Works matching IS 03051048 AND DT 2014 AND VI 42 AND IP 7

Results: 64

Persistently stalled replication forks inhibit nucleotide excision repair in trans by sequestering Replication protein A.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4406, doi. 10.1093/nar/gkt1412

By:

Tsaalbi-Shtylik, Anastasia;
Moser, Jill;
Mullenders, Leon H. F.;
Jansen, Jacob G.;
de Wind, Niels

Publication type:

Article

DNA-PKcs is required to maintain stability of Chk1 and Claspin for optimal replication stress response.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4463, doi. 10.1093/nar/gku116

By:

Lin, Yu-Fen;
Shih, Hung-Ying;
Shang, Zengfu;
Matsunaga, Shinji;
Chen, Benjamin PC

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 7, p. i, doi. 10.1093/nar/gku015
Publication type:: Article

Structure of a rare non-standard sequence k-turn bound by L7Ae protein.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4734, doi. 10.1093/nar/gku087

By:

Huang, Lin;
Lilley, David M.J.

Publication type:

Article

An antisense promoter in mouse L1 retrotransposon open reading frame-1 initiates expression of diverse fusion transcripts and limits retrotransposition.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4546, doi. 10.1093/nar/gku091

By:

Li, Jingfeng;
Kannan, Manoj;
Trivett, Anna L.;
Liao, Hongling;
Wu, Xiaolin;
Akagi, Keiko;
Symer, David E.

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 7, p. iii, doi. 10.1093/nar/gku065
Publication type:: Article

Trypanosome MKT1 and the RNA-binding protein ZC3H11: interactions and potential roles in post-transcriptional regulatory networks.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4652, doi. 10.1093/nar/gkt1416

By:

Singh, Aditi;
Minia, Igor;
Droll, Dorothea;
Fadda, Abeer;
Clayton, Christine;
Erben, Esteban

Publication type:

Article

Design and application of cotranscriptional non-enzymatic RNA circuits and signal transducers.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. e58, doi. 10.1093/nar/gku074

By:

Bhadra, Sanchita;
Ellington, Andrew D.

Publication type:

Article

Coordinated repressive chromatin-remodeling of Oct4 and Nanog genes in RA-induced differentiation of embryonic stem cells involves RIP140.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4306, doi. 10.1093/nar/gku092

By:

Wu, Cheng-Ying;
Feng, Xudong;
Wei, Li-Na

Publication type:

Article

Physical constraints determine the logic of bacterial promoter architectures.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4196, doi. 10.1093/nar/gku078

By:

Ezer, Daphne;
Zabet, Nicolae Radu;
Adryan, Boris

Publication type:

Article

Distinct functions of the RNA polymerase σ subunit region 3.2 in RNA priming and promoter escape.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4494, doi. 10.1093/nar/gkt1384

By:

Pupov, Danil;
Kuzin, Ivan;
Bass, Irina;
Kulbachinskiy, Andrey

Publication type:

Article

DAXX co-folds with H3.3/H4 using high local stability conferred by the H3.3 variant recognition residues.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4318, doi. 10.1093/nar/gku090

By:

DeNizio, Jamie E.;
Elsässer, Simon J.;
Black, Ben E.

Publication type:

Article

Structure-function analysis of the Yhc1 subunit of yeast U1 snRNP and genetic interactions of Yhc1 with Mud2, Nam8, Mud1, Tgs1, U1 snRNA, SmD3 and Prp28.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4697, doi. 10.1093/nar/gku097

By:

Schwer, Beate;
Shuman, Stewart

Publication type:

Article

Androgen receptor uses relaxed response element stringency for selective chromatin binding and transcriptional regulation in vivo.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4230, doi. 10.1093/nar/gkt1401

By:

Sahu, Biswajyoti;
Pihlajamaa, Päivi;
Dubois, Vanessa;
Kerkhofs, Stefanie;
Claessens, Frank;
Jänne, Olli A.

Publication type:

Article

Expanding the zinc-finger recombinase repertoire: directed evolution and mutational analysis of serine recombinase specificity determinants.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4755, doi. 10.1093/nar/gkt1389

By:

Sirk, Shannon J.;
Gaj, Thomas;
Jonsson, Andreas;
Mercer, Andrew C.;
Barbas, Carlos F.

Publication type:

Article

Super-resolution optical DNA Mapping via DNA methyltransferase-directed click chemistry.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. e50, doi. 10.1093/nar/gkt1406

By:

Vranken, Charlotte;
Deen, Jochem;
Dirix, Lieve;
Stakenborg, Tim;
Dehaen, Wim;
Leen, Volker;
Hofkens, Johan;
Neely, Robert K.

Publication type:

Article

Computational modeling identifies key gene regulatory interactions underlying phenobarbital-mediated tumor promotion.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4180, doi. 10.1093/nar/gkt1415

By:

Luisier, Raphaëlle;
Unterberger, Elif B.;
Goodman, Jay I.;
Schwarz, Michael;
Moggs, Jonathan;
Terranova, Rémi;
van Nimwegen, Erik

Publication type:

Article

The influence of CpG and UpA dinucleotide frequencies on RNA virus replication and characterization of the innate cellular pathways underlying virus attenuation and enhanced replication.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4527, doi. 10.1093/nar/gku075

By:

Atkinson, Nicky J.;
Witteveldt, Jeroen;
Evans, David J.;
Simmonds, Peter

Publication type:

Article

BswR controls bacterial motility and biofilm formation in Pseudomonas aeruginosa through modulation of the small RNA rsmZ.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4563, doi. 10.1093/nar/gku106

By:

Wang, Chao;
Ye, Fuzhou;
Kumar, Veerendra;
Gao, Yong-Gui;
Zhang, Lian-Hui

Publication type:

Article

Interplay between pre-mRNA splicing and microRNA biogenesis within the supraspliceosome.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4640, doi. 10.1093/nar/gkt1413

By:

Agranat-Tamir, Lily;
Shomron, Noam;
Sperling, Joseph;
Sperling, Ruth

Publication type:

Article

Aptamer-guided gene targeting in yeast and human cells.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. e61, doi. 10.1093/nar/gku101

By:

Ruff, Patrick;
Koh, Kyung Duk;
Keskin, Havva;
Pai, Rekha B.;
Storici, Francesca

Publication type:

Article

MLV integration site selection is driven by strong enhancers and active promoters.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4257, doi. 10.1093/nar/gkt1399

By:

LaFave, Matthew C.;
Varshney, Gaurav K.;
Gildea, Derek E.;
Wolfsberg, Tyra G.;
Baxevanis, Andreas D.;
Burgess, Shawn M.

Publication type:

Article

Differential RISC association of endogenous human microRNAs predicts their inhibitory potential.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4629, doi. 10.1093/nar/gkt1393

By:

Flores, Omar;
Kennedy, Edward M.;
Skalsky, Rebecca L.;
Cullen, Bryan R.

Publication type:

Article

The crystal structure of TDP-43 RRM1-DNA complex reveals the specific recognition for UG- and TG-rich nucleic acids.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4712, doi. 10.1093/nar/gkt1407

By:

Kuo, Pan-Hsien;
Chiang, Chien-Hao;
Wang, Yi-Ting;
Doudeva, Lyudmila G.;
Yuan, Hanna S.

Publication type:

Article

A knowledge-based scoring function for protein-RNA interactions derived from a statistical mechanics-based iterative method.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. e55, doi. 10.1093/nar/gku077

By:

Huang, Sheng-You;
Zou, Xiaoqin

Publication type:

Article

A phylogenomics approach for selecting robust sets of phylogenetic markers.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. e54, doi. 10.1093/nar/gku071

By:

Capella-Gutierrez, Salvador;
Kauff, Frank;
Gabaldón, Toni

Publication type:

Article

The transcript elongation factor SPT4/SPT5 is involved in auxin-related gene expression in Arabidopsis.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4332, doi. 10.1093/nar/gku096

By:

Dürr, Julius;
Lolas, Ihab B.;
Sørensen, Brian B.;
Schubert, Veit;
Houben, Andreas;
Melzer, Michael;
Deutzmann, Rainer;
Grasser, Marion;
Grasser, Klaus D.

Publication type:

Article

Adjacent single-stranded regions mediate processing of tRNA precursors by RNase E direct entry.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4577, doi. 10.1093/nar/gkt1403

By:

Kime, Louise;
Clarke, Justin E.;
Romero A., David;
Grasby, Jane A.;
McDowall, Kenneth J.

Publication type:

Article

Structural basis of sodium–potassium exchange of a human telomeric DNA quadruplex without topological conversion.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4723, doi. 10.1093/nar/gku083

By:

Wang, Zi-Fu;
Li, Ming-Hao;
Hsu, Shang-Te Danny;
Chang, Ta-Chau

Publication type:

Article

The hematopoietic regulator TAL1 is required for chromatin looping between the β-globin LCR and human γ-globin genes to activate transcription.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4283, doi. 10.1093/nar/gku072

By:

Yun, Won Ju;
Kim, Yea Woon;
Kang, Yujin;
Lee, Jungbae;
Dean, Ann;
Kim, AeRi

Publication type:

Article

Modulation of ATR-mediated DNA damage checkpoint response by cryptochrome 1.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4427, doi. 10.1093/nar/gku094

By:

Kang, Tae-Hong;
Leem, Sun-Hee

Publication type:

Article

Stepwise assembly of multiple Lin28 proteins on the terminal loop of let-7 miRNA precursors.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4615, doi. 10.1093/nar/gkt1391

By:

Desjardins, Alexandre;
Bouvette, Jonathan;
Legault, Pascale

Publication type:

Article

The RSC chromatin remodeling complex has a crucial role in the complete remodeler set for yeast PHO5 promoter opening.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4270, doi. 10.1093/nar/gkt1395

By:

Musladin, Sanja;
Krietenstein, Nils;
Korber, Philipp;
Barbaric, Slobodan

Publication type:

Article

PARP1–TDP1 coupling for the repair of topoisomerase I–induced DNA damage.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4435, doi. 10.1093/nar/gku088

By:

Das, Benu Brata;
Huang, Shar-yin N.;
Murai, Junko;
Rehman, Ishita;
Amé, Jean-Christophe;
Sengupta, Souvik;
Das, Subhendu K.;
Majumdar, Papiya;
Zhang, Hongliang;
Biard, Denis;
Majumder, Hemanta K.;
Schreiber, Valérie;
Pommier, Yves

Publication type:

Article

The RNase H-like superfamily: new members, comparative structural analysis and evolutionary classification.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4160, doi. 10.1093/nar/gkt1414

By:

Majorek, Karolina A.;
Dunin-Horkawicz, Stanislaw;
Steczkiewicz, Kamil;
Muszewska, Anna;
Nowotny, Marcin;
Ginalski, Krzysztof;
Bujnicki, Janusz M.

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 7, p. ii, doi. 10.1093/nar/gku042
Publication type:: Article

A ribozyme that triphosphorylates RNA 5′-hydroxyl groups.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4767, doi. 10.1093/nar/gkt1405

By:

Moretti, Janina E.;
Müller, Ulrich F.

Publication type:

Article

Correction of sequence-dependent ambiguous bases (Ns) from the 454 pyrosequencing system.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. e51, doi. 10.1093/nar/gku070

By:

Shin, Sunguk;
Park, Joonhong

Publication type:

Article

Chromosome positioning from activity-based segregation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4145, doi. 10.1093/nar/gkt1417

By:

Ganai, Nirmalendu;
Sengupta, Surajit;
Menon, Gautam I.

Publication type:

Article

Alternative Lengthening of Telomeres is characterized by reduced compaction of telomeric chromatin.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4391, doi. 10.1093/nar/gku114

By:

Episkopou, Harikleia;
Draskovic, Irena;
Van Beneden, Amandine;
Tilman, Gaëlle;
Mattiussi, Marina;
Gobin, Matthieu;
Arnoult, Nausica;
Londoño-Vallejo, Arturo;
Decottignies, Anabelle

Publication type:

Article

A dual promoter system regulating λ DNA replication initiation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4450, doi. 10.1093/nar/gku103

By:

Olszewski, Paweł;
Szambowska, Anna;
Barańska, Sylwia;
Narajczyk, Magdalena;
Węgrzyn, Grzegorz;
Glinkowska, Monika

Publication type:

Article

MLL fusion proteins link transcriptional coactivators to previously active CpG-rich promoters.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4241, doi. 10.1093/nar/gkt1394

By:

Okuda, Hiroshi;
Kawaguchi, Marie;
Kanai, Akinori;
Matsui, Hirotaka;
Kawamura, Takeshi;
Inaba, Toshiya;
Kitabayashi, Issay;
Yokoyama, Akihiko

Publication type:

Article

Constructing module maps for integrated analysis of heterogeneous biological networks.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4208, doi. 10.1093/nar/gku102

By:

Amar, David;
Shamir, Ron

Publication type:

Article

Dissecting the function of the adult β-globin downstream promoter region using an artificial zinc finger DNA-binding domain.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4363, doi. 10.1093/nar/gku107

By:

Barrow, Joeva J.;
Li, Ying;
Hossain, Mir;
Huang, Suming;
Bungert, Jörg

Publication type:

Article

The α isoform of topoisomerase II is required for hypercompaction of mitotic chromosomes in human cells.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4414, doi. 10.1093/nar/gku076

By:

Farr, Christine J.;
Antoniou-Kourounioti, Melissa;
Mimmack, Michael L.;
Volkov, Arsen;
Porter, Andrew C. G.

Publication type:

Article

Hunting complex differential gene interaction patterns across molecular contexts.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. e57, doi. 10.1093/nar/gku086

By:

Song, Mingzhou;
Zhang, Yang;
Katzaroff, Alexia J.;
Edgar, Bruce A.;
Buttitta, Laura

Publication type:

Article

Functional signature for the recognition of specific target mRNAs by human Staufen1 protein.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4516, doi. 10.1093/nar/gku073

By:

de Lucas, Susana;
Oliveros, Juan Carlos;
Chagoyen, Mónica;
Ortín, Juan

Publication type:

Article

EDDY: a novel statistical gene set test method to detect differential genetic dependencies.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. e60, doi. 10.1093/nar/gku099

By:

Jung, Sungwon;
Kim, Seungchan

Publication type:

Article

The omega subunit of the RNA polymerase core directs transcription efficiency in cyanobacteria.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4606, doi. 10.1093/nar/gku084

By:

Gunnelius, Liisa;
Hakkila, Kaisa;
Kurkela, Juha;
Wada, Hajime;
Tyystjärvi, Esa;
Tyystjärvi, Taina

Publication type:

Article

A widespread bacteriophage abortive infection system functions through a Type IV toxin–antitoxin mechanism.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4590, doi. 10.1093/nar/gkt1419

By:

Dy, Ron L.;
Przybilski, Rita;
Semeijn, Koen;
Salmond, George P.C.;
Fineran, Peter C.

Publication type:

Article