ptRNApred: computational identification and classification of post-transcriptional RNA.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 22, p. 1, doi. 10.1093/nar/gku918
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- Publication type:
- Article
Works matching IS 03051048 AND DT 2014 AND VI 42 AND IP 22
Results: 63
1
2
Specific minor groove solvation is a crucial determinant of DNA binding site recognition.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 14053, doi. 10.1093/nar/gku1259
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- Article
3
Easy quantitative assessment of genome editing by sequence trace decomposition.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 1, doi. 10.1093/nar/gku936
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- Article
4
AGO2 and SETDB1 cooperate in promoter-targeted transcriptional silencing of the androgen receptor gene.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13545, doi. 10.1093/nar/gku788
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- Article
5
Corrigendum.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 14083, doi. 10.1093/nar/gku1217
- Publication type:
- Article
6
Crystal structure of the R-protein of the multisubunit ATP-dependent restriction endonuclease NgoAVII.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 14022, doi. 10.1093/nar/gku1237
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- Article
7
Synergetic regulation of translational reading-frame switch by ligand-responsive RNAs in mammalian cells.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 14070, doi. 10.1093/nar/gku1233
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- Article
8
Multiplex sequencing of pooled mitochondrial genomes--a crucial step toward biodiversity analysis using mito-metagenomics.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 1, doi. 10.1093/nar/gku917
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- Article
9
Molecular insights into the interaction of the ribosomal stalk protein with elongation factor 1α.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 14042, doi. 10.1093/nar/gku1248
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- Article
10
Loss of loop adenines alters human telomere d[AG<sub>3</sub>(TTAG<sub>3</sub>)<sub>3</sub>] quadruplex folding.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 14031, doi. 10.1093/nar/gku1245
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- Article
11
Structural basis for inhibition of DNA replication by aphidicolin.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 14013, doi. 10.1093/nar/gku1209
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- Article
12
A bottom-up characterization of transfer functions for synthetic biology designs: lessons from enzymology.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 14060, doi. 10.1093/nar/gku964
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- Article
13
Atomic force microscopy study of DNA flexibility on short length scales: smooth bending versus kinking.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 14006, doi. 10.1093/nar/gku1192
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- Article
14
Ubiquitin recognition by FAAP20 expands the complex interface beyond the canonical UBZ domain.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13997, doi. 10.1093/nar/gku1153
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- Publication type:
- Article
15
Ion distributions around left- and right-handed DNA and RNA duplexes: a comparative study.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13981, doi. 10.1093/nar/gku1107
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- Article
16
Alternative splicing at GYNNGY 5′ splice sites: more noise, less regulation.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13969, doi. 10.1093/nar/gku1253
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- Article
17
The separation between the 5′-3′ ends in long RNA molecules is short and nearly constant.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13963, doi. 10.1093/nar/gku1249
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- Publication type:
- Article
18
Identification of tri-phosphatase activity in the biogenesis of retroviral microRNAs and RNAP Ill-generated shRNAs.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13949, doi. 10.1093/nar/gku1247
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- Article
19
Dynalign II: common secondary structure prediction for RNA homologs with domain insertions.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13939, doi. 10.1093/nar/gku1172
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- Article
20
Drosophila melanogaster LRPPRC2 is involved in coordination of mitochondrial translation.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13920, doi. 10.1093/nar/gku1132
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- Article
21
Solution structure of the YTH domain in complex with N6-methyladenosine RNA: a reader of methylated RNA.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13911, doi. 10.1093/nar/gku1116
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- Article
22
Brr2p carboxy-terminal Sec63 domain modulates Prp16 splicing RNA helicase.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13897, doi. 10.1093/nar/gku1238
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- Article
23
DNA cleavage by CgII and NgoAVII requires interaction between N- and R-proteins and extensive nucleotide hydrolysis.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13887, doi. 10.1093/nar/gku1236
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- Publication type:
- Article
24
A minimalist mitochondrial threonyl-tRNA synthetase exhibits tRNA-isoacceptor specificity during proofreading.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13873, doi. 10.1093/nar/gku1218
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- Article
25
The Mtr4 ratchet helix and arch domain both function to promote RNA unwinding.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13861, doi. 10.1093/nar/gku1208
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- Article
26
Significant contribution of the 3′→5′ exonuclease activity to the high fidelity of nucleotide incorporation catalyzed by human DNA polymerase ϵ.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13853, doi. 10.1093/nar/gku1184
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- Article
27
Massively parallel determination and modeling of endonuclease substrate specificity.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13839, doi. 10.1093/nar/gku1096
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- Article
28
Sequential packaging of RNA genomic segments during the assembly of Bluetongue virus.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13824, doi. 10.1093/nar/gku1171
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- Article
29
HIV-1 transcription is regulated by splicing factor SRSF1.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13812, doi. 10.1093/nar/gku1170
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- Article
30
The H19/let-7 double-negative feedback loop contributes to glucose metabolism in muscle cells.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13799, doi. 10.1093/nar/gku1160
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- Article
31
Alanine repeats influence protein localization in splicing speckles and paraspeckles.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13788, doi. 10.1093/nar/gku1159
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- Article
32
Landscape of target:guide homology effects on Cas9-mediated cleavage.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13778, doi. 10.1093/nar/gku1102
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- Article
33
Widespread occurrence of organelle genome-encoded 5S rRNAs including permuted molecules.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13764, doi. 10.1093/nar/gku1266
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- Article
34
A 5′, 8-cyclo-2′-deoxypurine lesion induces trinucleotide repeat deletion via a unique lesion bypass by DNA polymerase β.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13749, doi. 10.1093/nar/gku1239
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- Article
35
Rpb4/7 facilitates RNA polymerase II CTD dephosphorylation.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13674, doi. 10.1093/nar/gku1227
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- Article
36
Identification by high-throughput imaging of the histone methyltransferase EHMT2 as an epigenetic regulator of VEGFA alternative splicing.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13662, doi. 10.1093/nar/gku1226
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- Article
37
Abundance of the Fanconi anaemia core complex is regulated by the RuvBLI and RuvBL2 AAA+ ATPases.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13736, doi. 10.1093/nar/gku1230
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- Article
38
Transcriptional bypass of regioisomeric ethylated thymidine lesions by T7 RNA polymerase and human RNA polymerase II.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13706, doi. 10.1093/nar/gku1183
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- Publication type:
- Article
39
Spatial organization of transcription machinery and its segregation from the replisome in fast-growing bacterial cells.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13696, doi. 10.1093/nar/gku1103
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- Publication type:
- Article
40
Inference of interactions between chromatin modifiers and histone modifications: from ChIP-Seq data to chromatin-signaling.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13689, doi. 10.1093/nar/gku1234
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- Publication type:
- Article
41
Rad51 /Dmc1 paralogs and mediators oppose DNA helicases to limit hybrid DNA formation and promote crossovers during meiotic recombination.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13723, doi. 10.1093/nar/gku1219
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- Article
42
DNA repair inhibition by UVA photoactivated fluoroquinolones and vemurafenib.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13714, doi. 10.1093/nar/gku1213
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- Publication type:
- Article
43
The mechanisms of genome-wide target gene regulation by TCF7L2 in liver cells.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13646, doi. 10.1093/nar/gku1225
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- Publication type:
- Article
44
In silico prediction of splice-altering single nucleotide variants in the human genome.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13534, doi. 10.1093/nar/gku1206
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- Article
45
An integrated approach for genome annotation of the eukaryotic thermophile Chaetomium thermophilum.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13525, doi. 10.1093/nar/gku1147
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- Publication type:
- Article
46
Constrained transcription factor spacing is prevalent and important for transcriptional control of mouse blood cells.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13513, doi. 10.1093/nar/gku1254
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- Article
47
Prediction of DNA binding motifs from 3D models of transcription factors; identifying TLX3 regulated genes.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13500, doi. 10.1093/nar/gku1228
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- Article
48
qDNAmod: a statistical model-based tool to reveal intercellular heterogeneity of DNA modification from SMRT sequencing data.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13488, doi. 10.1093/nar/gku1097
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- Article
49
Replication-guided nucleosome packing and nucleosome breathing expedite the formation of dense arrays.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13633, doi. 10.1093/nar/gku1190
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- Article
50
The TCF C-clamp DNA binding domain expands the Wnt transcriptome via alternative target recognition.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13615, doi. 10.1093/nar/gku1186
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- Publication type:
- Article