Works matching IS 03051048 AND DT 2014 AND VI 42 AND IP 13

Results: 61

Priming in the Type I-F CRISPR-Cas system triggers strand-independent spacer acquisition, bi-directionally from the primed protospacer.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8516, doi. 10.1093/nar/gku527

By:

Richter, Corinna;
Dy, Ron L.;
McKenzie, Rebecca E.;
Watson, Bridget N.J.;
Taylor, Corinda;
Chang, James T.;
McNeil, Matthew B.;
Staals, Raymond H.J.;
Fineran, Peter C.

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 13, p. i, doi. 10.1093/nar/gku015
Publication type:: Article

Phosphorothioate oligonucleotides can displace NEAT1 RNA and form nuclear paraspeckle-like structures.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8648, doi. 10.1093/nar/gku579

By:

Shen, Wen;
Liang, Xue-hai;
Crooke, Stanley T.

Publication type:

Article

Analysis of neonatal brain lacking ATRX or MeCP2 reveals changes in nucleosome density, CTCF binding and chromatin looping.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8356, doi. 10.1093/nar/gku564

By:

Kernohan, Kristin D.;
Vernimmen, Douglas;
Gloor, Gregory B.;
Bérubé, Nathalie G.

Publication type:

Article

The elusive evidence for chromothripsis.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8231, doi. 10.1093/nar/gku525

By:

Kinsella, Marcus;
Patel, Anand;
Bafna, Vineet

Publication type:

Article

The Cryptosporidium parvum ApiAP2 gene family: insights into the evolution of apicomplexan AP2 regulatory systems.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8271, doi. 10.1093/nar/gku500

By:

Oberstaller, Jenna;
Pumpalova, Yoanna;
Schieler, Ariel;
Llinás, Manuel;
Kissinger, Jessica C.

Publication type:

Article

Dynamics and stability of polymorphic human telomeric G-quadruplex under tension.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8789, doi. 10.1093/nar/gku581

By:

You, Huijuan;
Zeng, Xiangjun;
Xu, Yue;
Lim, Ci Ji;
Efremov, Artem K.;
Phan, Anh Tuân;
Yan, Jie

Publication type:

Article

Dominant Rio1 kinase/ATPase catalytic mutant induces trapping of late pre-40S biogenesis factors in 80S-like ribosomes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8635, doi. 10.1093/nar/gku542

By:

Ferreira-Cerca, Sébastien;
Kiburu, Irene;
Thomson, Emma;
LaRonde, Nicole;
Hurt, Ed

Publication type:

Article

CBP and p300 acetylate PCNA to link its degradation with nucleotide excision repair synthesis.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8433, doi. 10.1093/nar/gku533

By:

Cazzalini, Ornella;
Sommatis, Sabrina;
Tillhon, Micol;
Dutto, Ilaria;
Bachi, Angela;
Rapp, Alexander;
Nardo, Tiziana;
Scovassi, A. Ivana;
Necchi, Daniela;
Cardoso, M. Cristina;
Stivala, Lucia A.;
Prosperi, Ennio

Publication type:

Article

Structural studies of CNG repeats.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8189, doi. 10.1093/nar/gku536

By:

Kiliszek, Agnieszka;
Rypniewski, Wojciech

Publication type:

Article

Uncoupling of the dynamics of host–pathogen interaction uncovers new mechanisms of viral interferon antagonism at the single-cell level.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. e109, doi. 10.1093/nar/gku492

By:

Rand, Ulfert;
Hillebrand, Upneet;
Sievers, Stephanie;
Willenberg, Steffi;
Köster, Mario;
Hauser, Hansjörg;
Wirth, Dagmar

Publication type:

Article

Citrullination of DNMT3A by PADI4 regulates its stability and controls DNA methylation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8285, doi. 10.1093/nar/gku522

By:

Deplus, Rachel;
Denis, Hélène;
Putmans, Pascale;
Calonne, Emilie;
Fourrez, Marie;
Yamamoto, Kazuhiko;
Suzuki, Akari;
Fuks, François

Publication type:

Article

Spatial confinement is a major determinant of the folding landscape of human chromosomes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8223, doi. 10.1093/nar/gku462

By:

Gürsoy, Gamze;
Xu, Yun;
Kenter, Amy L.;
Liang, Jie

Publication type:

Article

DNA polymerase IV mediates efficient and quick recovery of replication forks stalled at N2-dG adducts.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8461, doi. 10.1093/nar/gku547

By:

Ikeda, Mio;
Furukohri, Asako;
Philippin, Gaelle;
Loechler, Edward;
Akiyama, Masahiro Tatsumi;
Katayama, Tsutomu;
Fuchs, Robert P.;
Maki, Hisaji

Publication type:

Article

Genomic mapping of cAMP receptor protein (CRPMt) in Mycobacterium tuberculosis: relation to transcriptional start sites and the role of CRPMt as a transcription factor.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8320, doi. 10.1093/nar/gku548

By:

Kahramanoglou, Christina;
Cortes, Teresa;
Matange, Nishad;
Hunt, Debbie M.;
Visweswariah, Sandhya S.;
Young, Douglas B.;
Buxton, Roger S.

Publication type:

Article

Quantitative telomerase enzyme activity determination using droplet digital PCR with single cell resolution.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. e104, doi. 10.1093/nar/gku439

By:

Ludlow, Andrew T.;
Robin, Jerome D.;
Sayed, Mohammed;
Litterst, Claudia M.;
Shelton, Dawne N.;
Shay, Jerry W.;
Wright, Woodring E.

Publication type:

Article

Ultrasensitive isolation, identification and quantification of DNA–protein adducts by ELISA-based RADAR assay.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. e108, doi. 10.1093/nar/gku490

By:

Kiianitsa, Kostantin;
Maizels, Nancy

Publication type:

Article

Pif1 regulates telomere length by preferentially removing telomerase from long telomere ends.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8527, doi. 10.1093/nar/gku541

By:

Li, Jing-Ru;
Yu, Tai-Yuan;
Chien, I-Chieh;
Lu, Chia-Ying;
Lin, Jing-Jer;
Li, Hung-Wen

Publication type:

Article

Co-transcriptional recruitment of Puf6 by She2 couples translational repression to mRNA localization.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8692, doi. 10.1093/nar/gku597

By:

Shahbabian, Karen;
Jeronimo, Célia;
Forget, Amélie;
Robert, François;
Chartrand, Pascal

Publication type:

Article

The N-terminus of Mcm10 is important for interaction with the 9-1-1 clamp and in resistance to DNA damage.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8389, doi. 10.1093/nar/gku479

By:

Alver, Robert C.;
Zhang, Tianji;
Josephrajan, Ajeetha;
Fultz, Brandy L.;
Hendrix, Chance J.;
Das-Bradoo, Sapna;
Bielinsky, Anja-Katrin

Publication type:

Article

TET-mediated oxidation of methylcytosine causes TDG or NEIL glycosylase dependent gene reactivation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8592, doi. 10.1093/nar/gku552

By:

Müller, Udo;
Bauer, Christina;
Siegl, Michael;
Rottach, Andrea;
Leonhardt, Heinrich

Publication type:

Article

HRAS is silenced by two neighboring G-quadruplexes and activated by MAZ, a zinc-finger transcription factor with DNA unfolding property.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8379, doi. 10.1093/nar/gku574

By:

Cogoi, Susanna;
Shchekotikhin, Andrey E.;
Xodo, Luigi E.

Publication type:

Article

Mosquito and Drosophila entomobirnaviruses suppress dsRNA- and siRNA-induced RNAi.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8732, doi. 10.1093/nar/gku528

By:

van Cleef, Koen W.R.;
van Mierlo, Joël T.;
Miesen, Pascal;
Overheul, Gijs J.;
Fros, Jelke J.;
Schuster, Susan;
Marklewitz, Marco;
Pijlman, Gorben P.;
Junglen, Sandra;
van Rij, Ronald P.

Publication type:

Article

Revealing transient structures of nucleosomes as DNA unwinds.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8767, doi. 10.1093/nar/gku562

By:

Chen, Yujie;
Tokuda, Joshua M.;
Topping, Traci;
Sutton, Julie L.;
Meisburger, Steve P.;
Pabit, Suzette A.;
Gloss, Lisa M.;
Pollack, Lois

Publication type:

Article

In vivo imaging of protein–protein and RNA–protein interactions using novel far-red fluorescence complementation systems.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. e103, doi. 10.1093/nar/gku408

By:

Han, Yu;
Wang, Shifeng;
Zhang, Zhiping;
Ma, Xiaohe;
Li, Wei;
Zhang, Xiaowei;
Deng, Jiaoyu;
Wei, Hongping;
Li, Zhaoyang;
Zhang, Xian-En;
Cui, Zongqiang

Publication type:

Article

Computational detection and suppression of sequence-specific off-target phenotypes from whole genome RNAi screens.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8214, doi. 10.1093/nar/gku306

By:

Zhong, Rui;
Kim, Jimi;
Kim, Hyun Seok;
Kim, Minsoo;
Lum, Lawrence;
Levine, Beth;
Xiao, Guanghua;
White, Michael A.;
Xie, Yang

Publication type:

Article

The organization of RNA contacts by PTB for regulation of FAS splicing.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8605, doi. 10.1093/nar/gku519

By:

Mickleburgh, Ian;
Kafasla, Panagiota;
Cherny, Dmitry;
Llorian, Miriam;
Curry, Stephen;
Jackson, Richard J.;
Smith, Christopher W.J.

Publication type:

Article

ChIP-Enrich: gene set enrichment testing for ChIP-seq data.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. e105, doi. 10.1093/nar/gku463

By:

Welch, Ryan P.;
Lee, Chee;
Imbriano, Paul M.;
Patil, Snehal;
Weymouth, Terry E.;
Smith, R. Alex;
Scott, Laura J.;
Sartor, Maureen A.

Publication type:

Article

ATM regulates NF-κB-dependent immediate-early genes via RelA Ser 276 phosphorylation coupled to CDK9 promoter recruitment.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8416, doi. 10.1093/nar/gku529

By:

Fang, Ling;
Choudhary, Sanjeev;
Zhao, Yingxin;
Edeh, Chukwudi B;
Yang, Chunying;
Boldogh, Istvan;
Brasier, Allan R.

Publication type:

Article

MegaTevs: single-chain dual nucleases for efficient gene disruption.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8816, doi. 10.1093/nar/gku573

By:

Wolfs, Jason M.;
DaSilva, Matthew;
Meister, Sarah E.;
Wang, Xu;
Schild-Poulter, Caroline;
Edgell, David R.

Publication type:

Article

Nucleic Acids Research: Editorial Board.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 13, p. ii, doi. 10.1093/nar/gku027
Publication type:: Article

Integrated RNA and DNA sequencing improves mutation detection in low purity tumors.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. e107, doi. 10.1093/nar/gku489

By:

Wilkerson, Matthew D.;
Cabanski, Christopher R.;
Sun, Wei;
Hoadley, Katherine A.;
Walter, Vonn;
Mose, Lisle E.;
Troester, Melissa A.;
Hammerman, Peter S.;
Parker, Joel S.;
Perou, Charles M.;
Hayes, D. Neil

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 13, p. iii, doi. 10.1093/nar/gku050
Publication type:: Article

A gain-of-function mouse model identifies PRMT6 as a NF-κB coactivator.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8297, doi. 10.1093/nar/gku530

By:

Di Lorenzo, Alessandra;
Yang, Yanzhong;
Macaluso, Marc;
Bedford, Mark T.

Publication type:

Article

A novel reannotation strategy for dissecting DNA methylation patterns of human long intergenic non-coding RNAs in cancers.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8258, doi. 10.1093/nar/gku575

By:

Zhi, Hui;
Ning, Shangwei;
Li, Xiang;
Li, Yuyun;
Wu, Wei;
Li, Xia

Publication type:

Article

Conjugation with polyamines enhances the antibacterial and anticancer activity of chloramphenicol.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8621, doi. 10.1093/nar/gku539

By:

Kostopoulou, Ourania N.;
Kouvela, Ekaterini C.;
Magoulas, George E.;
Garnelis, Thomas;
Panagoulias, Ioannis;
Rodi, Maria;
Papadopoulos, Georgios;
Mouzaki, Athanasia;
Dinos, George P.;
Papaioannou, Dionissios;
Kalpaxis, Dimitrios L.

Publication type:

Article

Human ISWI complexes are targeted by SMARCA5 ATPase and SLIDE domains to help resolve lesion-stalled transcription.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8473, doi. 10.1093/nar/gku565

By:

Aydin, Özge Z.;
Marteijn, Jurgen A.;
Ribeiro-Silva, Cristina;
Rodríguez López, Aida;
Wijgers, Nils;
Smeenk, Godelieve;
van Attikum, Haico;
Poot, Raymond A.;
Vermeulen, Wim;
Lans, Hannes

Publication type:

Article

Structural dynamics of the two-component response regulator RstA in recognition of promoter DNA element.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8777, doi. 10.1093/nar/gku572

By:

Li, Yi-Chuan;
Chang, Chung-ke;
Chang, Chi-Fon;
Cheng, Ya-Hsin;
Fang, Pei-Ju;
Yu, Tsunai;
Chen, Sheng-Chia;
Li, Yi-Ching;
Hsiao, Chwan-Deng;
Huang, Tai-huang

Publication type:

Article

Molecular evolutionary and structural analysis of the cytosolic DNA sensor cGAS and STING.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8243, doi. 10.1093/nar/gku569

By:

Wu, Xiaomei;
Wu, Fei-Hua;
Wang, Xiaoqiang;
Wang, Lilin;
Siedow, James N.;
Zhang, Weiguo;
Pei, Zhen-Ming

Publication type:

Article

Serial number tagging reveals a prominent sequence preference of retrotransposon integration.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8449, doi. 10.1093/nar/gku534

By:

Chatterjee, Atreyi Ghatak;
Esnault, Caroline;
Guo, Yabin;
Hung, Stevephen;
McQueen, Philip G.;
Levin, Henry L.

Publication type:

Article

Transition-state destabilization reveals how human DNA polymerase β proceeds across the chemically unstable lesion N7-methylguanine.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8755, doi. 10.1093/nar/gku554

By:

Koag, Myong-Chul;
Kou, Yi;
Ouzon-Shubeita, Hala;
Lee, Seongmin

Publication type:

Article

Free mRNA in excess upon polysome dissociation is a scaffold for protein multimerization to form stress granules.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8678, doi. 10.1093/nar/gku582

By:

Bounedjah, Ouissame;
Desforges, Bénédicte;
Wu, Ting-Di;
Pioche-Durieu, Catherine;
Marco, Sergio;
Hamon, Loic;
Curmi, Patrick A.;
Guerquin-Kern, Jean-Luc;
Piétrement, Olivier;
Pastré, David

Publication type:

Article

RAMICS: trainable, high-speed and biologically relevant alignment of high-throughput sequencing reads to coding DNA.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. e106, doi. 10.1093/nar/gku473

By:

Wright, Imogen A.;
Travers, Simon A.

Publication type:

Article

Identification of RNA binding motifs in the R2 retrotransposon-encoded reverse transcriptase.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8405, doi. 10.1093/nar/gku514

By:

Jamburuthugoda, Varuni K.;
Eickbush, Thomas H.

Publication type:

Article

SUMOylation modulates the transcriptional activity of androgen receptor in a target gene and pathway selective manner.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8310, doi. 10.1093/nar/gku543

By:

Sutinen, Päivi;
Malinen, Marjo;
Heikkinen, Sami;
Palvimo, Jorma J.

Publication type:

Article

Reverse gyrase—recent advances and current mechanistic understanding of positive DNA supercoiling.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8200, doi. 10.1093/nar/gku589

By:

Lulchev, Pavel;
Klostermeier, Dagmar

Publication type:

Article

Remarkable acceleration of a DNA/RNA inter-strand functionality transfer reaction to modify a cytosine residue: the proximity effect via complexation with a metal cation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8808, doi. 10.1093/nar/gku538

By:

Jitsuzaki, Daichi;
Onizuka, Kazumitsu;
Nishimoto, Atsushi;
Oshiro, Ikuya;
Taniguchi, Yosuke;
Sasaki, Shigeki

Publication type:

Article

Structural basis of the methylation specificity of R.DpnI.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8745, doi. 10.1093/nar/gku546

By:

Mierzejewska, Karolina;
Siwek, Wojciech;
Czapinska, Honorata;
Kaus-Drobek, Magdalena;
Radlinska, Monika;
Skowronek, Krzysztof;
Bujnicki, Janusz M.;
Dadlez, Michal;
Bochtler, Matthias

Publication type:

Article

Targeted delivery of antisense oligonucleotides to hepatocytes using triantennary N-acetyl galactosamine improves potency 10-fold in mice.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8796, doi. 10.1093/nar/gku531

By:

Prakash, Thazha P.;
Graham, Mark J.;
Yu, Jinghua;
Carty, Rick;
Low, Audrey;
Chappell, Alfred;
Schmidt, Karsten;
Zhao, Chenguang;
Aghajan, Mariam;
Murray, Heather F.;
Riney, Stan;
Booten, Sheri L.;
Murray, Susan F.;
Gaus, Hans;
Crosby, Jeff;
Lima, Walt F.;
Guo, Shuling;
Monia, Brett P.;
Swayze, Eric E.;
Seth, Punit P.

Publication type:

Article

Repetitive RNA unwinding by RNA helicase A facilitates RNA annealing.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8556, doi. 10.1093/nar/gku523

By:

Koh, Hye Ran;
Xing, Li;
Kleiman, Lawrence;
Myong, Sua

Publication type:

Article