Works matching IS 03051048 AND DT 2014 AND VI 42 AND IP 21

Results: 50

NLS-tagging: an alternative strategy to tag nuclear proteins.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 000, doi. 10.1093/nar/gku869

By:

Giraud, Guillaume;
Stadhouders, Ralph;
Conidi, Andrea;
Dekkers, Dick H.W.;
Huylebroeck, Danny;
Demmers, Jeroen A.A.;
Soler, Eric;
Grosveld, Frank G.

Publication type:

Article

Insyght: navigating amongst abundant homologues, syntenies and gene functional annotations in bacteria, it's that symbol!

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 000, doi. 10.1093/nar/gku867

By:

Lacroix, Thomas;
Loux, Valentin;
Gendrault, Annie;
Hoebeke, Mark;
Gibrat, Jean-François

Publication type:

Article

Endonuclease G preferentially cleaves 5-hydroxymethylcytosine-modified DNA creating a substrate for recombination.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13280, doi. 10.1093/nar/gku1032

By:

Robertson, Adam B.;
Robertson, Julia;
Fusser, Markus;
Klungland, Arne

Publication type:

Article

Efficient processing of abasic sites by bacterial nonhomologous end-joining Ku proteins.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13082, doi. 10.1093/nar/gku1029

By:

de Ory, Ana;
Zafra, Olga;
de Vega, Miguel

Publication type:

Article

The role of G-density in switch region repeats for immunoglobulin class switch recombination.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13186, doi. 10.1093/nar/gku1100

By:

Zhang, Zheng Z.;
Pannunzio, Nicholas R.;
Hsieh, Chih-Lin;
Yu, Kefei;
Lieber, Michael R.

Publication type:

Article

Transcriptome analysis reveals novel regulatory mechanisms in a genome-reduced bacterium.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13254, doi. 10.1093/nar/gku976

By:

Mazin, Pavel V.;
Fisunov, Gleb Y.;
Gorbachev, Alexey Y.;
Kapitskaya, Kristina Y.;
Altukhov, Ilya A.;
Semashko, Tatiana A.;
Alexeev, Dmitry G.;
Govorun, Vadim M.

Publication type:

Article

Single nucleotide seed modification restores in vivo tolerability of a toxic artificial miRNA sequence in the mouse brain.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13315, doi. 10.1093/nar/gku979

By:

Monteys, Alex Mas;
Spengler, Ryan M.;
Dufour, Brett D.;
Wilson, Matt S.;
Oakley, Clayton K.;
Sowada, Matt J.;
McBride, Jodi L.;
Davidson, Beverly L.

Publication type:

Article

A portable BRCA1-HAC (human artificial chromosome) module for analysis of BRCA1 tumor suppressor function.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 000, doi. 10.1093/nar/gku870

By:

Kononenko, Artem V.;
Bansal, Ruchi;
Lee, Nicholas C.O.;
Grimes, Brenda R.;
Masumoto, Hiroshi;
Earnshaw, William C.;
Larionov, Vladimir;
Kouprina, Natalay

Publication type:

Article

Large-scale modeling of condition-specific gene regulatory networks by information integration and inference.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 000, doi. 10.1093/nar/gku916

By:

Ellwanger, Daniel Christian;
Leonhardt, Jörn Florian;
Mewes, Hans-Werner

Publication type:

Article

Crystal structure of a DNA/Ba2+ G-quadruplex containing a water-mediated C-tetrad.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13422, doi. 10.1093/nar/gku1122

By:

Zhang, Diana;
Huang, Terry;
Lukeman, Philip S.;
Paukstelis, Paul J.

Publication type:

Article

A perfect palindrome in the Escherichia coli chromosome forms DNA hairpins on both leading- and lagging-strands.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13206, doi. 10.1093/nar/gku1136

By:

Azeroglu, Benura;
Lincker, Frédéric;
White, Martin A.;
Jain, Devanshi;
Leach, David R.F.

Publication type:

Article

HERC2-USP20 axis regulates DNA damage checkpoint through Claspin.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13110, doi. 10.1093/nar/gku1034

By:

Yuan, Jian;
Luo, Kuntian;
Deng, Min;
Li, Yunhui;
Yin, Ping;
Gao, Bowen;
Fang, Yuan;
Wu, Puqiang;
Liu, Tongzheng;
Lou, Zhenkun

Publication type:

Article

HERC2/USP20 coordinates CHK1 activation by modulating CLASPIN stability.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13074, doi. 10.1093/nar/gku978

By:

Zhu, Min;
Zhao, Hongchang;
Liao, Ji;
Xu, Xingzhi

Publication type:

Article

A platform for rapid prototyping of synthetic gene networks in mammalian cells.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13440, doi. 10.1093/nar/gku1082

By:

Duportet, Xavier;
Wroblewska, Liliana;
Guye, Patrick;
Li, Yinqing;
Eyquem, Justin;
Rieders, Julianne;
Rimchala, Tharathorn;
Batt, Gregory;
Weiss, Ron

Publication type:

Article

Polymerase η suppresses telomere defects induced by DNA damaging agents.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13096, doi. 10.1093/nar/gku1030

By:

Pope-Varsalona, Hannah;
Liu, Fu-Jun;
Guzik, Lynda;
Opresko, Patricia L.

Publication type:

Article

Nucleic Acids Research: Editorial Board.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 21, p. ii, doi. 10.1093/nar/gku036
Publication type:: Article

Binding site discovery from nucleic acid sequences by discriminative learning of hidden Markov models.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 12995, doi. 10.1093/nar/gku1083

By:

Maaskola, Jonas;
Rajewsky, Nikolaus

Publication type:

Article

Ribosomes in the balance: structural equilibrium ensures translational fidelity and proper gene expression.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13384, doi. 10.1093/nar/gku1020

By:

Musalgaonkar, Sharmishtha;
Moomau, Christine A.;
Dinman, Jonathan D.

Publication type:

Article

Time-resolved assembly of a nucleoprotein complex between Shigella flexneri virF promoter and its transcriptional repressor H-NS.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13039, doi. 10.1093/nar/gku1052

By:

Ulissi, Ulisse;
Fabbretti, Attilio;
Sette, Marco;
Giuliodori, Anna Maria;
Spurio, Roberto

Publication type:

Article

Opposing roles of mitochondrial and nuclear PARP1 in the regulation of mitochondrial and nuclear DNA integrity: implications for the regulation of mitochondrial function.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13161, doi. 10.1093/nar/gku1089

By:

Szczesny, Bartosz;
Brunyanszki, Attila;
Olah, Gabor;
Mitra, Sankar;
Szabo, Csaba

Publication type:

Article

Transcription bypass of DNA lesions enhances cell survival but attenuates transcription coupled DNA repair.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13242, doi. 10.1093/nar/gku1150

By:

Li, Wentao;
Selvam, Kathiresan;
Ko, Tengyu;
Li, Shisheng

Publication type:

Article

ArfA recognizes the lack of mRNA in the mRNA channel after RF2 binding for ribosome rescue.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13339, doi. 10.1093/nar/gku1069

By:

Kurita, Daisuke;
Chadani, Yuhei;
Muto, Akira;
Abo, Tatsuhiko;
Himeno, Hyouta

Publication type:

Article

Synergistic modulation of cyclobutane pyrimidine dimer photoproduct formation and deamination at a TmCG site over a full helical DNA turn in a nucleosome core particle.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13122, doi. 10.1093/nar/gku1049

By:

Song, Qian;
Cannistraro, Vincent J.;
Taylor, John-Stephen

Publication type:

Article

Hug1 is an intrinsically disordered protein that inhibits ribonucleotide reductase activity by directly binding Rnr2 subunit.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13174, doi. 10.1093/nar/gku1095

By:

Meurisse, Julie;
Bacquin, Agathe;
Richet, Nicolas;
Charbonnier, Jean-Baptiste;
Ochsenbein, Françoise;
Peyroche, Anne

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 21, p. iii, doi. 10.1093/nar/gku059
Publication type:: Article

Structural insights into the function of a unique tandem GTPase EngA in bacterial ribosome assembly.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13430, doi. 10.1093/nar/gku1135

By:

Zhang, Xiaoxiao;
Yan, Kaige;
Zhang, Yixiao;
Li, Ningning;
Ma, Chengying;
Li, Zhifei;
Zhang, Yanqing;
Feng, Boya;
Liu, Jing;
Sun, Yadong;
Xu, Yanji;
Lei, Jianlin;
Gao, Ning

Publication type:

Article

Timely binding of IHF and Fis to DARS2 regulates ATP–DnaA production and replication initiation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13134, doi. 10.1093/nar/gku1051

By:

Kasho, Kazutoshi;
Fujimitsu, Kazuyuki;
Matoba, Toshihiro;
Oshima, Taku;
Katayama, Tsutomu

Publication type:

Article

RNA-dependent chromatin localization of KDM4D lysine demethylase promotes H3K9me3 demethylation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13026, doi. 10.1093/nar/gku1021

By:

Zoabi, Muhammad;
Nadar-Ponniah, Prathamesh T.;
Khoury-Haddad, Hanan;
Usaj, Marko;
Budowski-Tal, Inbal;
Haran, Tali;
Henn, Arnon;
Mandel-Gutfreund, Yael;
Ayoub, Nabieh

Publication type:

Article

Modes of TAL effector-mediated repression.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13061, doi. 10.1093/nar/gku1124

By:

Werner, Jeannette;
Gossen, Manfred

Publication type:

Article

Structural and biochemical impact of C8-aryl-guanine adducts within the NarI recognition DNA sequence: influence of aryl ring size on targeted and semi-targeted mutagenicity.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13405, doi. 10.1093/nar/gku1093

By:

Sproviero, Michael;
Verwey, Anne M.R.;
Rankin, Katherine M.;
Witham, Aaron A.;
Soldatov, Dmitriy V.;
Manderville, Richard A.;
Fekry, Mostafa I.;
Sturla, Shana J.;
Sharma, Purshotam;
Wetmore, Stacey D.

Publication type:

Article

Morphine drives internal ribosome entry site-mediated hnRNP K translation in neurons through opioid receptor-dependent signaling.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13012, doi. 10.1093/nar/gku1016

By:

Lee, Pin-Tse;
Chao, Po-Kuan;
Ou, Li-Chin;
Chuang, Jian-Ying;
Lin, Yen-Chang;
Chen, Shu-Chun;
Chang, Hsiao-Fu;
Law, Ping-Yee;
Loh, Horace H.;
Chao, Yu-Sheng;
Su, Tsung-Ping;
Yeh, Shiu-Hwa

Publication type:

Article

Structure-based predictions broadly link transcription factor mutations to gene expression changes in cancers.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 12973, doi. 10.1093/nar/gku1031

By:

Ashworth, Justin;
Bernard, Brady;
Reynolds, Sheila;
Plaisier, Christopher L.;
Shmulevich, Ilya;
Baliga, Nitin S.

Publication type:

Article

The role of nucleobase interactions in RNA structure and dynamics.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13306, doi. 10.1093/nar/gku972

By:

Bottaro, Sandro;
Di Palma, Francesco;
Bussi, Giovanni

Publication type:

Article

svaseq: removing batch effects and other unwanted noise from sequencing data.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 000, doi. 10.1093/nar/gku864

By:

Leek, Jeffrey T.

Publication type:

Article

Amplicon rearrangements during the extrachromosomal and intrachromosomal amplification process in a glioma.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13194, doi. 10.1093/nar/gku1101

By:

Vogt, Nicolas;
Gibaud, Anne;
Lemoine, Frédéric;
de la Grange, Pierre;
Debatisse, Michelle;
Malfoy, Bernard

Publication type:

Article

The L7Ae protein binds to two kink-turns in the Pyrococcus furiosus RNase P RNA.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13328, doi. 10.1093/nar/gku994

By:

Lai, Stella M.;
Lai, Lien B.;
Foster, Mark P.;
Gopalan, Venkat

Publication type:

Article

iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 12961, doi. 10.1093/nar/gku1019

By:

Lin, Hao;
Deng, En-Ze;
Ding, Hui;
Chen, Wei;
Chou, Kuo-Chen

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 21, p. i, doi. 10.1093/nar/gku013
Publication type:: Article

Molecular recognition of RhlB and RNase D in the Caulobacter crescentus RNA degradosome.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13294, doi. 10.1093/nar/gku1134

By:

Voss, Jarrod E.;
Luisi, Ben F.;
Hardwick, Steven W.

Publication type:

Article

The conserved GTPase LepA contributes mainly to translation initiation in Escherichia coli.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13370, doi. 10.1093/nar/gku1098

By:

Balakrishnan, Rohan;
Oman, Kenji;
Shoji, Shinichiro;
Bundschuh, Ralf;
Fredrick, Kurt

Publication type:

Article

Integrated mechanism for the generation of the 5′ junctions of LINE inserts.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13269, doi. 10.1093/nar/gku1067

By:

Yamaguchi, Katsumi;
Kajikawa, Masaki;
Okada, Norihiro

Publication type:

Article

Double-stranded DNA-dependent ATPase Irc3p is directly involved in mitochondrial genome maintenance.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13214, doi. 10.1093/nar/gku1148

By:

Sedman, Tiina;
Gaidutšik, Ilja;
Villemson, Karin;
Hou, YingJian;
Sedman, Juhan

Publication type:

Article

Computational analysis of amino acids and their sidechain analogs in crowded solutions of RNA nucleobases with implications for the mRNA–protein complementarity hypothesis.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 12984, doi. 10.1093/nar/gku1035

By:

Hajnic, Matea;
Osorio, Juan Iregui;
Zagrovic, Bojan

Publication type:

Article

Oxidative DNA damage is instrumental in hyperreplication stress-induced inviability of Escherichia coli.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13228, doi. 10.1093/nar/gku1149

By:

Charbon, Godefroid;
Bjørn, Louise;
Mendoza-Chamizo, Belén;
Frimodt-Møller, Jakob;
Løbner-Olesen, Anders

Publication type:

Article

Optimization of transcription factor binding map accuracy utilizing knockout-mouse models.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13051, doi. 10.1093/nar/gku1078

By:

Krebs, Wolfgang;
Schmidt, Susanne V.;
Goren, Alon;
De Nardo, Dominic;
Labzin, Larisa;
Bovier, Anton;
Ulas, Thomas;
Theis, Heidi;
Kraut, Michael;
Latz, Eicke;
Beyer, Marc;
Schultze, Joachim L.

Publication type:

Article

Target-responsive DNA-capped nanocontainer used for fabricating universal detector and performing logic operations.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 000, doi. 10.1093/nar/gku858

By:

Wu, Li;
Ren, Jinsong;
Qu, Xiaogang

Publication type:

Article

G-triplex structure and formation propensity.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13393, doi. 10.1093/nar/gku1084

By:

Cerofolini, Linda;
Amato, Jussara;
Giachetti, Andrea;
Limongelli, Vittorio;
Novellino, Ettore;
Parrinello, Michele;
Fragai, Marco;
Randazzo, Antonio;
Luchinat, Claudio

Publication type:

Article

Functional characterization of C. elegans Y-box-binding proteins reveals tissue-specific functions and a critical role in the formation of polysomes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13353, doi. 10.1093/nar/gku1077

By:

Arnold, Andreas;
Rahman, Md Masuder;
Lee, Man Chun;
Muehlhaeusser, Sandra;
Katic, Iskra;
Gaidatzis, Dimos;
Hess, Daniel;
Scheckel, Claudia;
Wright, Jane E.;
Stetak, Attila;
Boag, Peter R.;
Ciosk, Rafal

Publication type:

Article

Chk2 and REGγ-dependent DBC1 regulation in DNA damage induced apoptosis.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13150, doi. 10.1093/nar/gku1065

By:

Magni, Martina;
Ruscica, Vincenzo;
Buscemi, Giacomo;
Kim, Ja-Eun;
Nachimuthu, Benjamin Tamilselvan;
Fontanella, Enrico;
Delia, Domenico;
Zannini, Laura

Publication type:

Article

SHAPE-Seq 2.0: systematic optimization and extension of high-throughput chemical probing of RNA secondary structure with next generation sequencing.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 000, doi. 10.1093/nar/gku909

By:

Loughrey, David;
Watters, Kyle E.;
Settle, Alexander H.;
Lucks, Julius B.

Publication type:

Article