Works matching IS 03051048 AND DT 2014 AND VI 42 AND IP 14

Results: 67

In vivo co-localization of enzymes on RNA scaffolds increases metabolic production in a geometrically dependent manner.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9493, doi. 10.1093/nar/gku617

By:

Sachdeva, Gairik;
Garg, Abhishek;
Godding, David;
Way, Jeffrey C.;
Silver, Pamela A.

Publication type:

Article

Engineering modular and tunable genetic amplifiers for scaling transcriptional signals in cascaded gene networks.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9484, doi. 10.1093/nar/gku593

By:

Wang, Baojun;
Barahona, Mauricio;
Buck, Martin

Publication type:

Article

Embryonic stem cell-specific microRNAs contribute to pluripotency by inhibiting regulators of multiple differentiation pathways.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9313, doi. 10.1093/nar/gku544

By:

Gruber, Andreas J.;
Grandy, William A.;
Balwierz, Piotr J.;
Dimitrova, Yoana A.;
Pachkov, Mikhail;
Ciaudo, Constance;
Nimwegen, Erik van;
Zavolan, Mihaela

Publication type:

Article

Evidence of efficient stop codon readthrough in four mammalian genes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 8928, doi. 10.1093/nar/gku608

By:

Loughran, Gary;
Chou, Ming-Yuan;
Ivanov, Ivaylo P.;
Jungreis, Irwin;
Kellis, Manolis;
Kiran, Anmol M.;
Baranov, Pavel V.;
Atkins, John F.

Publication type:

Article

FANCM-associated proteins MHF1 and MHF2, but not the other Fanconi anemia factors, limit meiotic crossovers.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9087, doi. 10.1093/nar/gku614

By:

Girard, Chloe;
Crismani, Wayne;
Froger, Nicole;
Mazel, Julien;
Lemhemdi, Afef;
Horlow, Christine;
Mercier, Raphael

Publication type:

Article

Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. e115, doi. 10.1093/nar/gku537

By:

Giallonardo, Francesca Di;
Töpfer, Armin;
Rey, Melanie;
Prabhakaran, Sandhya;
Duport, Yannick;
Leemann, Christine;
Schmutz, Stefan;
Campbell, Nottania K.;
Joos, Beda;
Lecca, Maria Rita;
Patrignani, Andrea;
Däumer, Martin;
Beisel, Christian;
Rusert, Peter;
Trkola, Alexandra;
Günthard, Huldrych F.;
Roth, Volker;
Beerenwinkel, Niko;
Metzner, Karin J.

Publication type:

Article

VNTRseek—a computational tool to detect tandem repeat variants in high-throughput sequencing data.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 8884, doi. 10.1093/nar/gku642

By:

Gelfand, Yevgeniy;
Hernandez, Yozen;
Loving, Joshua;
Benson, Gary

Publication type:

Article

Acute hypoxia affects P-TEFb through HDAC3 and HEXIM1-dependent mechanism to promote gene-specific transcriptional repression.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 8954, doi. 10.1093/nar/gku611

By:

Safronova, Olga S.;
Nakahama, Ken-Ichi;
Morita, Ikuo

Publication type:

Article

metaseq: a Python package for integrative genome-wide analysis reveals relationships between chromatin insulators and associated nuclear mRNA.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9158, doi. 10.1093/nar/gku644

By:

Dale, Ryan K.;
Matzat, Leah H.;
Lei, Elissa P.

Publication type:

Article

5′ isomiR variation is of functional and evolutionary importance.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9424, doi. 10.1093/nar/gku656

By:

Tan, Geok Chin;
Chan, Elcie;
Molnar, Attila;
Sarkar, Rupa;
Alexieva, Diana;
Isa, Ihsan Mad;
Robinson, Sophie;
Zhang, Shuchen;
Ellis, Peter;
Langford, Cordelia F.;
Guillot, Pascale V.;
Chandrashekran, Anil;
Fisk, Nick M.;
Castellano, Leandro;
Meister, Gunter;
Winston, Robert M.;
Cui, Wei;
Baulcombe, David;
Dibb, Nick J.

Publication type:

Article

Discovery of the β-barrel–type RNA methyltransferase responsible for N6-methylation of N6-threonylcarbamoyladenosine in tRNAs.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9350, doi. 10.1093/nar/gku618

By:

Kimura, Satoshi;
Miyauchi, Kenjyo;
Ikeuchi, Yoshiho;
Thiaville, Patrick C.;
Crécy-Lagard, Valérie de;
Suzuki, Tsutomu

Publication type:

Article

Antagonistic control of a dual-input mammalian gene switch by food additives.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. e116, doi. 10.1093/nar/gku545

By:

Xie, Mingqi;
Ye, Haifeng;
Hamri, Ghislaine Charpin-El;
Fussenegger, Martin

Publication type:

Article

Inhibition of RNA binding to hepatitis C virus RNA-dependent RNA polymerase: a new mechanism for antiviral intervention.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9399, doi. 10.1093/nar/gku632

By:

Ahmed-Belkacem, Abdelhakim;
Guichou, Jean-François;
Brillet, Rozenn;
Ahnou, Nazim;
Hernandez, Eva;
Pallier, Coralie;
Pawlotsky, Jean-Michel

Publication type:

Article

Physiological state co-regulates thousands of mammalian mRNA splicing events at tandem splice sites and alternative exons.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 8895, doi. 10.1093/nar/gku532

By:

Szafranski, Karol;
Fritsch, Claudia;
Schumann, Frank;
Siebel, Lisa;
Sinha, Rileen;
Hampe, Jochen;
Hiller, Michael;
Englert, Christoph;
Huse, Klaus;
Platzer, Matthias

Publication type:

Article

Formation of circular polyribosomes on eukaryotic mRNA without cap-structure and poly(A)-tail: a cryo electron tomography study.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9461, doi. 10.1093/nar/gku599

By:

Afonina, Zhanna A.;
Myasnikov, Alexander G.;
Shirokov, Vladimir A.;
Klaholz, Bruno P.;
Spirin, Alexander S.

Publication type:

Article

Engineering self-contained DNA circuit for proximity recognition and localized signal amplification of target biomolecules.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9523, doi. 10.1093/nar/gku655

By:

Ang, Yan Shan;
Yung, Lin-Yue Lanry

Publication type:

Article

The RNA-mediated, asymmetric ring regulatory mechanism of the transcription termination Rho helicase decrypted by time-resolved Nucleotide Analog Interference Probing (trNAIP).

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9270, doi. 10.1093/nar/gku595

By:

Soares, Emilie;
Schwartz, Annie;
Nollmann, Marcello;
Margeat, Emmanuel;
Boudvillain, Marc

Publication type:

Article

Design and characterization of a dual-mode promoter with activation and repression capability for tuning gene expression in yeast.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9514, doi. 10.1093/nar/gku651

By:

Mazumder, Mostafizur;
McMillen, David R.

Publication type:

Article

ARH-seq: identification of differential splicing in RNA-seq data.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. e110, doi. 10.1093/nar/gku495

By:

Rasche, Axel;
Lienhard, Matthias;
Yaspo, Marie-Laure;
Lehrach, Hans;
Herwig, Ralf

Publication type:

Article

G-quadruplexes are specifically recognized and distinguished by selected designed ankyrin repeat proteins.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9182, doi. 10.1093/nar/gku571

By:

Scholz, Oliver;
Hansen, Simon;
Plückthun, Andreas

Publication type:

Article

Is an observed non-co-linear RNA product spliced in trans, in cis or just in vitro?

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9410, doi. 10.1093/nar/gku643

By:

Yu, Chun-Ying;
Liu, Hsiao-Jung;
Hung, Li-Yuan;
Kuo, Hung-Chih;
Chuang, Trees-Juen

Publication type:

Article

Engineered TAL Effector modulators for the large-scale gain-of-function screening.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. e114, doi. 10.1093/nar/gku535

By:

Zhang, Hanshuo;
Li, Juan;
Hou, Sha;
Wang, Gancheng;
Jiang, Mingjun;
Sun, Changhong;
Hu, Xiongbing;
Zhuang, Fengfeng;
Dai, Zhifei;
Dai, Junbiao;
Xi, Jianzhong Jeff

Publication type:

Article

G-quadruplexes within prion mRNA: the missing link in prion disease?

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9327, doi. 10.1093/nar/gku559

By:

Olsthoorn, René C.L.

Publication type:

Article

Genomic organization and evolution of double minutes/homogeneously staining regions with MYC amplification in human cancer.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9131, doi. 10.1093/nar/gku590

By:

L'Abbate, Alberto;
Macchia, Gemma;
D'Addabbo, Pietro;
Lonoce, Angelo;
Tolomeo, Doron;
Trombetta, Domenico;
Kok, Klaas;
Bartenhagen, Christoph;
Whelan, Christopher W.;
Palumbo, Orazio;
Severgnini, Marco;
Cifola, Ingrid;
Dugas, Martin;
Carella, Massimo;
De Bellis, Gianluca;
Rocchi, Mariano;
Carbone, Lucia;
Storlazzi, Clelia Tiziana

Publication type:

Article

The structural code of cyanobacterial genomes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 8873, doi. 10.1093/nar/gku641

By:

Lehmann, Robert;
Machné, Rainer;
Herzel, Hanspeter

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 14, p. iii, doi. 10.1093/nar/gku051
Publication type:: Article

Activity-associated miRNA are packaged in Map1b-enriched exosomes released from depolarized neurons.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9195, doi. 10.1093/nar/gku594

By:

Goldie, Belinda J.;
Dun, Matthew D.;
Lin, Minjie;
Smith, Nathan D.;
Verrills, Nicole M.;
Dayas, Christopher V.;
Cairns, Murray J.

Publication type:

Article

dREAM co-operates with insulator-binding proteins and regulates expression at divergently paired genes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 8939, doi. 10.1093/nar/gku609

By:

Korenjak, Michael;
Kwon, Eunjeong;
Morris, Robert T.;
Anderssen, Endre;
Amzallag, Arnaud;
Ramaswamy, Sridhar;
Dyson, Nicholas J.

Publication type:

Article

Major capsid reinforcement by a minor protein in herpesviruses and phage.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9096, doi. 10.1093/nar/gku634

By:

Sae-Ueng, Udom;
Liu, Ting;
Catalano, Carlos Enrique;
Huffman, Jamie B.;
Homa, Fred L.;
Evilevitch, Alex

Publication type:

Article

A transient disruption of fibroblastic transcriptional regulatory network facilitates trans-differentiation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 8905

By:

Tomaru, Yasuhiro;
Hasegawa, Ryota;
Suzuki, Takahiro;
Sato, Taiji;
Kubosaki, Atsutaka;
Suzuki, Masanori;
Kawaji, Hideya;
Forrest, Alistair R.R.;
Hayashizaki, Yoshihide;
Shin, Jay W.;
Suzuki, Harukazu

Publication type:

Article

Psip1/Ledgf p75 restrains Hox gene expression by recruiting both trithorax and polycomb group proteins.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9021, doi. 10.1093/nar/gku647

By:

Pradeepa, Madapura M.;
Grimes, Graeme R.;
Taylor, Gillian C.A.;
Sutherland, Heidi G.;
Bickmore, Wendy A.

Publication type:

Article

The mammalian INO80 chromatin remodeling complex is required for replication stress recovery.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9074, doi. 10.1093/nar/gku605

By:

Vassileva, Ivelina;
Yanakieva, Iskra;
Peycheva, Michaela;
Gospodinov, Anastas;
Anachkova, Boyka

Publication type:

Article

Spacing requirements for Class I transcription activation in bacteria are set by promoter elements.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9209, doi. 10.1093/nar/gku625

By:

Zhou, Yi;
Kolb, Annie;
Busby, Stephen J.W.;
Wang, Yi-Ping

Publication type:

Article

Crystal structure of DnaT84–153-dT10 ssDNA complex reveals a novel single-stranded DNA binding mode.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9470, doi. 10.1093/nar/gku633

By:

Liu, Zheng;
Chen, Peng;
Wang, Xuejuan;
Cai, Gang;
Niu, Liwen;
Teng, Maikun;
Li, Xu

Publication type:

Article

DNA damage triggers SAF-A and RNA biogenesis factors exclusion from chromatin coupled to R-loops removal.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9047, doi. 10.1093/nar/gku601

By:

Britton, Sébastien;
Dernoncourt, Emma;
Delteil, Christine;
Froment, Carine;
Schiltz, Odile;
Salles, Bernard;
Frit, Philippe;
Calsou, Patrick

Publication type:

Article

Crystal structure of RNase H3–substrate complex reveals parallel evolution of RNA/DNA hybrid recognition.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9285, doi. 10.1093/nar/gku615

By:

Figiel, Małgorzata;
Nowotny, Marcin

Publication type:

Article

The effect of tRNA levels on decoding times of mRNA codons.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9171, doi. 10.1093/nar/gku646

By:

Dana, Alexandra;
Tuller, Tamir

Publication type:

Article

Nucleic Acids Research: Editorial Board.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 14, p. ii, doi. 10.1093/nar/gku028
Publication type:: Article

Phospho-dependent and phospho-independent interactions of the helicase UPF1 with the NMD factors SMG5–SMG7 and SMG6.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9447, doi. 10.1093/nar/gku578

By:

Chakrabarti, Sutapa;
Bonneau, Fabien;
Schüssler, Steffen;
Eppinger, Elfriede;
Conti, Elena

Publication type:

Article

The mRNP remodeling mediated by UPF1 promotes rapid degradation of replication-dependent histone mRNA.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9334, doi. 10.1093/nar/gku610

By:

Choe, Junho;
Ahn, Sang Ho;
Kim, Yoon Ki

Publication type:

Article

ADP-ribosyltransferases Parp1 and Parp7 safeguard pluripotency of ES cells.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 8914, doi. 10.1093/nar/gku591

By:

Roper, Stephen J.;
Chrysanthou, Stephanie;
Senner, Claire E.;
Sienerth, Arnold;
Gnan, Stefano;
Murray, Alexander;
Masutani, Mitsuko;
Latos, Paulina;
Hemberger, Myriam

Publication type:

Article

Sensitive, multiplex and direct quantification of RNA sequences using a modified RASL assay.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9146, doi. 10.1093/nar/gku636

By:

Larman, H. Benjamin;
Scott, Erick R.;
Wogan, Megan;
Oliveira, Glenn;
Torkamani, Ali;
Schultz, Peter G.

Publication type:

Article

Structure, stability and behaviour of nucleic acids in ionic liquids.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 8831, doi. 10.1093/nar/gku499

By:

Tateishi-Karimata, Hisae;
Sugimoto, Naoki

Publication type:

Article

In vitro selection of DNA-cleaving deoxyribozyme with site-specific thymidine excision activity.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9262, doi. 10.1093/nar/gku592

By:

Wang, Mingqi;
Zhang, Huafan;
Zhang, Wei;
Zhao, Yongyun;
Yasmeen, Afshan;
Zhou, Li;
Yu, Xiaoqi;
Tang, Zhuo

Publication type:

Article

Slow repair of lipid peroxidation-induced DNA damage at p53 mutation hotspots in human cells caused by low turnover of a DNA glycosylase.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9033, doi. 10.1093/nar/gku520

By:

Woodrick, Jordan;
Gupta, Suhani;
Khatkar, Pooja;
Sarangi, Sanchita;
Narasimhan, Ganga;
Trehan, Akriti;
Adhikari, Sanjay;
Roy, Rabindra

Publication type:

Article

CRISPR-Cas: an efficient tool for genome engineering of virulent bacteriophages.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9504, doi. 10.1093/nar/gku628

By:

Martel, Bruno;
Moineau, Sylvain

Publication type:

Article

The human Piwi protein Hiwi2 associates with tRNA-derived piRNAs in somatic cells.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 8984, doi. 10.1093/nar/gku620

By:

Keam, Simon P.;
Young, Paul E.;
McCorkindale, Alexandra L.;
Dang, Thurston H.Y.;
Clancy, Jennifer L.;
Humphreys, David T.;
Preiss, Thomas;
Hutvagner, Gyorgy;
Martin, David I.K.;
Cropley, Jennifer E.;
Suter, Catherine M.

Publication type:

Article

Induction and suppression of tick cell antiviral RNAi responses by tick-borne flaviviruses.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9436, doi. 10.1093/nar/gku657

By:

Schnettler, Esther;
Tykalová, Hana;
Watson, Mick;
Sharma, Mayuri;
Sterken, Mark G.;
Obbard, Darren J.;
Lewis, Samuel H.;
McFarlane, Melanie;
Bell-Sakyi, Lesley;
Barry, Gerald;
Weisheit, Sabine;
Best, Sonja M.;
Kuhn, Richard J.;
Pijlman, Gorben P.;
Chase-Topping, Margo E.;
Gould, Ernest A.;
Grubhoffer, Libor;
Fazakerley, John K.;
Kohl, Alain

Publication type:

Article

Comprehensive mutational scanning of a kinase in vivo reveals substrate-dependent fitness landscapes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. e112, doi. 10.1093/nar/gku511

By:

Melnikov, Alexandre;
Rogov, Peter;
Wang, Li;
Gnirke, Andreas;
Mikkelsen, Tarjei S.

Publication type:

Article

Molecular basis of nucleotide-dependent substrate engagement and remodeling by an AAA+ activator.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 14, p. 9249, doi. 10.1093/nar/gku588

By:

Darbari, Vidya C.;
Lawton, Ed;
Lu, Duo;
Burrows, Patricia C.;
Wiesler, Simone;
Joly, Nicolas;
Zhang, Nan;
Zhang, Xiaodong;
Buck, Martin

Publication type:

Article