Works matching IS 03051048 AND DT 2014 AND VI 42 AND IP 19

Results: 54

Human PrimPol mutation associated with high myopia has a DNA replication defect.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12102, doi. 10.1093/nar/gku879

By:

Keen, Benjamin A.;
Bailey, Laura J.;
Jozwiakowski, Stanislaw K.;
Doherty, Aidan J.

Publication type:

Article

RAN translation and frameshifting as translational challenges at simple repeats of human neurodegenerative disorders.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 11849, doi. 10.1093/nar/gku794

By:

Wojciechowska, Marzena;
Olejniczak, Marta;
Galka-Marciniak, Paulina;
Jazurek, Magdalena;
Krzyzosiak, Wlodzimierz J.

Publication type:

Article

ClaRNA: a classifier of contacts in RNA 3D structures based on a comparative analysis of various classification schemes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. e151, doi. 10.1093/nar/gku765

By:

Waleń, Tomasz;
Chojnowski, Grzegorz;
Gierski, Przemysław;
Bujnicki, Janusz M.

Publication type:

Article

Highly potent dUTPase inhibition by a bacterial repressor protein reveals a novel mechanism for gene expression control.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 11912, doi. 10.1093/nar/gku882

By:

Szabó, Judit E.;
Németh, Veronika;
Papp-Kádár, Veronika;
Nyíri, Kinga;
Leveles, Ibolya;
Bendes, Ábris Á.;
Zagyva, Imre;
Róna, Gergely;
Pálinkás, Hajnalka L.;
Besztercei, Balázs;
Ozohanics, Olivér;
Vékey, Károly;
Liliom, Károly;
Tóth, Judit;
Vértessy, Beáta G.

Publication type:

Article

Large-scale mapping of sequence-function relations in small regulatory RNAs reveals plasticity and modularity.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12177, doi. 10.1093/nar/gku863

By:

Peterman, Neil;
Lavi-Itzkovitz, Anat;
Levine, Erel

Publication type:

Article

FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. e145, doi. 10.1093/nar/gku702

By:

Prestat, Emmanuel;
David, Maude M.;
Hultman, Jenni;
Taş, Neslihan;
Lamendella, Regina;
Dvornik, Jill;
Mackelprang, Rachel;
Myrold, David D.;
Jumpponen, Ari;
Tringe, Susannah G.;
Holman, Elizabeth;
Mavromatis, Konstantinos;
Jansson, Janet K.

Publication type:

Article

Regulation of BCL-X splicing reveals a role for the polypyrimidine tract binding protein (PTBP1/hnRNP I) in alternative 5′ splice site selection.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12070, doi. 10.1093/nar/gku922

By:

Bielli, Pamela;
Bordi, Matteo;
Biasio, Valentina Di;
Sette, Claudio

Publication type:

Article

ADAR2 induces reproducible changes in sequence and abundance of mature microRNAs in the mouse brain.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12155, doi. 10.1093/nar/gku844

By:

Vesely, Cornelia;
Tauber, Stefanie;
Sedlazeck, Fritz J.;
Tajaddod, Mansoureh;
Haeseler, Arndt von;
Jantsch, Michael F.

Publication type:

Article

The Werner syndrome protein limits the error-prone 8-oxo-dG lesion bypass activity of human DNA polymerase kappa.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12027, doi. 10.1093/nar/gku913

By:

Maddukuri, Leena;
Ketkar, Amit;
Eddy, Sarah;
Zafar, Maroof K.;
Eoff, Robert L.

Publication type:

Article

Explicit DNase sequence bias modeling enables high-resolution transcription factor footprint detection.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 11865

By:

Yardımcı, Galip Gürkan;
Frank, Christopher L.;
Crawford, Gregory E.;
Ohler, Uwe

Publication type:

Article

Locked nucleic acid oligomers as handles for single molecule manipulation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. e150, doi. 10.1093/nar/gku760

By:

Berezney, John P.;
Saleh, Omar A.

Publication type:

Article

Quantitative determination of decitabine incorporation into DNA and its effect on mutation rates in human cancer cells.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. e152, doi. 10.1093/nar/gku775

By:

Öz, Simin;
Raddatz, Günter;
Rius, Maria;
Blagitko-Dorfs, Nadja;
Lübbert, Michael;
Maercker, Christian;
Lyko, Frank

Publication type:

Article

A ‘tool box’ for deciphering neuronal circuits in the developing chick spinal cord.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. e148, doi. 10.1093/nar/gku750

By:

Hadas, Yoav;
Etlin, Alex;
Falk, Haya;
Avraham, Oshri;
Kobiler, Oren;
Panet, Amos;
Lev-Tov, Aharon;
Klar, Avihu

Publication type:

Article

Protein-responsive ribozyme switches in eukaryotic cells.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12306, doi. 10.1093/nar/gku875

By:

Kennedy, Andrew B.;
Vowles, James V.;
d'Espaux, Leo;
Smolke, Christina D.

Publication type:

Article

μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12272, doi. 10.1093/nar/gku855

By:

Pasi, Marco;
Maddocks, John H.;
Beveridge, David;
Bishop, Thomas C.;
Case, David A.;
Cheatham, Thomas;
Dans, Pablo D.;
Jayaram, B.;
Lankas, Filip;
Laughton, Charles;
Mitchell, Jonathan;
Osman, Roman;
Orozco, Modesto;
Pérez, Alberto;
Petkevičiūtė, Daiva;
Spackova, Nada;
Sponer, Jiri;
Zakrzewska, Krystyna;
Lavery, Richard

Publication type:

Article

Weak base pairing in both seed and 3′ regions reduces RNAi off-targets and enhances si/shRNA designs.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12169, doi. 10.1093/nar/gku854

By:

Gu, Shuo;
Zhang, Yue;
Jin, Lan;
Huang, Yong;
Zhang, Feijie;
Bassik, Michael C.;
Kampmann, Martin;
Kay, Mark A.

Publication type:

Article

A biomechanical mechanism for initiating DNA packaging.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 11921, doi. 10.1093/nar/gku896

By:

Wang, Haowei;
Yehoshua, Samuel;
Ali, Sabrina S.;
Navarre, William Wiley;
Milstein, Joshua N.

Publication type:

Article

Nucleic Acids Research: Editorial Board.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 19, p. ii, doi. 10.1093/nar/gku033
Publication type:: Article

Snapshots of pre-rRNA structural flexibility reveal eukaryotic 40S assembly dynamics at nucleotide resolution.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12138, doi. 10.1093/nar/gku815

By:

Hector, Ralph D.;
Burlacu, Elena;
Aitken, Stuart;
Bihan, Thierry Le;
Tuijtel, Maarten;
Zaplatina, Alina;
Cook, Atlanta G.;
Granneman, Sander

Publication type:

Article

A new method for accurate assessment of DNA quality after bisulfite treatment.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12331, doi. 10.1093/nar/gku904

By:

Ehrich, M.;
Zoll, S.;
Sur, S.;
van den Boom, D.

Publication type:

Article

Structural requirement of Ntc77 for spliceosome activation and first catalytic step.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12261, doi. 10.1093/nar/gku914

By:

Chen, Hsin-Chou;
Chang, Kae-Jiun;
Su, Yu-Lun;
Huang, Yu-Hsin;
Cheng, Soo-Chen

Publication type:

Article

Rio1 mediates ATP-dependent final maturation of 40S ribosomal subunits.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12189, doi. 10.1093/nar/gku878

By:

Turowski, Tomasz W.;
Lebaron, Simon;
Zhang, Elodie;
Peil, Lauri;
Dudnakova, Tatiana;
Petfalski, Elisabeth;
Granneman, Sander;
Rappsilber, Juri;
Tollervey, David

Publication type:

Article

Comparative RNA-Seq based dissection of the regulatory networks and environmental stimuli underlying Vibrio parahaemolyticus gene expression during infection.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12212, doi. 10.1093/nar/gku891

By:

Livny, Jonathan;
Zhou, Xiaohui;
Mandlik, Anjali;
Hubbard, Troy;
Davis, Brigid M.;
Waldor, Matthew K.

Publication type:

Article

The PXDLS linear motif regulates circadian rhythmicity through protein–protein interactions.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 11879, doi. 10.1093/nar/gku873

By:

Shalev, Moran;
Aviram, Rona;
Adamovich, Yaarit;
Kraut-Cohen, Judith;
Shamia, Tal;
Ben-Dor, Shifra;
Golik, Marina;
Asher, Gad

Publication type:

Article

A split intein T7 RNA polymerase for transcriptional AND-logic.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12322, doi. 10.1093/nar/gku884

By:

Schaerli, Yolanda;
Gili, Magüi;
Isalan, Mark

Publication type:

Article

RAD51B plays an essential role during somatic and meiotic recombination in Physcomitrella.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 11965, doi. 10.1093/nar/gku890

By:

Charlot, Florence;
Chelysheva, Liudmila;
Kamisugi, Yasuko;
Vrielynck, Nathalie;
Guyon, Anouchka;
Epert, Aline;
Guin, Sylvia Le;
Schaefer, Didier G.;
Cuming, Andrew C.;
Grelon, Mathilde;
Nogué, Fabien

Publication type:

Article

The non-canonical hydroxylase structure of YfcM reveals a metal ion-coordination motif required for EF-P hydroxylation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12295, doi. 10.1093/nar/gku898

By:

Kobayashi, Kan;
Katz, Assaf;
Rajkovic, Andrei;
Ishii, Ryohei;
Branson, Owen E.;
Freitas, Michael A.;
Ishitani, Ryuichiro;
Ibba, Michael;
Nureki, Osamu

Publication type:

Article

Modification-dependent restriction endonuclease, MspJI, flips 5-methylcytosine out of the DNA helix.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12092, doi. 10.1093/nar/gku871

By:

Horton, John R.;
Wang, Hua;
Mabuchi, Megumu Yamada;
Zhang, Xing;
Roberts, Richard J.;
Zheng, Yu;
Wilson, Geoffrey G.;
Cheng, Xiaodong

Publication type:

Article

Mechanism of retinoic acid-induced transcription: histone code, DNA oxidation and formation of chromatin loops.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12329, doi. 10.1093/nar/gku958

By:

Zuchegna, C.;
Aceto, F.;
Bertoni, A.;
Romano, A.;
Perillo, B.;
Laccetti, P.;
Gottesman, M. E.;
Avvedimento, E. V.;
Porcellini, A.

Publication type:

Article

Shape matters: size-exclusion HPLC for the study of nucleic acid structural polymorphism.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. e149, doi. 10.1093/nar/gku751

By:

Largy, Eric;
Mergny, Jean-Louis

Publication type:

Article

ClpXP protease targets long-lived DNA translocation states of a helicase-like motor to cause restriction alleviation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12082, doi. 10.1093/nar/gku851

By:

Simons, Michelle;
Diffin, Fiona M.;
Szczelkun, Mark D.

Publication type:

Article

Multiplex CRISPR/Cas9-based genome engineering from a single lentiviral vector.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. e147, doi. 10.1093/nar/gku749

By:

Kabadi, Ami M.;
Ousterout, David G.;
Hilton, Isaac B.;
Gersbach, Charles A.

Publication type:

Article

Structure of the complete bacterial SRP Alu domain.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12284, doi. 10.1093/nar/gku883

By:

Kempf, Georg;
Wild, Klemens;
Sinning, Irmgard

Publication type:

Article

Removal of 8-oxo-GTP by MutT hydrolase is not a major contributor to transcriptional fidelity.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12015, doi. 10.1093/nar/gku912

By:

Gordon, Alasdair J.E.;
Satory, Dominik;
Wang, Mengyu;
Halliday, Jennifer A.;
Golding, Ido;
Herman, Christophe

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 19, p. iii, doi. 10.1093/nar/gku056
Publication type:: Article

Quantification of DNA-associated proteins inside eukaryotic cells using single-molecule localization microscopy.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. e146, doi. 10.1093/nar/gku726

By:

Etheridge, Thomas J.;
Boulineau, Rémi L.;
Herbert, Alex;
Watson, Adam T.;
Daigaku, Yasukazu;
Tucker, Jem;
George, Sophie;
Jönsson, Peter;
Palayret, Matthieu;
Lando, David;
Laue, Ernest;
Osborne, Mark A.;
Klenerman, David;
Lee, Steven F.;
Carr, Antony M.

Publication type:

Article

CTCF induces histone variant incorporation, erases the H3K27me3 histone mark and opens chromatin.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 11941, doi. 10.1093/nar/gku937

By:

Weth, Oliver;
Paprotka, Christine;
Günther, Katharina;
Schulte, Astrid;
Baierl, Manuel;
Leers, Joerg;
Galjart, Niels;
Renkawitz, Rainer

Publication type:

Article

A genome-wide function of THSC/TREX-2 at active genes prevents transcription–replication collisions.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12000, doi. 10.1093/nar/gku906

By:

Santos-Pereira, José M.;
García-Rubio, María L.;
González-Aguilera, Cristina;
Luna, Rosa;
Aguilera, Andrés

Publication type:

Article

Paramecium tetraurelia chromatin assembly factor-1-like protein PtCAF-1 is involved in RNA-mediated control of DNA elimination.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 11952, doi. 10.1093/nar/gku874

By:

Ignarski, Michael;
Singh, Aditi;
Swart, Estienne C.;
Arambasic, Miroslav;
Sandoval, Pamela Y.;
Nowacki, Mariusz

Publication type:

Article

Homodimerization of HYL1 ensures the correct selection of cleavage sites in primary miRNA.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12224, doi. 10.1093/nar/gku907

By:

Yang, Xi;
Ren, Wenqing;
Zhao, Qiuxia;
Zhang, Peng;
Wu, Feijie;
He, Yuke

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 19, p. i, doi. 10.1093/nar/gku010
Publication type:: Article

A novel AP-1/miR-101 regulatory feedback loop and its implication in the migration and invasion of hepatoma cells.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12041, doi. 10.1093/nar/gku872

By:

Liu, Jing-Jing;
Lin, Xue-Jia;
Yang, Xiao-Jing;
Zhou, Liangji;
He, Shuai;
Zhuang, Shi-Mei;
Yang, Jine

Publication type:

Article

Ribosome-controlled transcription termination is essential for the production of antibiotic microcin C.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 11891, doi. 10.1093/nar/gku880

By:

Zukher, Inna;
Novikova, Maria;
Tikhonov, Anton;
Nesterchuk, Mikhail V.;
Osterman, Ilya A.;
Djordjevic, Marko;
Sergiev, Petr V.;
Sharma, Cynthia M.;
Severinov, Konstantin

Publication type:

Article

Efficient in silico exploration of RNA interhelical conformations using Euler angles and WExplore.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12126, doi. 10.1093/nar/gku799

By:

Dickson, Alex;
Mustoe, Anthony M.;
Salmon, Loïc;
Brooks, Charles L.

Publication type:

Article

ETS1 is a genome-wide effector of RAS/ERK signaling in epithelial cells.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 11928, doi. 10.1093/nar/gku929

By:

Plotnik, Joshua P.;
Budka, Justin A.;
Ferris, Mary W.;
Hollenhorst, Peter C.

Publication type:

Article

HSP90α plays an important role in piRNA biogenesis and retrotransposon repression in mouse.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 11903, doi. 10.1093/nar/gku881

By:

Ichiyanagi, Tomoko;
Ichiyanagi, Kenji;
Ogawa, Ayako;
Kuramochi-Miyagawa, Satomi;
Nakano, Toru;
Chuma, Shinichiro;
Sasaki, Hiroyuki;
Udono, Heiichiro

Publication type:

Article

eIF5 and eIF5B together stimulate 48S initiation complex formation during ribosomal scanning.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12052, doi. 10.1093/nar/gku877

By:

Pisareva, Vera P.;
Pisarev, Andrey V.

Publication type:

Article

A dsRNA-binding protein of a complex invertebrate DNA virus suppresses the Drosophila RNAi response.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12237, doi. 10.1093/nar/gku910

By:

Bronkhorst, Alfred W.;
van Cleef, Koen W.R.;
Venselaar, Hanka;
van Rij, Ronald P.

Publication type:

Article

Capping of vesicular stomatitis virus pre-mRNA is required for accurate selection of transcription stop–start sites and virus propagation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12112, doi. 10.1093/nar/gku901

By:

Ogino, Tomoaki

Publication type:

Article

PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 19, p. 12330, doi. 10.1093/nar/gku902

By:

Hu, J.C.;
Sherlock, G.;
Siegele, D.A.;
Aleksander, S.A.;
Ball, C.A.;
Demeter, J.;
Gouni, S.;
Holland, T.A.;
Karp, P.D.;
Lewis, J.E.;
Liles, N.M.;
McIntosh, B.K.;
Mi, H.;
Muruganujan, A.;
Wymore, F.;
Thomas, P.D.

Publication type:

Article