Works matching IS 03051048 AND DT 2014 AND VI 42 AND IP 3

Results: 79

The FurA regulon in Anabaena sp. PCC 7120: in silico prediction and experimental validation of novel target genes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1, doi. 10.1093/nar/gku123

By:

González, Andrés;
Espinosa Angarica, Vladimir;
Sancho, Javier;
Fillat, María F.

Publication type:

Article

EDDY: a novel statistical gene set test method to detect differential genetic dependencies.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1, doi. 10.1093/nar/gku099

By:

Sungwon Jung;
Seungchan Kim

Publication type:

Article

Structural insights into the dimerization of the response regulator ComE from Streptococcus pneumoniae.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1, doi. 10.1093/nar/gku110

By:

Boudes, Marion;
Sanchez, Dyana;
Graille, Marc;
van Tilbeurgh, Herman;
Durand, Dominique;
Quevillon-Cheruel, Sophie

Publication type:

Article

Ribonuclease L and metal-ion-independent endoribonuclease cleavage sites in host and viral RNAs.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1, doi. 10.1093/nar/gku118

By:

Cooper, Daphne A.;
Jha, Babal K.;
Silverman, Robert H.;
Hesselberth, Jay R.;
Barton, David J.

Publication type:

Article

Isoform-level gene signature improves prognostic stratification and accurately classifies glioblastoma subtypes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1, doi. 10.1093/nar/gku121

By:

Pal, Sharmistha;
Yingtao Bi;
Macyszyn, Luke;
Showe, Louise C.;
O'Rourke, Donald M.;
Davuluri, Ramana V.

Publication type:

Article

In vitro assembly and activity of an archaeal CRISPR-Cas type I-A Cascade interference complex.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1, doi. 10.1093/nar/gku120

By:

Plagens, André;
Tripp, Vanessa;
Daume, Michael;
Sharma, Kundan;
Klingl, Andreas;
Hrle, Ajla;
Conti, Elena;
Urlaub, Henning;
Randau, Lennart

Publication type:

Article

Sumoylation of the THO complex regulates the biogenesis of a subset of mRNPs.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1, doi. 10.1093/nar/gku124

By:

Bretes, Hugo;
Rouviere, Jérôme O.;
Leger, Thibaut;
Oeffinger, Marlene;
Devaux, Frédéric;
Doye, Valérie;
Palancade, Benoit

Publication type:

Article

DNA-PKcs is required to maintain stability of Chk1 and Claspin for optimal replication stress response.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1, doi. 10.1093/nar/gku116

By:

Yu-Fen Lin;
Hung-Ying Shih;
Zengfu Shang;
Shinji Matsunaga;
C. Chen, Benjamin P.

Publication type:

Article

Direct activation of human and mouse Oct4 genes using engineered TALE and Cas9 transcription factors.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1, doi. 10.1093/nar/gku109

By:

Jiabiao Hu;
Yong Lei;
Wing-Ki Wong;
Senquan Liu;
Kai-Chuen Lee;
Xiangjun He;
Wenxing You;
Rui Zhou;
Jun-Tao Guo;
Xiongfong Chen;
Xianlu Peng;
Hao Sun;
He Huang;
Hui Zhao;
Bo Feng

Publication type:

Article

Conditional DNA repair mutants enable highly precise genome engineering.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1, doi. 10.1093/nar/gku105

By:

Nyerges, Ákos;
Csörgő, Bálint;
Nagy, István;
Latinovics, Dó ra;
Szamecz, Béla;
Pósfai, György;
Pál, Csaba

Publication type:

Article

Coexistence of bacterial leucyl-tRNA synthetases with archaeal tRNA binding domains that distinguish tRNALeu in the archaeal mode.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1, doi. 10.1093/nar/gku108

By:

Zhi-Peng Fang;
Meng Wang;
Zhi-Rong Ruan;
Min Tan;
Ru-Juan Liu;
Mi Zhou;
Xiao-Long Zhou;
En-Duo Wang

Publication type:

Article

Aptamer-guided gene targeting in yeast and human cells.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1, doi. 10.1093/nar/gku101

By:

Ruff, Patrick;
Kyung Duk Koh;
Keskin, Havva;
Pai, Rekha B.;
Storici, Francesca

Publication type:

Article

An mTERF domain protein functions in group II intron splicing in maize chloroplasts.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1, doi. 10.1093/nar/gku112

By:

Hammani, Kamel;
Barkan, Alice

Publication type:

Article

Alternative Lengthening of Telomeres is characterized by reduced compaction of telomeric chromatin.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1, doi. 10.1093/nar/gku114

By:

Episkopou, Harikleia;
Draskovic, Irena;
Van Beneden, Amandine;
Tilman, Gaë lle;
Mattiussi, Marina;
Gobin, Matthieu;
Arnoult, Nausica;
Londoño-Vallejo, Arturo;
Decottignies, Anabelle

Publication type:

Article

A dual promoter system regulating λ DNA replication initiation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1, doi. 10.1093/nar/gku103

By:

Olszewski, Paweb;
Szambowska, Anna;
Barańska, Sylwia;
Narajczyk, Magdalena;
Węgrzyn, Grzegorz;
Glinkowska, Monika

Publication type:

Article

A comparative analysis of transcription factor binding models learned from PBM, HT-SELEX and ChIP data.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1, doi. 10.1093/nar/gku117

By:

Orenstein, Yaron;
Shamir, Ron

Publication type:

Article

Analysis of the mechanism of nucleosome survival during transcription.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1619, doi. 10.1093/nar/gkt1120

By:

Chang, Han-Wen;
Kulaeva, Olga I.;
Shaytan, Alexey K.;
Kibanov, Mikhail;
Kuznedelov, Konstantin;
Severinov, Konstantin V.;
Kirpichnikov, Mikhail P.;
Clark, David J.;
Studitsky, Vasily M.

Publication type:

Article

Timing of GTP binding and hydrolysis by translation termination factor RF3.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1812, doi. 10.1093/nar/gkt1095

By:

Peske, Frank;
Kuhlenkoetter, Stephan;
Rodnina, Marina V.;
Wintermeyer, Wolfgang

Publication type:

Article

Elastic properties and secondary structure formation of single-stranded DNA at monovalent and divalent salt conditions.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 2064, doi. 10.1093/nar/gkt1089

By:

Bosco, Alessandro;
Camunas-Soler, Joan;
Ritort, Felix

Publication type:

Article

A cyclobutane thymine–N4-methylcytosine dimer is resistant to hydrolysis but strongly blocks DNA synthesis.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 2075, doi. 10.1093/nar/gkt1039

By:

Yamamoto, Junpei;
Oyama, Tomoko;
Kunishi, Tomohiro;
Masutani, Chikahide;
Hanaoka, Fumio;
Iwai, Shigenori

Publication type:

Article

Efficient DNA ligation in DNA–RNA hybrid helices by Chlorella virus DNA ligase.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1831, doi. 10.1093/nar/gkt1032

By:

Lohman, Gregory J. S.;
Zhang, Yinhua;
Zhelkovsky, Alexander M.;
Cantor, Eric J.;
Evans, Thomas C.

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 3, p. iii, doi. 10.1093/nar/gku061
Publication type:: Article

Intertwined pathways for Argonaute-mediated microRNA biogenesis in Drosophila.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1987, doi. 10.1093/nar/gkt1038

By:

Yang, Jr-Shiuan;
Smibert, Peter;
Westholm, Jakub O.;
Jee, David;
Maurin, Thomas;
Lai, Eric C.

Publication type:

Article

Life without tRNAIle-lysidine synthetase: translation of the isoleucine codon AUA in Bacillus subtilis lacking the canonical tRNA2Ile.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1904, doi. 10.1093/nar/gkt1009

By:

Köhrer, Caroline;
Mandal, Debabrata;
Gaston, Kirk W.;
Grosjean, Henri;
Limbach, Patrick A.;
RajBhandary, Uttam L.

Publication type:

Article

Identification and functional analysis of novel phosphorylation sites in the RNA surveillance protein Upf1.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1916, doi. 10.1093/nar/gkt1049

By:

Lasalde, Clarivel;
Rivera, Andrea V.;
León, Alfredo J.;
González-Feliciano, José A.;
Estrella, Luis A.;
Rodríguez-Cruz, Eva N.;
Correa, María E.;
Cajigas, Iván J.;
Bracho, Dina P.;
Vega, Irving E.;
Wilkinson, Miles F.;
González, Carlos I.

Publication type:

Article

RNA-dependent dynamic histone acetylation regulates MCL1 alternative splicing.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1656, doi. 10.1093/nar/gkt1134

By:

Khan, Dilshad H.;
Gonzalez, Carolina;
Cooper, Charlton;
Sun, Jian-Min;
Chen, Hou Yu;
Healy, Shannon;
Xu, Wayne;
Smith, Karen T.;
Workman, Jerry L.;
Leygue, Etienne;
Davie, James R.

Publication type:

Article

Interaction-based discovery of functionally important genes in cancers.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. e18, doi. 10.1093/nar/gkt1305

By:

Ghersi, Dario;
Singh, Mona

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 3, p. ii, doi. 10.1093/nar/gku038
Publication type:: Article

The evolution of the ribosome biogenesis pathway from a yeast perspective.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1509, doi. 10.1093/nar/gkt1137

By:

Ebersberger, Ingo;
Simm, Stefan;
Leisegang, Matthias S.;
Schmitzberger, Peter;
Mirus, Oliver;
von Haeseler, Arndt;
Bohnsack, Markus T.;
Schleiff, Enrico

Publication type:

Article

Redox-active quinones induces genome-wide DNA methylation changes by an iron-mediated and Tet-dependent mechanism.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1593, doi. 10.1093/nar/gkt1090

By:

Zhao, Bailin;
Yang, Ying;
Wang, Xiaoli;
Chong, Zechen;
Yin, Ruichuan;
Song, Shu-Hui;
Zhao, Chao;
Li, Cuiping;
Huang, Hua;
Sun, Bao-Fa;
Wu, Danni;
Jin, Kang-Xuan;
Song, Maoyong;
Zhu, Ben-Zhan;
Jiang, Guibin;
Rendtlew Danielsen, Jannie M.;
Xu, Guo-Liang;
Yang, Yun-Gui;
Wang, Hailin

Publication type:

Article

Telomeric repeats act as nucleosome-disfavouring sequences in vivo.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1541, doi. 10.1093/nar/gkt1006

By:

Ichikawa, Yuichi;
Morohashi, Nobuyuki;
Nishimura, Yoshifumi;
Kurumizaka, Hitoshi;
Shimizu, Mitsuhiro

Publication type:

Article

Stimulation of ribosomal frameshifting by RNA G-quadruplex structures.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1887, doi. 10.1093/nar/gkt1022

By:

Yu, Chien-Hung;
Teulade-Fichou, Marie-Paule;
Olsthoorn, René C. L.

Publication type:

Article

The insect-phase gRNA transcriptome in Trypanosoma brucei.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1873, doi. 10.1093/nar/gkt973

By:

Koslowsky, Donna;
Sun, Yanni;
Hindenach, Jordan;
Theisen, Terence;
Lucas, Jasmin

Publication type:

Article

Quantitation of DNA double-strand break resection intermediates in human cells.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. e19, doi. 10.1093/nar/gkt1309

By:

Zhou, Yi;
Caron, Pierre;
Legube, Gaëlle;
Paull, Tanya T.

Publication type:

Article

TeloTool: a new tool for telomere length measurement from terminal restriction fragment analysis with improved probe intensity correction.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. e21, doi. 10.1093/nar/gkt1315

By:

Göhring, Janett;
Fulcher, Nick;
Jacak, Jaroslaw;
Riha, Karel

Publication type:

Article

Characterization of the imprinting signature of mouse embryo fibroblasts by RNA deep sequencing.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1772, doi. 10.1093/nar/gkt1042

By:

Tran, Diana A.;
Bai, Angela Y.;
Singh, Purnima;
Wu, Xiwei;
Szabó, Piroska E.

Publication type:

Article

Alternative splicing of a group II intron in a surface layer protein gene in Clostridium tetani.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1959, doi. 10.1093/nar/gkt1053

By:

McNeil, Bonnie A.;
Simon, Dawn M.;
Zimmerly, Steven

Publication type:

Article

A meta-analysis revealed insights into the sources, conservation and impact of microRNA 5′-isoforms in four model species.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1427, doi. 10.1093/nar/gkt967

By:

Xia, Jing;
Zhang, Weixiong

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 3, p. i, doi. 10.1093/nar/gku015
Publication type:: Article

Molecular mechanisms of system responses to novel stimuli are predictable from public data.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1442, doi. 10.1093/nar/gkt938

By:

Danziger, Samuel A.;
Ratushny, Alexander V.;
Smith, Jennifer J.;
Saleem, Ramsey A.;
Wan, Yakun;
Arens, Christina E.;
Armstrong, Abraham M.;
Sitko, Katherine;
Chen, Wei-Ming;
Chiang, Jung-Hsien;
Reiss, David J.;
Baliga, Nitin S.;
Aitchison, John D.

Publication type:

Article

Myc and PI3K/AKT signaling cooperatively repress FOXO3a-dependent PUMA and GADD45a gene expression.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 2098, doi. 10.1093/nar/gkt994

By:

Amente, Stefano;
Zhang, Jiyuan;
Lavadera, Miriam Lubrano;
Lania, Luigi;
Avvedimento, Enrico Vittorio;
Majello, Barbara

Publication type:

Article

Identifying RNA-binding residues based on evolutionary conserved structural and energetic features.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. e15, doi. 10.1093/nar/gkt1299

By:

Chen, Yao Chi;
Sargsyan, Karen;
Wright, Jon D.;
Huang, Yi-Shuian;
Lim, Carmay

Publication type:

Article

Topoisomerase II minimizes DNA entanglements by proofreading DNA topology after DNA strand passage.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1821

By:

Martínez-García, Belén;
Fernández, Xavier;
Díaz-Ingelmo, Ofelia;
Rodríguez-Campos, Antonio;
Manichanh, Chaysavanh;
Roca, Joaquim

Publication type:

Article

Hox in motion: tracking HoxA cluster conformation during differentiation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1524, doi. 10.1093/nar/gkt998

By:

Rousseau, Mathieu;
Crutchley, Jennifer L.;
Miura, Hisashi;
Suderman, Matthew;
Blanchette, Mathieu;
Dostie, Josée

Publication type:

Article

Defining the roles of the N-terminal region and the helicase activity of RECQ4A in DNA repair and homologous recombination in Arabidopsis.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1684, doi. 10.1093/nar/gkt1004

By:

Schröpfer, Susan;
Kobbe, Daniela;
Hartung, Frank;
Knoll, Alexander;
Puchta, Holger

Publication type:

Article

Distinct substrate specificities of Arabidopsis DCL3 and DCL4.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1845, doi. 10.1093/nar/gkt1077

By:

Nagano, Hideaki;
Fukudome, Akihito;
Hiraguri, Akihiro;
Moriyama, Hiromitsu;
Fukuhara, Toshiyuki

Publication type:

Article

Biases in small RNA deep sequencing data.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1414, doi. 10.1093/nar/gkt1021

By:

Raabe, Carsten A.;
Tang, Thean-Hock;
Brosius, Juergen;
Rozhdestvensky, Timofey S.

Publication type:

Article

ESET methylates UBF at K232/254 and regulates nucleolar heterochromatin plasticity and rDNA transcription.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1628, doi. 10.1093/nar/gkt1041

By:

Hwang, Yu Jin;
Han, Dohyun;
Kim, Ki Yoon;
Min, Sun-Joon;
Kowall, Neil W.;
Yang, Liu;
Lee, Junghee;
Kim, Youngsoo;
Ryu, Hoon

Publication type:

Article

Integrated analysis of transcript-level regulation of metabolism reveals disease-relevant nodes of the human metabolic network.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1474, doi. 10.1093/nar/gkt989

By:

Galhardo, Mafalda;
Sinkkonen, Lasse;
Berninger, Philipp;
Lin, Jake;
Sauter, Thomas;
Heinäniemi, Merja

Publication type:

Article

The mechanism of pseudouridine synthases from a covalent complex with RNA, and alternate specificity for U2605 versus U2604 between close homologs.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 2037, doi. 10.1093/nar/gkt1050

By:

Czudnochowski, Nadine;
Ashley, Gary W.;
Santi, Daniel V.;
Alian, Akram;
Finer-Moore, Janet;
Stroud, Robert M.

Publication type:

Article