Works matching IS 03051048 AND DT 2014 AND VI 42 AND IP 18

Results: 57

Molecular mechanisms of two-component system RhpRS regulating type III secretion system in Pseudomonas syringae.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11472, doi. 10.1093/nar/gku865

By:

Deng, Xin;
Liang, Haihua;
Chen, Kai;
He, Chuan;
Lan, Lefu;
Tang, Xiaoyan

Publication type:

Article

Silkworm HP1a transcriptionally enhances highly expressed euchromatic genes via association with their transcription start sites.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11462, doi. 10.1093/nar/gku862

By:

Shoji, Keisuke;
Hara, Kahori;
Kawamoto, Munetaka;
Kiuchi, Takashi;
Kawaoka, Shinpei;
Sugano, Sumio;
Shimada, Toru;
Suzuki, Yutaka;
Katsuma, Susumu

Publication type:

Article

A high-resolution network model for global gene regulation in Mycobacterium tuberculosis.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11291, doi. 10.1093/nar/gku777

By:

Peterson, Eliza J.R.;
Reiss, David J.;
Turkarslan, Serdar;
Minch, Kyle J.;
Rustad, Tige;
Plaisier, Christopher L.;
Longabaugh, William J.R.;
Sherman, David R.;
Baliga, Nitin S.

Publication type:

Article

Selective microRNA uridylation by Zcchc6 (TUT7) and Zcchc11 (TUT4).

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11777, doi. 10.1093/nar/gku805

By:

Thornton, James E.;
Du, Peng;
Jing, Lili;
Sjekloca, Ljiljana;
Lin, Shuibin;
Grossi, Elena;
Sliz, Piotr;
Zon, Leonard I.;
Gregory, Richard I.

Publication type:

Article

Strong DNA deformation required for extremely slow DNA threading intercalation by a binuclear ruthenium complex.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11634, doi. 10.1093/nar/gku859

By:

Almaqwashi, Ali A.;
Paramanathan, Thayaparan;
Lincoln, Per;
Rouzina, Ioulia;
Westerlund, Fredrik;
Williams, Mark C.

Publication type:

Article

Genome-wide and single-cell analyses reveal a context dependent relationship between CBP recruitment and gene expression.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11363, doi. 10.1093/nar/gku827

By:

Kasper, Lawryn H.;
Qu, Chunxu;
Obenauer, John C.;
McGoldrick, Daniel J.;
Brindle, Paul K.

Publication type:

Article

Nova1 is a master regulator of alternative splicing in pancreatic beta cells.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11818, doi. 10.1093/nar/gku861

By:

Villate, Olatz;
Turatsinze, Jean-Valery;
Mascali, Loriana G.;
Grieco, Fabio A.;
Nogueira, Tatiane C.;
Cunha, Daniel A.;
Nardelli, Tarlliza R.;
Sammeth, Michael;
Salunkhe, Vishal A.;
Esguerra, Jonathan L. S.;
Eliasson, Lena;
Marselli, Lorella;
Marchetti, Piero;
Eizirik, Decio L.

Publication type:

Article

The RIG-I ATPase core has evolved a functional requirement for allosteric stabilization by the Pincer domain.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11601, doi. 10.1093/nar/gku817

By:

Rawling, David C.;
Kohlway, Andrew S.;
Luo, Dahai;
Ding, Steve C.;
Pyle, Anna Marie

Publication type:

Article

Interactions of the yeast mitochondrial RNA polymerase with the +1 and +2 promoter bases dictate transcription initiation efficiency.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11721, doi. 10.1093/nar/gku868

By:

Deshpande, Aishwarya P.;
Patel, Smita S.

Publication type:

Article

Tls1 regulates splicing of shelterin components to control telomeric heterochromatin assembly and telomere length.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11419, doi. 10.1093/nar/gku842

By:

Wang, Jiyong;
Tadeo, Xavier;
Hou, Haitong;
Andrews, Stuart;
Moresco, James J.;
Yates, John R.;
Nagy, Peter L.;
Jia, Songtao

Publication type:

Article

Selective recognition of parallel and anti-parallel thrombin-binding aptamer G-quadruplexes by different fluorescent dyes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11612, doi. 10.1093/nar/gku833

By:

Zhao, Dan;
Dong, Xiongwei;
Jiang, Nan;
Zhang, Dan;
Liu, Changlin

Publication type:

Article

Structural and energetic characterization of the major DNA adduct formed from the food mutagen ochratoxin A in the NarI hotspot sequence: influence of adduct ionization on the conformational preferences and implications for the NER propensity.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11831, doi. 10.1093/nar/gku821

By:

Sharma, Purshotam;
Manderville, Richard A.;
Wetmore, Stacey D.

Publication type:

Article

The transcriptional co-repressor TLE3 suppresses basal signaling on a subset of estrogen receptor α target genes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11339, doi. 10.1093/nar/gku791

By:

Jangal, Maïka;
Couture, Jean-Philippe;
Bianco, Stéphanie;
Magnani, Luca;
Mohammed, Hisham;
Gévry, Nicolas

Publication type:

Article

A gemcitabine sensitivity screen identifies a role for NEK9 in the replication stress response.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11517, doi. 10.1093/nar/gku840

By:

Smith, Scott C.;
Petrova, Aleksandra V.;
Madden, Matthew Z.;
Wang, Hongyan;
Pan, Yunfeng;
Warren, Matthew D.;
Hardy, Claire W.;
Liang, Dong;
Liu, Elaine A.;
Robinson, M. Hope;
Rudra, Soumon;
Wang, Jie;
Ehdaivand, Shahrzad;
Torres, Mylin A.;
Wang, Ya;
Yu, David S.

Publication type:

Article

The methyltransferase domain of dengue virus protein NS5 ensures efficient RNA synthesis initiation and elongation by the polymerase domain.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11642, doi. 10.1093/nar/gku666

By:

Potisopon, Supanee;
Priet, Stéphane;
Collet, Axelle;
Decroly, Etienne;
Canard, Bruno;
Selisko, Barbara

Publication type:

Article

leeHom: adaptor trimming and merging for Illumina sequencing reads.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. e141, doi. 10.1093/nar/gku699

By:

Renaud, Gabriel;
Stenzel, Udo;
Kelso, Janet

Publication type:

Article

Efficient DNA ligation in DNA-RNA hybrid helices by Chlorella virus DNA ligase.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11846, doi. 10.1093/nar/gku792

By:

Lohman, G. J.;
Zhang, Y.;
Zhelkovsky, A. M.;
Cantor, E. J.;
Evans, T. C.

Publication type:

Article

The multidrug ABC transporter BmrC/BmrD of Bacillus subtilis is regulated via a ribosome-mediated transcriptional attenuation mechanism.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11393, doi. 10.1093/nar/gku832

By:

Reilman, Ewoud;
Mars, Ruben A. T.;
van Dijl, Jan Maarten;
Denham, Emma L.

Publication type:

Article

BRCA1 modulates the autophosphorylation status of DNA-PKcs in S phase of the cell cycle.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11487, doi. 10.1093/nar/gku824

By:

Davis, Anthony J.;
Chi, Linfeng;
So, Sairei;
Lee, Kyung-Jong;
Mori, Eiichiro;
Fattah, Kazi;
Yang, Jun;
Chen, David J.

Publication type:

Article

Tumor-targeted in vivo gene silencing via systemic delivery of cRGD-conjugated siRNA.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11805, doi. 10.1093/nar/gku831

By:

Liu, Xiaoxia;
Wang, Wei;
Samarsky, Dmitry;
Liu, Li;
Xu, Qian;
Zhang, Wenqing;
Zhu, Guangzu;
Wu, Ping;
Zuo, Xialin;
Deng, Houliang;
Zhang, Jingjing;
Wu, Zhuomin;
Chen, Xiaohui;
Zhao, Lingfeng;
Qiu, Zhiyong;
Zhang, Zhongyi;
Zeng, Qiyi;
Yang, Wei;
Zhang, Biliang;
Ji, Aimin

Publication type:

Article

Topological constraints are major determinants of tRNA tertiary structure and dynamics and provide basis for tertiary folding cooperativity.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11792, doi. 10.1093/nar/gku807

By:

Mustoe, Anthony M.;
Brooks, Charles L.;
Al-Hashimi, Hashim M.

Publication type:

Article

FBXL5-mediated degradation of single-stranded DNA-binding protein hSSB1 controls DNA damage response.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11560, doi. 10.1093/nar/gku876

By:

Chen, Zhi-Wei;
Liu, Bin;
Tang, Nai-Wang;
Xu, Yun-Hua;
Ye, Xiang-Yun;
Li, Zi-Ming;
Niu, Xiao-Min;
Shen, Sheng-Ping;
Lu, Shun;
Xu, Ling

Publication type:

Article

Unraveling the sequence-dependent polymorphic behavior of d(CpG) steps in B-DNA.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11304, doi. 10.1093/nar/gku809

By:

Dans, Pablo Daniel;
Faustino, Ignacio;
Battistini, Federica;
Zakrzewska, Krystyna;
Lavery, Richard;
Orozco, Modesto

Publication type:

Article

Replication stress by Py–Im polyamides induces a non-canonical ATR-dependent checkpoint response.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11546

By:

Martínez, Thomas F.;
Phillips, John W.;
Karanja, Kenneth K.;
Polaczek, Piotr;
Wang, Chieh-Mei;
Li, Benjamin C.;
Campbell, Judith L.;
Dervan, Peter B.

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 18, p. iii, doi. 10.1093/nar/gku055
Publication type:: Article

Absolute and relative quantification of RNA modifications via biosynthetic isotopomers.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. e142, doi. 10.1093/nar/gku733

By:

Kellner, Stefanie;
Ochel, Antonia;
Thüring, Kathrin;
Spenkuch, Felix;
Neumann, Jennifer;
Sharma, Sunny;
Entian, Karl-Dieter;
Schneider, Dirk;
Helm, Mark

Publication type:

Article

RecQ-core of BLM unfolds telomeric G-quadruplex in the absence of ATP.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11528, doi. 10.1093/nar/gku856

By:

Budhathoki, Jagat B.;
Ray, Sujay;
Urban, Vaclav;
Janscak, Pavel;
Yodh, Jaya G.;
Balci, Hamza

Publication type:

Article

Two ZNF509 (ZBTB49) isoforms induce cell-cycle arrest by activating transcription of p21/CDKN1A and RB upon exposure to genotoxic stress.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11447, doi. 10.1093/nar/gku857

By:

Jeon, Bu-Nam;
Kim, Min-Kyeong;
Yoon, Jae-Hyeon;
Kim, Min-Young;
An, Haemin;
Noh, Hee-Jin;
Choi, Won-Il;
Koh, Dong-In;
Hur, Man-Wook

Publication type:

Article

Untitled.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 18, p. 11847
Publication type:: Article

Mechanism of allosteric inhibition of HIV-1 reverse transcriptase revealed by single-molecule and ensemble fluorescence.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11687, doi. 10.1093/nar/gku819

By:

Schauer, Grant D.;
Huber, Kelly D.;
Leuba, Sanford H.;
Sluis-Cremer, Nicolas

Publication type:

Article

COMET: adaptive context-based modeling for ultrafast HIV-1 subtype identification.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. e144, doi. 10.1093/nar/gku739

By:

Struck, Daniel;
Lawyer, Glenn;
Ternes, Anne-Marie;
Schmit, Jean-Claude;
Bercoff, Danielle Perez

Publication type:

Article

Chromosome position effects on gene expression in Escherichia coli K-12.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11383, doi. 10.1093/nar/gku828

By:

Bryant, Jack A.;
Sellars, Laura E.;
Busby, Stephen J. W.;
Lee, David J.

Publication type:

Article

What makes the lac-pathway switch: identifying the fluctuations that trigger phenotype switching in gene regulatory systems.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11321, doi. 10.1093/nar/gku839

By:

Bhogale, Prasanna M.;
Sorg, Robin A.;
Veening, Jan-Willem;
Berg, Johannes

Publication type:

Article

Nucleic Acids Research: Editorial Board.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 18, p. ii, doi. 10.1093/nar/gku032
Publication type:: Article

Global MEF2 target gene analysis in cardiac and skeletal muscle reveals novel regulation of DUSP6 by p38MAPK-MEF2 signaling.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11349, doi. 10.1093/nar/gku813

By:

Wales, Stephanie;
Hashemi, Sara;
Blais, Alexandre;
McDermott, John C.

Publication type:

Article

Monomeric nature of dengue virus NS3 helicase and thermodynamic analysis of the interaction with single-stranded RNA.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11668, doi. 10.1093/nar/gku812

By:

Gebhard, Leopoldo G.;
Incicco, J. Jeremías;
Smal, Clara;
Gallo, Mariana;
Gamarnik, Andrea V.;
Kaufman, Sergio B.

Publication type:

Article

Triple helical DNA in a duplex context and base pair opening.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11329, doi. 10.1093/nar/gku848

By:

Esguerra, Mauricio;
Nilsson, Lennart;
Villa, Alessandra

Publication type:

Article

Complete RNA inverse folding: computational design of functional hammerhead ribozymes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11752, doi. 10.1093/nar/gku740

By:

Dotu, Ivan;
Garcia-Martin, Juan Antonio;
Slinger, Betty L.;
Mechery, Vinodh;
Meyer, Michelle M.;
Clote, Peter

Publication type:

Article

The cytoplasmic poly(A) polymerases GLD-2 and GLD-4 promote general gene expression via distinct mechanisms.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11622, doi. 10.1093/nar/gku838

By:

Nousch, Marco;
Yeroslaviz, Assa;
Habermann, Bianca;
Eckmann, Christian R.

Publication type:

Article

Invincible DNA tethers: covalent DNA anchoring for enhanced temporal and force stability in magnetic tweezers experiments.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. e137, doi. 10.1093/nar/gku677

By:

Janissen, Richard;
Berghuis, Bojk A.;
Dulin, David;
Wink, Max;
van Laar, Theo;
Dekker, Nynke H.

Publication type:

Article

SSX2 is a novel DNA-binding protein that antagonizes polycomb group body formation and gene repression.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11433, doi. 10.1093/nar/gku852

By:

Gjerstorff, Morten Frier;
Relster, Mette Marie;
Greve, Katrine Buch Viden;
Moeller, Jesper Bonnet;
Elias, Daniel;
Lindgreen, Jonas Nørrelund;
Schmidt, Steffen;
Mollenhauer, Jan;
Voldborg, Bjørn;
Pedersen, Christina Bøg;
Brückmann, Nadine Heidi;
Møllegaard, Niels Erik;
Ditzel, Henrik Jørn

Publication type:

Article

Endogenous polyamine function—the RNA perspective.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11275, doi. 10.1093/nar/gku837

By:

Lightfoot, Helen L.;
Hall, Jonathan

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 18, p. i, doi. 10.1093/nar/gku009
Publication type:: Article

Non-metastatic 2 (NME2)-mediated suppression of lung cancer metastasis involves transcriptional regulation of key cell adhesion factor vinculin.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11589, doi. 10.1093/nar/gku860

By:

Thakur, Ram Krishna;
Yadav, Vinod Kumar;
Kumar, Akinchan;
Singh, Ankita;
Pal, Krishnendu;
Hoeppner, Luke;
Saha, Dhurjhoti;
Purohit, Gunjan;
Basundra, Richa;
Kar, Anirban;
Halder, Rashi;
Kumar, Pankaj;
Baral, Aradhita;
Kumar, MJ Mahesh;
Baldi, Alfonso;
Vincenzi, Bruno;
Lorenzon, Laura;
Banerjee, Rajkumar;
Kumar, Praveen;
Shridhar, Viji

Publication type:

Article

AP endonucleases process 5-methylcytosine excision intermediates during active DNA demethylation in Arabidopsis.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11408, doi. 10.1093/nar/gku834

By:

Lee, Jiyoon;
Jang, Hosung;
Shin, Hosub;
Choi, Woo Lee;
Mok, Young Geun;
Huh, Jin Hoe

Publication type:

Article

Direct entry by RNase E is a major pathway for the degradation and processing of RNA in Escherichia coli.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11733, doi. 10.1093/nar/gku808

By:

Clarke, Justin E.;
Kime, Louise;
Romero A., David;
McDowall, Kenneth J.

Publication type:

Article

Human germline and pan-cancer variomes and their distinct functional profiles.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11570, doi. 10.1093/nar/gku772

By:

Pan, Yang;
Karagiannis, Konstantinos;
Zhang, Haichen;
Dingerdissen, Hayley;
Shamsaddini, Amirhossein;
Wan, Quan;
Simonyan, Vahan;
Mazumder, Raja

Publication type:

Article

Ms1, a novel sRNA interacting with the RNA polymerase core in mycobacteria.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11763

By:

Hnilicová, Jarmila;
Jirát Matějčková, Jitka;
Šiková, Michaela;
Pospíšil, Jiří;
Halada, Petr;
Pánek, Josef;
Krásný, Libor

Publication type:

Article

Single-molecule analysis uncovers the difference between the kinetics of DNA decatenation by bacterial topoisomerases I and III.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11657, doi. 10.1093/nar/gku785

By:

Terekhova, Ksenia;
Marko, John F.;
Mondragón, Alfonso

Publication type:

Article

Simultaneous binding to the tracking strand, displaced strand and the duplex of a DNA fork enhances unwinding by Dda helicase.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11707, doi. 10.1093/nar/gku845

By:

Aarattuthodiyil, Suja;
Byrd, Alicia K.;
Raney, Kevin D.

Publication type:

Article