Works matching IS 03051048 AND DT 2014 AND VI 42 AND IP 20

Results: 58

Mapping overlapping functional elements embedded within the protein-coding regions of RNA viruses.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12425, doi. 10.1093/nar/gku981

By:

Firth, Andrew E.

Publication type:

Article

Ribosomal stress activates eEF2K–eEF2 pathway causing translation elongation inhibition and recruitment of Terminal Oligopyrimidine (TOP) mRNAs on polysomes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12668, doi. 10.1093/nar/gku996

By:

Gismondi, Angelo;
Caldarola, Sara;
Lisi, Gaia;
Juli, Giada;
Chellini, Lidia;
Iadevaia, Valentina;
Proud, Christopher G.;
Loreni, Fabrizio

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 20, p. iii, doi. 10.1093/nar/gku058
Publication type:: Article

Survey of chimeric IStron elements in bacterial genomes: multiple molecular symbioses between group I intron ribozymes and DNA transposons.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12333, doi. 10.1093/nar/gku939

By:

Tourasse, Nicolas J.;
Stabell, Fredrik B.;
Kolstø, Anne-Brit

Publication type:

Article

cnvCapSeq: detecting copy number variation in long-range targeted resequencing data.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. e158, doi. 10.1093/nar/gku849

By:

Bellos, Evangelos;
Kumar, Vikrant;
Lin, Clarabelle;
Maggi, Jordi;
Phua, Zai Yang;
Cheng, Ching-Yu;
Cheung, Chui Ming Gemmy;
Hibberd, Martin L.;
Wong, Tien Yin;
Coin, Lachlan J. M.;
Davila, Sonia

Publication type:

Article

Quantification of pre-mRNA escape rate and synergy in splicing.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12847, doi. 10.1093/nar/gku1014

By:

Bonde, Marie Mi;
Voegeli, Sylvia;
Baudrimont, Antoine;
Séraphin, Bertrand;
Becskei, Attila

Publication type:

Article

A cytoplasmic RNA virus generates functional viral small RNAs and regulates viral IRES activity in mammalian cells.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12789, doi. 10.1093/nar/gku952

By:

Weng, Kuo-Feng;
Hung, Chuan-Tien;
Hsieh, Po-Ting;
Li, Mei-Ling;
Chen, Guang-Wu;
Kung, Yu-An;
Huang, Peng-Nien;
Kuo, Rei-Lin;
Chen, Li-Lien;
Lin, Jing-Yi;
Wang, Robert Yung-Liang;
Chen, Shu-Jen;
Tang, Petrus;
Horng, Jim-Tong;
Huang, Hsing-I;
Wang, Jen-Ren;
Ojcius, David M.;
Brewer, Gary;
Shih, Shin-Ru

Publication type:

Article

The genomic landscape of polymorphic human nuclear mitochondrial insertions.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12640, doi. 10.1093/nar/gku1038

By:

Dayama, Gargi;
Emery, Sarah B.;
Kidd, Jeffrey M.;
Mills, Ryan E.

Publication type:

Article

Defective histone supply causes condensin-dependent chromatin alterations, SAC activation and chromosome decatenation impairment.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12469, doi. 10.1093/nar/gku927

By:

Murillo-Pineda, Marina;
Cabello-Lobato, María J.;
Clemente-Ruiz, Marta;
Monje-Casas, Fernando;
Prado, Félix

Publication type:

Article

hnRNPA1 couples nuclear export and translation of specific mRNAs downstream of FGF-2/S6K2 signalling.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12483, doi. 10.1093/nar/gku953

By:

Roy, Rajat;
Durie, Danielle;
Li, Hui;
Liu, Bing-Qian;
Skehel, John Mark;
Mauri, Francesco;
Cuorvo, Lucia Veronica;
Barbareschi, Mattia;
Guo, Lin;
Holcik, Martin;
Seckl, Michael J.;
Pardo, Olivier E.

Publication type:

Article

Multiple novel promoter-architectures revealed by decoding the hidden heterogeneity within the genome.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12388, doi. 10.1093/nar/gku924

By:

Narlikar, Leelavati

Publication type:

Article

Architecture and ssDNA interaction of the Timeless-Tipin-RPA complex.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12912, doi. 10.1093/nar/gku960

By:

Witosch, Justine;
Wolf, Eva;
Mizuno, Naoko

Publication type:

Article

The Myb domain of the largest subunit of SNAPc adopts different architectural configurations on U1 and U6 snRNA gene promoter sequences.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12440, doi. 10.1093/nar/gku905

By:

Kang, Yoon Soon;
Kurano, Michelle;
Stumph, William E.

Publication type:

Article

A real-time fluorescence polarization activity assay to screen for inhibitors of bacterial ribonuclease P.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. e159, doi. 10.1093/nar/gku850

By:

Liu, Xin;
Chen, Yu;
Fierke, Carol A.

Publication type:

Article

Nucleic Acids Research: Editorial Board.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 20, p. ii, doi. 10.1093/nar/gku035
Publication type:: Article

Suppression of subtelomeric VSG switching by Trypanosoma brucei TRF requires its TTAGGG repeat-binding activity.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12899, doi. 10.1093/nar/gku942

By:

Jehi, Sanaa E.;
Li, Xiaohua;
Sandhu, Ranjodh;
Ye, Fei;
Benmerzouga, Imaan;
Zhang, Mingjie;
Zhao, Yanxiang;
Li, Bibo

Publication type:

Article

Critical role of DNA intercalation in enzyme-catalyzed nucleotide flipping.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12681, doi. 10.1093/nar/gku919

By:

Hendershot, Jenna M.;
O'Brien, Patrick J.

Publication type:

Article

Dye label interference with RNA modification reveals 5-fluorouridine as non-covalent inhibitor.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12735, doi. 10.1093/nar/gku908

By:

Spenkuch, Felix;
Hinze, Gerald;
Kellner, Stefanie;
Kreutz, Christoph;
Micura, Ronald;
Basché, Thomas;
Helm, Mark

Publication type:

Article

Checkpoint-dependent and independent roles of the Werner syndrome protein in preserving genome integrity in response to mild replication stress.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12628, doi. 10.1093/nar/gku1022

By:

Basile, Giorgia;
Leuzzi, Giuseppe;
Pichierri, Pietro;
Franchitto, Annapaola

Publication type:

Article

cgDNA: a software package for the prediction of sequence-dependent coarse-grain free energies of B-form DNA.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. e153

By:

Petkevičiūtė, D.;
Pasi, M.;
Gonzalez, O.;
Maddocks, J.H.

Publication type:

Article

HIV-2 genomic RNA accumulates in stress granules in the absence of active translation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12861, doi. 10.1093/nar/gku1017

By:

Soto-Rifo, Ricardo;
Valiente-Echeverria, Fernando;
Rubilar, Paulina S.;
Garcia-de-Gracia, Francisco;
Ricci, Emiliano P.;
Limousin, Taran;
Décimo, Didier;
Mouland, Andrew J.;
Ohlmann, Théophile

Publication type:

Article

Identification of a Mg2+-sensitive ORF in the 5′-leader of TRPM7 magnesium channel mRNA.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12779, doi. 10.1093/nar/gku951

By:

Nikonorova, Inna A.;
Kornakov, Nikolay V.;
Dmitriev, Sergey E.;
Vassilenko, Konstantin S.;
Ryazanov, Alexey G.

Publication type:

Article

Mycobacterium smegmatis DinB2 misincorporates deoxyribonucleotides and ribonucleotides during templated synthesis and lesion bypass.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12722, doi. 10.1093/nar/gku1027

By:

Ordonez, Heather;
Shuman, Stewart

Publication type:

Article

Potential non-B DNA regions in the human genome are associated with higher rates of nucleotide mutation and expression variation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12367, doi. 10.1093/nar/gku921

By:

Du, Xiangjun;
Gertz, E. Michael;
Wojtowicz, Damian;
Zhabinskaya, Dina;
Levens, David;
Benham, Craig J.;
Schäffer, Alejandro A.;
Przytycka, Teresa M.

Publication type:

Article

Heavy transcription of yeast genes correlates with differential loss of histone H2B relative to H4 and queued RNA polymerases.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12512, doi. 10.1093/nar/gku1013

By:

Cole, Hope A.;
Ocampo, Josefina;
Iben, James R.;
Chereji, Răzvan V.;
Clark, David J.

Publication type:

Article

Requirement of CRTC1 coactivator for hepatitis B virus transcription.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12455, doi. 10.1093/nar/gku925

By:

Tang, Hei-Man Vincent;
Gao, Wei-Wei;
Chan, Chi-Ping;
Cheng, Yun;
Chaudhary, Vidyanath;
Deng, Jian-Jun;
Yuen, Kit-San;
Wong, Chun-Ming;
Ng, Irene Oi-Lin;
Kok, Kin-Hang;
Zhou, Jie;
Jin, Dong-Yan

Publication type:

Article

A competitive formation of DNA:RNA hybrid G-quadruplex is responsible to the mitochondrial transcription termination at the DNA replication priming site.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12960, doi. 10.1093/nar/gku931

By:

Zheng, Ke-wei;
Wu, Ren-yi;
He, Yi-de;
Xiao, Shan;
Zhang, Jia-yu;
Liu, Jia-quan;
Hao, Yu-hua;
Tan, Zheng

Publication type:

Article

G-quadruplexes in viruses: function and potential therapeutic applications.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12352

By:

Métifiot, Mathieu;
Amrane, Samir;
Litvak, Simon;
Andreola, Marie-Line

Publication type:

Article

Control of VEGF-A transcriptional programs by pausing and genomic compartmentalization.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12570, doi. 10.1093/nar/gku1036

By:

Kaikkonen, Minna U.;
Niskanen, Henri;
Romanoski, Casey E.;
Kansanen, Emilia;
Kivelä, Annukka M.;
Laitalainen, Jarkko;
Heinz, Sven;
Benner, Christopher;
Glass, Christopher K.;
Ylä-Herttuala, Seppo

Publication type:

Article

N-terminal phosphorylation of HP1α increases its nucleosome-binding specificity.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12498, doi. 10.1093/nar/gku995

By:

Nishibuchi, Gohei;
Machida, Shinichi;
Osakabe, Akihisa;
Murakoshi, Hiromu;
Hiragami-Hamada, Kyoko;
Nakagawa, Reiko;
Fischle, Wolfgang;
Nishimura, Yoshifumi;
Kurumizaka, Hitoshi;
Tagami, Hideaki;
Nakayama, Jun-ichi

Publication type:

Article

Organelle-mimicking liposome dissociates G-quadruplexes and facilitates transcription.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12949, doi. 10.1093/nar/gku998

By:

Pramanik, Smritimoy;
Tateishi-Karimata, Hisae;
Sugimoto, Naoki

Publication type:

Article

Locus-specific control of DNA resection and suppression of subtelomeric VSG recombination by HAT3 in the African trypanosome.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12600, doi. 10.1093/nar/gku900

By:

Glover, Lucy;
Horn, David

Publication type:

Article

TRAP150 activates splicing in composite terminal exons.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12822, doi. 10.1093/nar/gku963

By:

Lee, Kuo-Ming;
Tarn, Woan-Yuh

Publication type:

Article

Search by proteins for their DNA target site: 2. The effect of DNA conformation on the dynamics of multidomain proteins.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12415, doi. 10.1093/nar/gku933

By:

Bhattacherjee, Arnab;
Levy, Yaakov

Publication type:

Article

Comparison of TALE designer transcription factors and the CRISPR/dCas9 in regulation of gene expression by targeting enhancers.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. e155, doi. 10.1093/nar/gku836

By:

Gao, Xuefei;
Tsang, Jason C.H.;
Gaba, Fortis;
Wu, Donghai;
Lu, Liming;
Liu, Pentao

Publication type:

Article

New tools provide a second look at HDV ribozyme structure, dynamics and cleavage.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12833, doi. 10.1093/nar/gku992

By:

Kapral, Gary J.;
Jain, Swati;
Noeske, Jonas;
Doudna, Jennifer A.;
Richardson, David C.;
Richardson, Jane S.

Publication type:

Article

Why base tautomerization does not cause errors in mRNA decoding on the ribosome.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12876, doi. 10.1093/nar/gku1044

By:

Satpati, Priyadarshi;
Åqvist, Johan

Publication type:

Article

Resveratrol post-transcriptionally regulates pro-inflammatory gene expression via regulation of KSRP RNA binding activity.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12555, doi. 10.1093/nar/gku1033

By:

Bollmann, Franziska;
Art, Julia;
Henke, Jenny;
Schrick, Katharina;
Besche, Verena;
Bros, Matthias;
Li, Huige;
Siuda, Daniel;
Handler, Norbert;
Bauer, Florian;
Erker, Thomas;
Behnke, Felix;
Mönch, Bettina;
Härdle, Lorena;
Hoffmann, Markus;
Chen, Ching-Yi;
Förstermann, Ulrich;
Dirsch, Verena M.;
Werz, Oliver;
Kleinert, Hartmut

Publication type:

Article

Trigger-helix folding pathway and SI3 mediate catalysis and hairpin-stabilized pausing by Escherichia coli RNA polymerase.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12707, doi. 10.1093/nar/gku997

By:

Windgassen, Tricia A.;
Mooney, Rachel Anne;
Nayak, Dhananjaya;
Palangat, Murali;
Zhang, Jinwei;
Landick, Robert

Publication type:

Article

Profiling the transcription factor regulatory networks of human cell types.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12380, doi. 10.1093/nar/gku923

By:

Zhang, Shihua;
Tian, Dechao;
Tran, Ngoc Hieu;
Choi, Kwok Pui;
Zhang, Louxin

Publication type:

Article

A novel virus-inducible enhancer of the interferon-β gene with tightly linked promoter and enhancer activities.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12537, doi. 10.1093/nar/gku1018

By:

Banerjee, A. Raja;
Kim, Yoon Jung;
Kim, Tae Hoon

Publication type:

Article

Modifications to toxic CUG RNAs induce structural stability, rescue mis-splicing in a myotonic dystrophy cell model and reduce toxicity in a myotonic dystrophy zebrafish model.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12768, doi. 10.1093/nar/gku941

By:

deLorimier, Elaine;
Coonrod, Leslie A.;
Copperman, Jeremy;
Taber, Alex;
Reister, Emily E.;
Sharma, Kush;
Todd, Peter K.;
Guenza, Marina G.;
Berglund, J. Andrew

Publication type:

Article

PaperClip: rapid multi-part DNA assembly from existing libraries.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. e154, doi. 10.1093/nar/gku829

By:

Trubitsyna, Maryia;
Michlewski, Gracjan;
Cai, Yizhi;
Elfick, Alistair;
French, Christopher E.

Publication type:

Article

Global identification of target recognition and cleavage by the Microprocessor in human ES cells.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12806, doi. 10.1093/nar/gku957

By:

Seong, Youngmo;
Lim, Do-Hwan;
Kim, Augustine;
Seo, Jae Hong;
Lee, Young Sik;
Song, Hoseok;
Kwon, Young-Soo

Publication type:

Article

MACE: model based analysis of ChIP-exo.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. e156, doi. 10.1093/nar/gku846

By:

Wang, Liguo;
Chen, Junsheng;
Wang, Chen;
Uusküla-Reimand, Liis;
Chen, Kaifu;
Medina-Rivera, Alejandra;
Young, Edwin J.;
Zimmermann, Michael T.;
Yan, Huihuang;
Sun, Zhifu;
Zhang, Yuji;
Wu, Stephen T.;
Huang, Haojie;
Wilson, Michael D.;
Kocher, Jean-Pierre A.;
Li, Wei

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 20, p. i, doi. 10.1093/nar/gku012
Publication type:: Article

SNP-guided identification of monoallelic DNA-methylation events from enrichment-based sequencing data.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. e157, doi. 10.1093/nar/gku847

By:

Steyaert, Sandra;
Van Criekinge, Wim;
De Paepe, Ayla;
Denil, Simon;
Mensaert, Klaas;
Vandepitte, Katrien;
Berghe, Wim Vanden;
Trooskens, Geert;
De Meyer, Tim

Publication type:

Article

Archaeal DnaG contains a conserved N-terminal RNA-binding domain and enables tailing of rRNA by the exosome.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12691, doi. 10.1093/nar/gku969

By:

Hou, Linlin;
Klug, Gabriele;
Evguenieva-Hackenberg, Elena

Publication type:

Article

Mammalian translation elongation factor eEF1A2: X-ray structure and new features of GDP/GTP exchange mechanism in higher eukaryotes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12939, doi. 10.1093/nar/gku974

By:

Crepin, Thibaut;
Shalak, Vyacheslav F.;
Yaremchuk, Anna D.;
Vlasenko, Dmytro O.;
McCarthy, Andrew;
Negrutskii, Boris S.;
Tukalo, Michail A.;
El'skaya, Anna V.

Publication type:

Article

Chromosome conformation maps in fission yeast reveal cell cycle dependent sub nuclear structure.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12585, doi. 10.1093/nar/gku965

By:

Grand, Ralph S.;
Pichugina, Tatyana;
Gehlen, Lutz R.;
Jones, M. Beatrix;
Tsai, Peter;
Allison, Jane R.;
Martienssen, Robert;
O'Sullivan, Justin M.

Publication type:

Article