
Kolbanovskiy, Marina;
Chatgilialoglu, Chryssostomos;
Broyde, Suse;
Geacintov, Nicholas E.;
Shafirovich, Vladimir

Publication type:

Article

Novel functional small RNAs are selectively loaded onto mammalian Ago1.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 5289, doi. 10.1093/nar/gku137

By:

Yamakawa, Natsuko;
Okuyama, Kazuki;
Ogata, Jun;
Kanai, Akinori;
Helwak, Aleksandra;
Takamatsu, Masako;
Imadome, Ken-ichi;
Takakura, Kohei;
Chanda, Bidisha;
Kurosaki, Natsumi;
Yamamoto, Haruna;
Ando, Kiyoshi;
Matsui, Hirotaka;
Inaba, Toshiya;
Kotani, Ai

Publication type:

Article

Structural basis for Klf4 recognition of methylated DNA.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 4859, doi. 10.1093/nar/gku134

By:

Liu, Yiwei;
Olanrewaju, Yusuf Olatunde;
Zheng, Yu;
Hashimoto, Hideharu;
Blumenthal, Robert M.;
Zhang, Xing;
Cheng, Xiaodong

Publication type:

Article

MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. e73, doi. 10.1093/nar/gku169

By:

Luo, Chengwei;
Rodriguez-R, Luis M.;
Konstantinidis, Konstantinos T.

Publication type:

Article

Type III restriction endonucleases are heterotrimeric: comprising one helicase–nuclease subunit and a dimeric methyltransferase that binds only one specific DNA.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 5139, doi. 10.1093/nar/gku122

By:

Butterer, Annika;
Pernstich, Christian;
Smith, Rachel M.;
Sobott, Frank;
Szczelkun, Mark D.;
Tóth, Júlia

Publication type:

Article

Dual RNA regulatory control of a Staphylococcus aureus virulence factor.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 4847, doi. 10.1093/nar/gku119

By:

Chabelskaya, Svetlana;
Bordeau, Valérie;
Felden, Brice

Publication type:

Article

ADAR mediates differential expression of polycistronic microRNAs.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 5245, doi. 10.1093/nar/gku145

By:

Chawla, Geetanjali;
Sokol, Nicholas S.

Publication type:

Article

A Bayesian hierarchical model to detect differentially methylated loci from single nucleotide resolution sequencing data.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. e69, doi. 10.1093/nar/gku154

By:

Feng, Hao;
Conneely, Karen N.;
Wu, Hao

Publication type:

Article

5′-O-Methylphosphonate nucleic acids—new modified DNAs that increase the Escherichia coli RNase H cleavage rate of hybrid duplexes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 5378

By:

Šípová, Hana;
Špringer, Tomáš;
Rejman, Dominik;
Šimák, Ondřej;
Petrová, Magdalena;
Novák, Pavel;
Rosenbergová, Šárka;
Páv, Ondřej;
Liboska, Radek;
Barvík, Ivan;
Štěpánek, Josef;
Rosenberg, Ivan;
Homola, Jiří

Publication type:

Article

fourSig: a method for determining chromosomal interactions in 4C-Seq data.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. e68, doi. 10.1093/nar/gku156

By:

Williams, Rex L.;
Starmer, Joshua;
Mugford, Joshua W.;
Calabrese, J. Mauro;
Mieczkowski, Piotr;
Yee, Della;
Magnuson, Terry

Publication type:

Article

Impairing the production of ribosomal RNA activates mammalian target of rapamycin complex 1 signalling and downstream translation factors.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 5083, doi. 10.1093/nar/gku130

By:

Liu, Rui;
Iadevaia, Valentina;
Averous, Julien;
Taylor, Peter M.;
Zhang, Ze;
Proud, Christopher G.

Publication type:

Article

Isoform-level gene signature improves prognostic stratification and accurately classifies glioblastoma subtypes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. e64, doi. 10.1093/nar/gku121

By:

Pal, Sharmistha;
Bi, Yingtao;
Macyszyn, Luke;
Showe, Louise C.;
O'Rourke, Donald M.;
Davuluri, Ramana V.

Publication type:

Article

Strain/species identification in metagenomes using genome-specific markers.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. e67, doi. 10.1093/nar/gku138

By:

Tu, Qichao;
He, Zhili;
Zhou, Jizhong

Publication type:

Article

An improved predictive recognition model for Cys2-His2 zinc finger proteins.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 4800, doi. 10.1093/nar/gku132

By:

Gupta, Ankit;
Christensen, Ryan G.;
Bell, Heather A.;
Goodwin, Mathew;
Patel, Ronak Y.;
Pandey, Manishi;
Enuameh, Metewo Selase;
Rayla, Amy L.;
Zhu, Cong;
Thibodeau-Beganny, Stacey;
Brodsky, Michael H.;
Joung, J. Keith;
Wolfe, Scot A.;
Stormo, Gary D.

Publication type:

Article

Bimodal high-affinity association of Brd4 with murine leukemia virus integrase and mononucleosomes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 4868, doi. 10.1093/nar/gku135

By:

Larue, Ross C.;
Plumb, Matthew R.;
Crowe, Brandon L.;
Shkriabai, Nikoloz;
Sharma, Amit;
DiFiore, Julia;
Malani, Nirav;
Aiyer, Sriram S.;
Roth, Monica J.;
Bushman, Frederic D.;
Foster, Mark P.;
Kvaratskhelia, Mamuka

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 8, p. ii, doi. 10.1093/nar/gku043
Publication type:: Article

Coexistence of bacterial leucyl-tRNA synthetases with archaeal tRNA binding domains that distinguish tRNALeu in the archaeal mode.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 5109, doi. 10.1093/nar/gku108

By:

Fang, Zhi-Peng;
Wang, Meng;
Ruan, Zhi-Rong;
Tan, Min;
Liu, Ru-Juan;
Zhou, Mi;
Zhou, Xiao-Long;
Wang, En-Duo

Publication type:

Article

Estimating differential expression from multiple indicators.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. e72, doi. 10.1093/nar/gku158

By:

Ilmjärv, Sten;
Hundahl, Christian Ansgar;
Reimets, Riin;
Niitsoo, Margus;
Kolde, Raivo;
Vilo, Jaak;
Vasar, Eero;
Luuk, Hendrik

Publication type:

Article

FineSplice, enhanced splice junction detection and quantification: a novel pipeline based on the assessment of diverse RNA-Seq alignment solutions.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. e71, doi. 10.1093/nar/gku166

By:

Gatto, Alberto;
Torroja-Fungairiño, Carlos;
Mazzarotto, Francesco;
Cook, Stuart A.;
Barton, Paul J. R.;
Sánchez-Cabo, Fátima;
Lara-Pezzi, Enrique

Publication type:

Article

ARTD2 activity is stimulated by RNA.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 5072, doi. 10.1093/nar/gku131

By:

Léger, Karolin;
Bär, Dominik;
Savić, Nataša;
Santoro, Raffaella;
Hottiger, Michael O.

Publication type:

Article

TcaR–ssDNA complex crystal structure reveals new DNA binding mechanism of the MarR family proteins.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 5314, doi. 10.1093/nar/gku128

By:

Chang, Yu-Ming;
Ho, Chun-Han;
Chen, Cammy K.-M.;
Maestre-Reyna, Manuel;
Chang-Chien, Masatoshi Weiting;
Wang, Andrew H.-J.

Publication type:

Article

Selective nuclear export of specific classes of mRNA from mammalian nuclei is promoted by GANP.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 5059, doi. 10.1093/nar/gku095

By:

Wickramasinghe, Vihandha O.;
Andrews, Robert;
Ellis, Peter;
Langford, Cordelia;
Gurdon, John B.;
Stewart, Murray;
Venkitaraman, Ashok R.;
Laskey, Ronald A.

Publication type:

Article

Comprehensive analysis of the specificity of transcription activator-like effector nucleases.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 5390, doi. 10.1093/nar/gku155

By:

Juillerat, Alexandre;
Dubois, Gwendoline;
Valton, Julien;
Thomas, Séverine;
Stella, Stefano;
Maréchal, Alan;
Langevin, Stéphanie;
Benomari, Nassima;
Bertonati, Claudia;
Silva, George H.;
Daboussi, Fayza;
Epinat, Jean-Charles;
Montoya, Guillermo;
Duclert, Aymeric;
Duchateau, Philippe

Publication type:

Article

Transcript level and sequence determinants of protein abundance and noise in Escherichia coli.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 4791, doi. 10.1093/nar/gku126

By:

Guimaraes, Joao C.;
Rocha, Miguel;
Arkin, Adam P.

Publication type:

Article

Effect of sequence and metal ions on UVB-induced anti cyclobutane pyrimidine dimer formation in human telomeric DNA sequences.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 5007, doi. 10.1093/nar/gku163

By:

Smith, Jillian E.;
Lu, Chen;
Taylor, John-Stephen

Publication type:

Article

Molecular basis for the wide range of affinity found in Csr/Rsm protein–RNA recognition.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 5332, doi. 10.1093/nar/gku141

By:

Duss, Olivier;
Michel, Erich;
Diarra dit Konté, Nana;
Schubert, Mario;
Allain, Frédéric H.-T.

Publication type:

Article

Quaternary arrangement of an active, native group II intron ribonucleoprotein complex revealed by small-angle X-ray scattering.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 5347, doi. 10.1093/nar/gku140

By:

Gupta, Kushol;
Contreras, Lydia M.;
Smith, Dorie;
Qu, Guosheng;
Huang, Tao;
Spruce, Lynn A.;
Seeholzer, Steven H.;
Belfort, Marlene;
Van Duyne, Gregory D.

Publication type:

Article

Massive parallel-sequencing-based hydroxyl radical probing of RNA accessibility.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. e70, doi. 10.1093/nar/gku167

By:

Kielpinski, Lukasz Jan;
Vinther, Jeppe

Publication type:

Article

Interactions between the non-seed region of siRNA and RNA-binding RLC/RISC proteins, Ago and TRBP, in mammalian cells.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 5256, doi. 10.1093/nar/gku153

By:

Takahashi, Tomoko;
Zenno, Shuhei;
Ishibashi, Osamu;
Takizawa, Toshihiro;
Saigo, Kaoru;
Ui-Tei, Kumiko

Publication type:

Article

Conditional DNA repair mutants enable highly precise genome engineering.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. e62, doi. 10.1093/nar/gku105

By:

Nyerges, Ákos;
Csörgő, Bálint;
Nagy, István;
Latinovics, Dóra;
Szamecz, Béla;
Pósfai, György;
Pál, Csaba

Publication type:

Article

Thioflavin T as a fluorescence light-up probe for G4 formation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. e65, doi. 10.1093/nar/gku111

By:

Renaud de la Faverie, Amandine;
Guédin, Aurore;
Bedrat, Amina;
Yatsunyk, Liliya A.;
Mergny, Jean-Louis

Publication type:

Article

The activation of the decapping enzyme DCP2 by DCP1 occurs on the EDC4 scaffold and involves a conserved loop in DCP1.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 5217, doi. 10.1093/nar/gku129

By:

Chang, Chung-Te;
Bercovich, Natalia;
Loh, Belinda;
Jonas, Stefanie;
Izaurralde, Elisa

Publication type:

Article

Sumoylation of the THO complex regulates the biogenesis of a subset of mRNPs.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 5043, doi. 10.1093/nar/gku124

By:

Bretes, Hugo;
Rouviere, Jérôme O.;
Leger, Thibaut;
Oeffinger, Marlene;
Devaux, Frédéric;
Doye, Valérie;
Palancade, Benoit

Publication type:

Article

Tissue specific CTCF occupancy and boundary function at the human growth hormone locus.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 4906, doi. 10.1093/nar/gku139

By:

Tsai, Yu-Cheng;
Cooke, Nancy E.;
Liebhaber, Stephen A.

Publication type:

Article

Rapid identification of regulatory microRNAs by miTRAP (miRNA trapping by RNA in vitro affinity purification).

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. e66, doi. 10.1093/nar/gku127

By:

Braun, Juliane;
Misiak, Danny;
Busch, Bianca;
Krohn, Knut;
Hüttelmaier, Stefan

Publication type:

Article

In vitro assembly and activity of an archaeal CRISPR-Cas type I-A Cascade interference complex.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 5125, doi. 10.1093/nar/gku120

By:

Plagens, André;
Tripp, Vanessa;
Daume, Michael;
Sharma, Kundan;
Klingl, Andreas;
Hrle, Ajla;
Conti, Elena;
Urlaub, Henning;
Randau, Lennart

Publication type:

Article

Explaining the correlations among properties of mammalian promoters.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 4823

By:

Frith, Martin C.

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 8, p. i, doi. 10.1093/nar/gku015
Publication type:: Article

Deciphering the rules by which dynamics of mRNA secondary structure affect translation efficiency in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 4813, doi. 10.1093/nar/gku159

By:

Mao, Yuanhui;
Liu, HuiLing;
Liu, Yanlin;
Tao, Shiheng

Publication type:

Article

Archaeal aminoacyl-tRNA synthetases interact with the ribosome to recycle tRNAs.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 5191, doi. 10.1093/nar/gku164

By:

Godinic-Mikulcic, Vlatka;
Jaric, Jelena;
Greber, Basil J.;
Franke, Vedran;
Hodnik, Vesna;
Anderluh, Gregor;
Ban, Nenad;
Weygand-Durasevic, Ivana

Publication type:

Article

Fuzziness and noise in nucleosomal architecture.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 4934, doi. 10.1093/nar/gku165

By:

Flores, Oscar;
Deniz, Özgen;
Soler-López, Montserrat;
Orozco, Modesto

Publication type:

Article