Works matching IS 03051048 AND DT 2014 AND VI 42 AND IP 12

Results: 60

TCP1 complex proteins interact with phosphorothioate oligonucleotides and can co-localize in oligonucleotide-induced nuclear bodies in mammalian cells.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7819, doi. 10.1093/nar/gku484

By:

Liang, Xue-hai;
Shen, Wen;
Sun, Hong;
Prakash, Thazha P.;
Crooke, Stanley T.

Publication type:

Article

Importance of the RNA secondary structure for the relative accumulation of clustered viral microRNAs.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7981, doi. 10.1093/nar/gku424

By:

Contrant, Maud;
Fender, Aurélie;
Chane-Woon-Ming, Béatrice;
Randrianjafy, Ramy;
Vivet-Boudou, Valérie;
Richer, Delphine;
Pfeffer, Sébastien

Publication type:

Article

Jumonji domain containing protein 6 (Jmjd6) modulates splicing and specifically interacts with arginine–serine-rich (RS) domains of SR- and SR-like proteins.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7833, doi. 10.1093/nar/gku488

By:

Heim, Astrid;
Grimm, Christina;
Müller, Udo;
Häußler, Simon;
Mackeen, Mukram M.;
Merl, Juliane;
Hauck, Stefanie M.;
Kessler, Benedikt M.;
Schofield, Christopher J.;
Wolf, Alexander;
Böttger, Angelika

Publication type:

Article

A highly processive topoisomerase I: studies at the single-molecule level.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7935, doi. 10.1093/nar/gku494

By:

Szafran, Marcin Jan;
Strick, Terence;
Strzałka, Agnieszka;
Zakrzewska-Czerwińska, Jolanta;
Jakimowicz, Dagmara

Publication type:

Article

Genomic and proteomic analysis of transcription factor TFII-I reveals insight into the response to cellular stress.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7625, doi. 10.1093/nar/gku467

By:

Fan, Alex Xiucheng;
Papadopoulos, Giorgio L.;
Hossain, Mir A.;
Lin, I.-Ju;
Hu, Jianhong;
Tang, Tommy Ming;
Kilberg, Michael S.;
Renne, Rolf;
Strouboulis, John;
Bungert, Jörg

Publication type:

Article

Engineering an Acinetobacter regulon for biosensing and high-throughput enzyme screening in E. coli via flow cytometry.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 8150, doi. 10.1093/nar/gku444

By:

Jha, Ramesh K.;
Kern, Theresa L.;
Fox, David T.;
M. Strauss, Charlie E.

Publication type:

Article

Realistic artificial DNA sequences as negative controls for computational genomics.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. e99, doi. 10.1093/nar/gku356

By:

Caballero, Juan;
Smit, Arian F. A.;
Hood, Leroy;
Glusman, Gustavo

Publication type:

Article

Human AP endonuclease inefficiently removes abasic sites within G4 structures compared to duplex DNA.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7708, doi. 10.1093/nar/gku417

By:

Broxson, Christopher;
Hayner, Jaclyn N.;
Beckett, Joshua;
Bloom, Linda B.;
Tornaletti, Silvia

Publication type:

Article

Error removal in microchip-synthesized DNA using immobilized MutS.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. e102, doi. 10.1093/nar/gku405

By:

Wan, Wen;
LI, Lulu;
Xu, Qianqian;
Wang, Zhefan;
Yao, Yuan;
Wang, Rongliang;
Zhang, Jia;
Liu, Haiyan;
Gao, Xiaolian;
Hong, Jiong

Publication type:

Article

Detection and characterization of spacer integration intermediates in type I-E CRISPR–Cas system.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7884, doi. 10.1093/nar/gku510

By:

Arslan, Zihni;
Hermanns, Veronica;
Wurm, Reinhild;
Wagner, Rolf;
Pul, Ümit

Publication type:

Article

Brd4 activates P-TEFb for RNA polymerase II CTD phosphorylation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7577, doi. 10.1093/nar/gku449

By:

Itzen, Friederike;
Greifenberg, Ann Katrin;
Bösken, Christian A.;
Geyer, Matthias

Publication type:

Article

Structure and semi-sequence-specific RNA binding of Nrd1.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 8024, doi. 10.1093/nar/gku446

By:

Bacikova, Veronika;
Pasulka, Josef;
Kubicek, Karel;
Stefl, Richard

Publication type:

Article

The combination of transcriptomics and informatics identifies pathways targeted by miR-204 during neurogenesis and axon guidance.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7793, doi. 10.1093/nar/gku498

By:

Conte, Ivan;
Merella, Stefania;
Garcia-Manteiga, Jose Manuel;
Migliore, Chiara;
Lazarevic, Dejan;
Carrella, Sabrina;
Marco-Ferreres, Raquel;
Avellino, Raffaella;
Davidson, Nathan Paul;
Emmett, Warren;
Sanges, Remo;
Bockett, Nicholas;
Van Heel, David;
Meroni, Germana;
Bovolenta, Paola;
Stupka, Elia;
Banfi, Sandro

Publication type:

Article

Nucleic Acids Research: Editorial Board.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 12, p. ii, doi. 10.1093/nar/gku026
Publication type:: Article

Force-induced melting of DNA—evidence for peeling and internal melting from force spectra on short synthetic duplex sequences.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 8083, doi. 10.1093/nar/gku441

By:

Bosaeus, Niklas;
El-Sagheer, Afaf H.;
Brown, Tom;
Åkerman, Björn;
Nordén, Bengt

Publication type:

Article

PARG is dispensable for recovery from transient replicative stress but required to prevent detrimental accumulation of poly(ADP-ribose) upon prolonged replicative stress.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7776, doi. 10.1093/nar/gku505

By:

Illuzzi, Giuditta;
Fouquerel, Elise;
Amé, Jean-Christophe;
Noll, Aurélia;
Rehmet, Kristina;
Nasheuer, Heinz-Peter;
Dantzer, Françoise;
Schreiber, Valérie

Publication type:

Article

The protein kinase TOUSLED facilitates RNAi in Arabidopsis.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7971, doi. 10.1093/nar/gku422

By:

Uddin, Mohammad Nazim;
Dunoyer, Patrice;
Schott, Gregory;
Akhter, Salina;
Shi, Chunlin;
Lucas, William J.;
Voinnet, Olivier;
Kim, Jae-Yean

Publication type:

Article

Structures of HIV-1 RT-RNA/DNA ternary complexes with dATP and nevirapine reveal conformational flexibility of RNA/DNA: insights into requirements for RNase H cleavage.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 8125, doi. 10.1093/nar/gku487

By:

Das, Kalyan;
Martinez, Sergio E.;
Bandwar, Rajiv P.;
Arnold, Eddy

Publication type:

Article

Lessons from miR-143/145: the importance of cell-type localization of miRNAs.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7528, doi. 10.1093/nar/gku461

By:

Kent, Oliver A.;
McCall, Matthew N.;
Cornish, Toby C.;
Halushka, Marc K.

Publication type:

Article

An RNF168 fragment defective for focal accumulation at DNA damage is proficient for inhibition of homologous recombination in BRCA1 deficient cells.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7720, doi. 10.1093/nar/gku421

By:

Muñoz, Meilen C.;
Yanez, Diana A.;
Stark, Jeremy M.

Publication type:

Article

siPools: highly complex but accurately defined siRNA pools eliminate off-target effects.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 8049, doi. 10.1093/nar/gku480

By:

Hannus, Michael;
Beitzinger, Michaela;
Engelmann, Julia C.;
Weickert, Marie-Theresa;
Spang, Rainer;
Hannus, Stefan;
Meister, Gunter

Publication type:

Article

eIF4B, eIF4G and RNA regulate eIF4A activity in translation initiation by modulating the eIF4A conformational cycle.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7911, doi. 10.1093/nar/gku440

By:

Harms, Ulf;
Andreou, Alexandra Zoi;
Gubaev, Airat;
Klostermeier, Dagmar

Publication type:

Article

A deafness-associated tRNAHis mutation alters the mitochondrial function, ROS production and membrane potential.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 8039, doi. 10.1093/nar/gku466

By:

Gong, Shasha;
Peng, Yanyan;
Jiang, Pingping;
Wang, Meng;
Fan, Mingjie;
Wang, Xinjian;
Zhou, Hong;
Li, Huawei;
Yan, Qingfeng;
Huang, Taosheng;
Guan, Min-Xin

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 12, p. i, doi. 10.1093/nar/gku015
Publication type:: Article

Performance comparison of SNP detection tools with illumina exome sequencing data—an assessment using both family pedigree information and sample-matched SNP array data.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. e101, doi. 10.1093/nar/gku392

By:

Yi, Ming;
Zhao, Yongmei;
Jia, Li;
He, Mei;
Kebebew, Electron;
Stephens, Robert M.

Publication type:

Article

Cell cycle-dependent regulation of the RNA-binding protein Staufen1.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7867, doi. 10.1093/nar/gku506

By:

Boulay, Karine;
Ghram, Mehdi;
Viranaicken, Wildriss;
Trépanier, Véronique;
Mollet, Stéphanie;
Fréchina, Céline;
DesGroseillers, Luc

Publication type:

Article

TtcA a new tRNA-thioltransferase with an Fe-S cluster.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7960, doi. 10.1093/nar/gku508

By:

Bouvier, Denis;
Labessan, Natty;
Clémancey, Martin;
Latour, Jean-Marc;
Ravanat, Jean-Luc;
Fontecave, Marc;
Atta, Mohamed

Publication type:

Article

CANOES: detecting rare copy number variants from whole exome sequencing data.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. e97, doi. 10.1093/nar/gku345

By:

Backenroth, Daniel;
Homsy, Jason;
Murillo, Laura R.;
Glessner, Joe;
Lin, Edwin;
Brueckner, Martina;
Lifton, Richard;
Goldmuntz, Elizabeth;
Chung, Wendy K.;
Shen, Yufeng

Publication type:

Article

Regulation of L1 expression and retrotransposition by melatonin and its receptor: implications for cancer risk associated with light exposure at night.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7694, doi. 10.1093/nar/gku503

By:

deHaro, Dawn;
Kines, Kristine J.;
Sokolowski, Mark;
Dauchy, Robert T.;
Streva, Vincent A.;
Hill, Steven M.;
Hanifin, John P.;
Brainard, George C.;
Blask, David E.;
Belancio, Victoria P.

Publication type:

Article

Strand exchange of telomeric DNA catalyzed by the Werner syndrome protein (WRN) is specifically stimulated by TRF2.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7748, doi. 10.1093/nar/gku454

By:

Edwards, Deanna N.;
Orren, David K.;
Machwe, Amrita

Publication type:

Article

The conformational state of the nucleosome entry–exit site modulates TATA box-specific TBP binding.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7561, doi. 10.1093/nar/gku423

By:

Hieb, Aaron R.;
Gansen, Alexander;
Böhm, Vera;
Langowski, Jörg

Publication type:

Article

SPIB and BATF provide alternate determinants of IRF4 occupancy in diffuse large B-cell lymphoma linked to disease heterogeneity.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7591, doi. 10.1093/nar/gku451

By:

Care, Matthew A.;
Cocco, Mario;
Laye, Jon P.;
Barnes, Nicholas;
Huang, Yuanxue;
Wang, Ming;
Barrans, Sharon;
Du, Ming;
Jack, Andrew;
Westhead, David R.;
Doody, Gina M.;
Tooze, Reuben M.

Publication type:

Article

GtrS and GltR form a two-component system: the central role of 2-ketogluconate in the expression of exotoxin A and glucose catabolic enzymes in Pseudomonas aeruginosa.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7654, doi. 10.1093/nar/gku496

By:

Daddaoua, Abdelali;
Molina-Santiago, Carlos;
la Torre, Jesús de;
Krell, Tino;
Ramos, Juan-Luis

Publication type:

Article

Critical role for p53-serine 15 phosphorylation in stimulating transactivation at p53-responsive promoters.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7666, doi. 10.1093/nar/gku501

By:

Loughery, Jayne;
Cox, Miranda;
Smith, Linda M.;
Meek, David W.

Publication type:

Article

Analyzing ion distributions around DNA.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 8138, doi. 10.1093/nar/gku504

By:

Lavery, Richard;
Maddocks, John H.;
Pasi, Marco;
Zakrzewska, Krystyna

Publication type:

Article

Silencing of IFN-stimulated gene transcription is regulated by histone H1 and its chaperone TAF-I.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7642, doi. 10.1093/nar/gku485

By:

Kadota, Shinichi;
Nagata, Kyosuke

Publication type:

Article

Validation of a fluorescence-based screening concept to identify ribosome assembly defects in Escherichia coli.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. e100, doi. 10.1093/nar/gku381

By:

Nikolay, Rainer;
Schloemer, Renate;
Schmidt, Sabine;
Mueller, Silke;
Heubach, Anja;
Deuerling, Elke

Publication type:

Article

Sequence-specific interactions of Rep proteins with ssDNA in the AT-rich region of the plasmid replication origin.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7807, doi. 10.1093/nar/gku453

By:

Wegrzyn, Katarzyna;
Fuentes-Perez, Maria Eugenia;
Bury, Katarzyna;
Rajewska, Magdalena;
Moreno-Herrero, Fernando;
Konieczny, Igor

Publication type:

Article

Structure of 5-hydroxymethylcytosine-specific restriction enzyme, AbaSI, in complex with DNA.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7947, doi. 10.1093/nar/gku497

By:

Horton, John R.;
Borgaro, Janine G.;
Griggs, Rose M.;
Quimby, Aine;
Guan, Shengxi;
Zhang, Xing;
Wilson, Geoffrey G.;
Zheng, Yu;
Zhu, Zhenyu;
Cheng, Xiaodong

Publication type:

Article

A SET-domain-independent role of WRAD complex in cell-cycle regulatory function of mixed lineage leukemia.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7611, doi. 10.1093/nar/gku458

By:

Ali, Aamir;
Veeranki, Sailaja Naga;
Tyagi, Shweta

Publication type:

Article

Remodeling of U2-U6 snRNA helix I during pre-mRNA splicing by Prp16 and the NineTeen Complex protein Cwc2.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 8008, doi. 10.1093/nar/gku431

By:

Hogg, Rebecca;
de Almeida, Rogerio Alves;
Ruckshanthi, Jayalath P.D.;
O'Keefe, Raymond T.

Publication type:

Article

Optimal antisense target reducing INS intron 1 retention is adjacent to a parallel G quadruplex.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 8161, doi. 10.1093/nar/gku507

By:

Kralovicova, Jana;
Lages, Ana;
Patel, Alpa;
Dhir, Ashish;
Buratti, Emanuele;
Searle, Mark;
Vorechovsky, Igor

Publication type:

Article

Theoretical and experimental assessment of degenerate primer tagging in ultra-deep applications of next-generation sequencing.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. e98, doi. 10.1093/nar/gku355

By:

Liang, Richard H.;
Mo, Theresa;
Dong, Winnie;
Lee, Guinevere Q.;
Swenson, Luke C.;
McCloskey, Rosemary M.;
Woods, Conan K.;
Brumme, Chanson J.;
Ho, Cynthia K.Y.;
Schinkel, Janke;
Joy, Jeffrey B.;
Harrigan, P. Richard;
Poon, Art F.Y.

Publication type:

Article

Structure of the N-glycosidase MilB in complex with hydroxymethyl CMP reveals its Arg23 specifically recognizes the substrate and controls its entry.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 8115, doi. 10.1093/nar/gku486

By:

Zhao, Gong;
Wu, Geng;
Zhang, Yan;
Liu, Guang;
Han, Tiesheng;
Deng, Zixin;
He, Xinyi

Publication type:

Article

Dynamic condensation of linker histone C-terminal domain regulates chromatin structure.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7553, doi. 10.1093/nar/gku491

By:

Luque, Antoni;
Collepardo-Guevara, Rosana;
Grigoryev, Sergei;
Schlick, Tamar

Publication type:

Article

The flavoprotein Mcap0476 (RlmFO) catalyzes m5U1939 modification in Mycoplasma capricolum 23S rRNA.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 8073, doi. 10.1093/nar/gku518

By:

Lartigue, Carole;
Lebaudy, Anne;
Blanchard, Alain;
Yacoubi, Basma El;
Rose, Simon;
Grosjean, Henri;
Douthwaite, Stephen

Publication type:

Article

Type II restriction endonucleases—a historical perspective and more.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7489, doi. 10.1093/nar/gku447

By:

Pingoud, Alfred;
Wilson, Geoffrey G.;
Wende, Wolfgang

Publication type:

Article

Divergent LIN28-mRNA associations result in translational suppression upon the initiation of differentiation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7997, doi. 10.1093/nar/gku430

By:

Tan, Shen Mynn;
Altschuler, Gabriel;
Zhao, Tian Yun;
Ang, Haw Siang;
Yang, Henry;
Lim, Bing;
Vardy, Leah;
Hide, Winston;
Thomson, Andrew M.;
Lareu, Ricky R.

Publication type:

Article

Hyperactive Cdc2 kinase interferes with the response to broken replication forks by trapping S.pombe Crb2 in its mitotic T215 phosphorylated state.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7734, doi. 10.1093/nar/gku452

By:

Mahyous Saeyd, Salah Adam;
Ewert-Krzemieniewska, Katarzyna;
Liu, Boyin;
Caspari, Thomas

Publication type:

Article

Unique subunit packing in mycobacterial nanoRNase leads to alternate substrate recognitions in DHH phosphodiesterases.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 7894, doi. 10.1093/nar/gku425

By:

Srivastav, Rajpal;
Kumar, Dilip;
Grover, Amit;
Singh, Ajit;
Manjasetty, Babu A.;
Sharma, Rakesh;
Taneja, Bhupesh

Publication type:

Article