Works matching IS 03051048 AND DT 2014 AND VI 42 AND IP 6

Results: 69

Immortality, but not oncogenic transformation, of primary human cells leads to epigenetic reprogramming of DNA methylation and gene expression.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3529, doi. 10.1093/nar/gkt1351

By:

Gordon, Katrina;
Clouaire, Thomas;
Bao, Xun X.;
Kemp, Sadie E.;
Xenophontos, Maria;
de Las Heras, Jose Ignacio;
Stancheva, Irina

Publication type:

Article

Single molecule analysis of Thermus thermophilus SSB protein dynamics on single-stranded DNA.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3821, doi. 10.1093/nar/gkt1316

By:

Zhang, Jichuan;
Zhou, Ruobo;
Inoue, Jin;
Mikawa, Tsutomu;
Ha, Taekjip

Publication type:

Article

Carbon source-dependent alteration of Puf3p activity mediates rapid changes in the stabilities of mRNAs involved in mitochondrial function.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3954, doi. 10.1093/nar/gkt1346

By:

Miller, Melanie A.;
Russo, Joseph;
Fischer, Anthony D.;
Lopez Leban, Florencia A.;
Olivas, Wendy M.

Publication type:

Article

Dicer-related helicase 3 forms an obligate dimer for recognizing 22G-RNA.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3919, doi. 10.1093/nar/gkt1383

By:

Fitzgerald, Megan E.;
Vela, Adriana;
Pyle, Anna Marie

Publication type:

Article

Transcriptome analysis of alternative splicing events regulated by SRSF10 reveals position-dependent splicing modulation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 4019, doi. 10.1093/nar/gkt1387

By:

Zhou, Xuexia;
Wu, Wenwu;
Li, Huang;
Cheng, Yuanming;
Wei, Ning;
Zong, Jie;
Feng, Xiaoyan;
Xie, Zhiqin;
Chen, Dai;
Manley, James L.;
Wang, Hui;
Feng, Ying

Publication type:

Article

Identification of histone 3 variant 2 interacting factors.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3542, doi. 10.1093/nar/gkt1355

By:

Latreille, Daniel;
Bluy, Lisa;
Benkirane, Monsef;
Kiernan, Rosemary E.

Publication type:

Article

Active site plasticity enables metal-dependent tuning of Cas5d nuclease activity in CRISPR-Cas type I-C system.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3846, doi. 10.1093/nar/gkt1335

By:

Punetha, Ankita;
Sivathanu, Raveendran;
Anand, Baskaran

Publication type:

Article

Synthetic biology tools for programming gene expression without nutritional perturbations in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. e48, doi. 10.1093/nar/gkt1402

By:

McIsaac, R. Scott;
Gibney, Patrick A.;
Chandran, Sunil S.;
Benjamin, Kirsten R.;
Botstein, David

Publication type:

Article

An arginine-aspartate network in the active site of bacterial TruB is critical for catalyzing pseudouridine formation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3857, doi. 10.1093/nar/gkt1331

By:

Friedt, Jenna;
Leavens, Fern M. V.;
Mercier, Evan;
Wieden, Hans-Joachim;
Kothe, Ute

Publication type:

Article

The amino terminal extension of mammalian mitochondrial RNA polymerase ensures promoter specific transcription initiation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3638, doi. 10.1093/nar/gkt1397

By:

Posse, Viktor;
Hoberg, Emily;
Dierckx, Anke;
Shahzad, Saba;
Koolmeister, Camilla;
Larsson, Nils-Göran;
Wilhelmsson, L. Marcus;
Hällberg, B. Martin;
Gustafsson, Claes M.

Publication type:

Article

RecA-dependent programmable endonuclease Ref cleaves DNA in two distinct steps.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3871, doi. 10.1093/nar/gkt1342

By:

Ronayne, Erin A.;
Cox, Michael M.

Publication type:

Article

Structural integrity of the PCI domain of eIF3a/TIF32 is required for mRNA recruitment to the 43S pre-initiation complexes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 4123, doi. 10.1093/nar/gkt1369

By:

Khoshnevis, Sohail;
Gunišová, Stanislava;
Vlčková, Vladislava;
Kouba, Tomáš;
Neumann, Piotr;
Beznosková, Petra;
Ficner, Ralf;
Valášek, Leoš Shivaya

Publication type:

Article

Bisulfighter: accurate detection of methylated cytosines and differentially methylated regions.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. e45, doi. 10.1093/nar/gkt1373

By:

Saito, Yutaka;
Tsuji, Junko;
Mituyama, Toutai

Publication type:

Article

LSD1 cooperates with CTIP2 to promote HIV-1 transcriptional silencing.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 4141, doi. 10.1093/nar/gkt1017

By:

Douce, Valentin Le;
Colin, Laurence;
Redel, Laetitia;
Cherrier, Thomas;
Herbein, Georges;
Aunis, Dominique;
Rohr, Olivier;
Lint, Carine Van;
Schwartz, Christian

Publication type:

Article

Incorporation of thio-pseudoisocytosine into triplex-forming peptide nucleic acids for enhanced recognition of RNA duplexes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 4008, doi. 10.1093/nar/gkt1367

By:

Devi, Gitali;
Yuan, Zhen;
Lu, Yunpeng;
Zhao, Yanli;
Chen, Gang

Publication type:

Article

SAPTA: a new design tool for improving TALE nuclease activity.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. e47, doi. 10.1093/nar/gkt1363

By:

Lin, Yanni;
Fine, Eli J.;
Zheng, Zhilan;
Antico, Christopher J.;
Voit, Richard A.;
Porteus, Matthew H.;
Cradick, Thomas J.;
Bao, Gang

Publication type:

Article

Cellular localization and dynamics of the Mrr type IV restriction endonuclease of Escherichia coli.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3908, doi. 10.1093/nar/gkt1370

By:

Ghosh, Anirban;
Passaris, Ioannis;
Tesfazgi Mebrhatu, Mehari;
Rocha, Susana;
Vanoirbeek, Kristof;
Hofkens, Johan;
Aertsen, Abram

Publication type:

Article

Structure modulation of helix 69 from Escherichia coli 23S ribosomal RNA by pseudouridylations.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3971, doi. 10.1093/nar/gkt1329

By:

Jiang, Jun;
Aduri, Raviprasad;
Chow, Christine S.;
SantaLucia, John

Publication type:

Article

Checkpoint kinase 1 negatively regulates somatic hypermutation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3666, doi. 10.1093/nar/gkt1378

By:

Frankenberger, Samantha;
Davari, Kathrin;
Fischer-Burkart, Sabine;
Böttcher, Katrin;
Tomi, Nils-Sebastian;
Zimber-Strobl, Ursula;
Jungnickel, Berit

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 6, p. iii, doi. 10.1093/nar/gku064
Publication type:: Article

Binary recombinase systems for high-resolution conditional mutagenesis.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3894, doi. 10.1093/nar/gkt1361

By:

Hermann, Mario;
Stillhard, Patrick;
Wildner, Hendrik;
Seruggia, Davide;
Kapp, Viktor;
Sánchez-Iranzo, Héctor;
Mercader, Nadia;
Montoliu, Lluís;
Zeilhofer, Hanns Ulrich;
Pelczar, Pawel

Publication type:

Article

Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. e46, doi. 10.1093/nar/gkt1376

By:

Akama, Satoru;
Shimizu-Inatsugi, Rie;
Shimizu, Kentaro K.;
Sese, Jun

Publication type:

Article

Substrate specificity of the MUS81-EME2 structure selective endonuclease.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3833, doi. 10.1093/nar/gkt1333

By:

Pepe, Alessandra;
West, Stephen C.

Publication type:

Article

The structure of metallo-DNA with consecutive thymine–HgII–thymine base pairs explains positive entropy for the metallo base pair formation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 4094, doi. 10.1093/nar/gkt1344

By:

Yamaguchi, Hiroshi;
Šebera, Jakub;
Kondo, Jiro;
Oda, Shuji;
Komuro, Tomoyuki;
Kawamura, Takuya;
Dairaku, Takenori;
Kondo, Yoshinori;
Okamoto, Itaru;
Ono, Akira;
Burda, Jaroslav V.;
Kojima, Chojiro;
Sychrovský, Vladimír;
Tanaka, Yoshiyuki

Publication type:

Article

Distinct tRNA recognition strategies used by a homologous family of editing domains prevent mistranslation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3943, doi. 10.1093/nar/gkt1332

By:

Das, Mom;
Vargas-Rodriguez, Oscar;
Goto, Yuki;
Suga, Hiroaki;
Musier-Forsyth, Karin

Publication type:

Article

Sugar-modified G-quadruplexes: effects of LNA-, 2′F-RNA– and 2′F-ANA-guanosine chemistries on G-quadruplex structure and stability.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 4068, doi. 10.1093/nar/gkt1312

By:

Li, Zhe;
Lech, Christopher Jacques;
Phan, Anh Tuân

Publication type:

Article

Comparison and quantitative verification of mapping algorithms for whole-genome bisulfite sequencing.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. e43, doi. 10.1093/nar/gkt1325

By:

Kunde-Ramamoorthy, Govindarajan;
Coarfa, Cristian;
Laritsky, Eleonora;
Kessler, Noah J.;
Harris, R. Alan;
Xu, Mingchu;
Chen, Rui;
Shen, Lanlan;
Milosavljevic, Aleksandar;
Waterland, Robert A.

Publication type:

Article

p54nrb/NonO and PSF promote U snRNA nuclear export by accelerating its export complex assembly.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3998, doi. 10.1093/nar/gkt1365

By:

Izumi, Hiroto;
McCloskey, Asako;
Shinmyozu, Kaori;
Ohno, Mutsuhito

Publication type:

Article

Determinants of expression variability.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3503, doi. 10.1093/nar/gkt1364

By:

Alemu, Elfalem Y.;
Carl, Joseph W.;
Corrada Bravo, Héctor;
Hannenhalli, Sridhar

Publication type:

Article

A highly divergent archaeo-eukaryotic primase from the Thermococcus nautilus plasmid, pTN2.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3707, doi. 10.1093/nar/gkt1385

By:

Gill, Sukhvinder;
Krupovic, Mart;
Desnoues, Nicole;
Béguin, Pierre;
Sezonov, Guennadi;
Forterre, Patrick

Publication type:

Article

The light-induced transcriptome of the zebrafish pineal gland reveals complex regulation of the circadian clockwork by light.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3750, doi. 10.1093/nar/gkt1359

By:

Ben-Moshe, Zohar;
Alon, Shahar;
Mracek, Philipp;
Faigenbloom, Lior;
Tovin, Adi;
Vatine, Gad D.;
Eisenberg, Eli;
Foulkes, Nicholas S.;
Gothilf, Yoav

Publication type:

Article

Length-dependent processing of telomeres in the absence of telomerase.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3648, doi. 10.1093/nar/gkt1328

By:

Fallet, Emilie;
Jolivet, Pascale;
Soudet, Julien;
Lisby, Michael;
Gilson, Eric;
Teixeira, Maria Teresa

Publication type:

Article

Structural insight into the specificity of the B3 DNA-binding domains provided by the co-crystal structure of the C-terminal fragment of BfiI restriction enzyme.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 4113, doi. 10.1093/nar/gkt1368

By:

Golovenko, Dmitrij;
Manakova, Elena;
Zakrys, Linas;
Zaremba, Mindaugas;
Sasnauskas, Giedrius;
Gražulis, Saulius;
Siksnys, Virginijus

Publication type:

Article

RNase L restricts the mobility of engineered retrotransposons in cultured human cells.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3803, doi. 10.1093/nar/gkt1308

By:

Zhang, Ao;
Dong, Beihua;
Doucet, Aurélien J.;
Moldovan, John B.;
Moran, John V.;
Silverman, Robert H.

Publication type:

Article

The PR-Set7 binding domain of Riz1 is required for the H4K20me1-H3K9me1 trans-tail ‘histone code’ and Riz1 tumor suppressor function.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3580, doi. 10.1093/nar/gkt1377

By:

Congdon, Lauren M.;
Sims, Jennifer K.;
Tuzon, Creighton T.;
Rice, Judd C.

Publication type:

Article

An integrated framework for discovery and genotyping of genomic variants from high-throughput sequencing experiments.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. e44, doi. 10.1093/nar/gkt1381

By:

Duitama, Jorge;
Quintero, Juan Camilo;
Cruz, Daniel Felipe;
Quintero, Constanza;
Hubmann, Georg;
Foulquié-Moreno, Maria R.;
Verstrepen, Kevin J.;
Thevelein, Johan M.;
Tohme, Joe

Publication type:

Article

LORD-Q: a long-run real-time PCR-based DNA-damage quantification method for nuclear and mitochondrial genome analysis.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. e41, doi. 10.1093/nar/gkt1349

By:

Lehle, Simon;
Hildebrand, Dominic G.;
Merz, Britta;
Malak, Peter N.;
Becker, Michael S.;
Schmezer, Peter;
Essmann, Frank;
Schulze-Osthoff, Klaus;
Rothfuss, Oliver

Publication type:

Article

Multiple-binding-site mechanism explains concentration-dependent unbinding rates of DNA-binding proteins.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3783, doi. 10.1093/nar/gkt1327

By:

Sing, Charles E.;
Olvera de la Cruz, Monica;
Marko, John F.

Publication type:

Article

Mutational analysis of the HIV-1 auxiliary protein Vif identifies independent domains important for the physical and functional interaction with HIV-1 reverse transcriptase.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 4144, doi. 10.1093/nar/gku195

By:

Kataropoulou, Alexandra;
Bovolenta, Chiara;
Belfiore, Amalia;
Trabatti, Sonia;
Garbelli, Anna;
Porcellini, Simona;
Lupo, Rossella;
Maga, Giovanni

Publication type:

Article

Targeting and tracing of specific DNA sequences with dTALEs in living cells.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. e38, doi. 10.1093/nar/gkt1348

By:

Thanisch, Katharina;
Schneider, Katrin;
Morbitzer, Robert;
Solovei, Irina;
Lahaye, Thomas;
Bultmann, Sebastian;
Leonhardt, Heinrich

Publication type:

Article

CpG domains downstream of TSSs promote high levels of gene expression.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3551, doi. 10.1093/nar/gkt1358

By:

Krinner, Simone;
Heitzer, Asli P.;
Diermeier, Sarah D.;
Obermeier, Ingrid;
Längst, Gernot;
Wagner, Ralf

Publication type:

Article

G-Quadruplex binding enantiomers show chiral selective interactions with human telomere.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3792, doi. 10.1093/nar/gkt1354

By:

Wang, Jiasi;
Chen, Yong;
Ren, Jinsong;
Zhao, Chuanqi;
Qu, Xiaogang

Publication type:

Article

Redirecting splicing with bifunctional oligonucleotides.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. e40, doi. 10.1093/nar/gkt1287

By:

Brosseau, Jean-Philippe;
Lucier, Jean-François;
Lamarche, Andrée-Anne;
Shkreta, Lulzim;
Gendron, Daniel;
Lapointe, Elvy;
Thibault, Philippe;
Paquet, Éric;
Perreault, Jean-Pierre;
Abou Elela, Sherif;
Chabot, Benoit

Publication type:

Article

A dynamic alternative splicing program regulates gene expression during terminal erythropoiesis.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 4031, doi. 10.1093/nar/gkt1388

By:

Pimentel, Harold;
Parra, Marilyn;
Gee, Sherry;
Ghanem, Dana;
An, Xiuli;
Li, Jie;
Mohandas, Narla;
Pachter, Lior;
Conboy, John G.

Publication type:

Article

The methylomes of six bacteria.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 4140, doi. 10.1093/nar/gkt1357

By:

Murray, Iain A.;
Clark, Tyson A.;
Morgan, Richard D.;
Boitano, Matthew;
Anton, Brian P.;
Luong, Khai;
Fomenkov, Alexey;
Turner, Stephen W.;
Korlach, Jonas;
Roberts, Richard J.

Publication type:

Article

Solution structure and tandem DNA recognition of the C-terminal effector domain of PmrA from Klebsiella pneumoniae.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 4080, doi. 10.1093/nar/gkt1345

By:

Lou, Yuan-Chao;
Wang, Iren;
Rajasekaran, M.;
Kao, Yi-Fen;
Ho, Meng-Ru;
Hsu, Shang-Te Danny;
Chou, Shan-Ho;
Wu, Shih-Hsiung;
Chen, Chinpan

Publication type:

Article

Converging pathways involving microRNA-206 and the RNA-binding protein KSRP control post-transcriptionally utrophin A expression in skeletal muscle.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3982, doi. 10.1093/nar/gkt1350

By:

Amirouche, Adel;
Tadesse, Helina;
Miura, Pedro;
Bélanger, Guy;
Lunde, John A.;
Côté, Jocelyn;
Jasmin, Bernard J.

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 6, p. ii, doi. 10.1093/nar/gku041
Publication type:: Article

PIP degron proteins, substrates of CRL4Cdt2, and not PIP boxes, interfere with DNA polymerase η and κ focus formation on UV damage.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 3692, doi. 10.1093/nar/gkt1400

By:

Tsanov, Nikolay;
Kermi, Chames;
Coulombe, Philippe;
Van der Laan, Siem;
Hodroj, Dana;
Maiorano, Domenico

Publication type:

Article

Organization of the human mitochondrial transcription initiation complex.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 6, p. 4100, doi. 10.1093/nar/gkt1360

By:

Yakubovskaya, Elena;
Guja, Kip E.;
Eng, Edward T.;
Choi, Woo Suk;
Mejia, Edison;
Beglov, Dmitri;
Lukin, Mark;
Kozakov, Dima;
Garcia-Diaz, Miguel

Publication type:

Article