Works matching IS 03051048 AND DT 2013 AND VI 41 AND IP 3

Results: 66

Categorical spectral analysis of periodicity in human and viral genomes.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1395, doi. 10.1093/nar/gks1261

By:

Howe, Elizabeth D.;
Song, Jun S.

Publication type:

Article

Crucial role of the C-terminal domain of Mycobacterium tuberculosis leucyl-tRNA synthetase in aminoacylation and editing.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1859, doi. 10.1093/nar/gks1307

By:

Hu, Qing-Hua;
Huang, Qian;
Wang, En-Duo

Publication type:

Article

Transcription blockage by homopurine DNA sequences: role of sequence composition and single-strand breaks.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1817, doi. 10.1093/nar/gks1333

By:

Belotserkovskii, Boris P.;
Neil, Alexander J.;
Saleh, Syed Shayon;
Shin, Jane Hae Soo;
Mirkin, Sergei M.;
Hanawalt, Philip C.

Publication type:

Article

HIV-1 frameshift efficiency is primarily determined by the stability of base pairs positioned at the mRNA entrance channel of the ribosome.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1901, doi. 10.1093/nar/gks1254

By:

Mouzakis, Kathryn D.;
Lang, Andrew L.;
Vander Meulen, Kirk A.;
Easterday, Preston D.;
Butcher, Samuel E.

Publication type:

Article

USP7S-dependent inactivation of Mule regulates DNA damage signalling and repair.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1750, doi. 10.1093/nar/gks1359

By:

Khoronenkova, Svetlana V.;
Dianov, Grigory L.

Publication type:

Article

DNA polymerase minor groove interactions modulate mutagenic bypass of a templating 8-oxoguanine lesion.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1848, doi. 10.1093/nar/gks1276

By:

Freudenthal, Bret D.;
Beard, William A.;
Wilson, Samuel H.

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 3, p. iii, doi. 10.1093/nar/gks1429
Publication type:: Article

Bacteriophage SPP1 DNA replication strategies promote viral and disable host replication in vitro.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1711, doi. 10.1093/nar/gks1290

By:

Seco, Elena M.;
Zinder, John C.;
Manhart, Carol M.;
Lo Piano, Ambra;
McHenry, Charles S.;
Ayora, Silvia

Publication type:

Article

Magnetic tweezers measurements of the nanomechanical stability of DNA against denaturation at various conditions of pH and ionic strength.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 2009, doi. 10.1093/nar/gks1206

By:

Tempestini, Alessia;
Cassina, Valeria;
Brogioli, Doriano;
Ziano, Roberto;
Erba, Simona;
Giovannoni, Roberto;
Cerrito, Maria G.;
Salerno, Domenico;
Mantegazza, Francesco

Publication type:

Article

The expression platform and the aptamer: cooperativity between Mg2+ and ligand in the SAM-I riboswitch.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1922, doi. 10.1093/nar/gks978

By:

Hennelly, Scott P.;
Novikova, Irina V.;
Sanbonmatsu, Karissa Y.

Publication type:

Article

Selective association between nucleosomes with identical DNA sequences.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1544, doi. 10.1093/nar/gks1269

By:

Nishikawa, Jun-ichi;
Ohyama, Takashi

Publication type:

Article

The comprehensive epigenome map of piRNA clusters.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1581, doi. 10.1093/nar/gks1275

By:

Kawaoka, Shinpei;
Hara, Kahori;
Shoji, Keisuke;
Kobayashi, Maki;
Shimada, Toru;
Sugano, Sumio;
Tomari, Yukihide;
Suzuki, Yutaka;
Katsuma, Susumu

Publication type:

Article

Development and application of a DNA microarray-based yeast two-hybrid system.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1496, doi. 10.1093/nar/gks1329

By:

Suter, Bernhard;
Fontaine, Jean-Fred;
Yildirimman, Reha;
Raskó, Tamás;
Schaefer, Martin H.;
Rasche, Axel;
Porras, Pablo;
Vázquez-Álvarez, Blanca M.;
Russ, Jenny;
Rau, Kirstin;
Foulle, Raphaele;
Zenkner, Martina;
Saar, Kathrin;
Herwig, Ralf;
Andrade-Navarro, Miguel A.;
Wanker, Erich E.

Publication type:

Article

A cis-element with mixed G-quadruplex structure of NPGPx promoter is essential for nucleolin-mediated transactivation on non-targeting siRNA stress.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1533, doi. 10.1093/nar/gks1232

By:

Wei, Pei-Chi;
Wang, Zi-Fu;
Lo, Wen-Ting;
Su, Mei-I;
Shew, Jin-Yuh;
Chang, Ta-Chau;
Lee, Wen-Hwa

Publication type:

Article

Elucidating combinatorial histone modifications and crosstalks by coupling histone-modifying enzyme with biotin ligase activity.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. e49, doi. 10.1093/nar/gks1247

By:

Lau, Priscilla Nga Ieng;
Cheung, Peter

Publication type:

Article

Systematic screens of proteins binding to synthetic microRNA precursors.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. e47, doi. 10.1093/nar/gks1197

By:

Towbin, Harry;
Wenter, Philipp;
Guennewig, Boris;
Imig, Jochen;
Zagalak, Julian A.;
Gerber, André P.;
Hall, Jonathan

Publication type:

Article

Differential strand separation at critical temperature: A minimally disruptive enrichment method for low-abundance unknown DNA mutations.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. e50, doi. 10.1093/nar/gks1250

By:

Guha, Minakshi;
Castellanos-Rizaldos, Elena;
Liu, Pingfang;
Mamon, Harvey;
Makrigiorgos, G. Mike

Publication type:

Article

Trinucleotide repeat deletion via a unique hairpin bypass by DNA polymerase β and alternate flap cleavage by flap endonuclease 1.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1684, doi. 10.1093/nar/gks1306

By:

Xu, Meng;
Gabison, Jonathan;
Liu, Yuan

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 3, p. ii, doi. 10.1093/nar/gks1405
Publication type:: Article

Candidate RNA structures for domain 3 of the foot-and-mouth-disease virus internal ribosome entry site.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1483, doi. 10.1093/nar/gks1302

By:

Jung, Segun;
Schlick, Tamar

Publication type:

Article

Genes involved in host–parasite interactions can be revealed by their correlated expression.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1508, doi. 10.1093/nar/gks1340

By:

Reid, Adam James;
Berriman, Matthew

Publication type:

Article

Deregulation of poly(A) polymerase I in Escherichia coli inhibits protein synthesis and leads to cell death.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1757, doi. 10.1093/nar/gks1280

By:

Mohanty, Bijoy K.;
Kushner, Sidney R.

Publication type:

Article

Volatility in mRNA secondary structure as a design principle for antisense.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. e43, doi. 10.1093/nar/gks902

By:

Johnson, Erik;
Srivastava, Ranjan

Publication type:

Article

Yeast polypeptide exit tunnel ribosomal proteins L17, L35 and L37 are necessary to recruit late-assembling factors required for 27SB pre-rRNA processing.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1965, doi. 10.1093/nar/gks1272

By:

Gamalinda, Michael;
Jakovljevic, Jelena;
Babiano, Reyes;
Talkish, Jason;
de la Cruz, Jesús;
Woolford, John L.

Publication type:

Article

Suppression of artifacts and barcode bias in high-throughput transcriptome analyses utilizing template switching.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. e44, doi. 10.1093/nar/gks1128

By:

Tang, Dave T. P.;
Plessy, Charles;
Salimullah, Md;
Suzuki, Ana Maria;
Calligaris, Raffaella;
Gustincich, Stefano;
Carninci, Piero

Publication type:

Article

Sequential activation of genetic programs in mouse mammary epithelium during pregnancy depends on STAT5A/B concentration.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1622, doi. 10.1093/nar/gks1310

By:

Yamaji, Daisuke;
Kang, Keunsoo;
Robinson, Gertraud W.;
Hennighausen, Lothar

Publication type:

Article

CHFR is important for the first wave of ubiquitination at DNA damage sites.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1698, doi. 10.1093/nar/gks1278

By:

Liu, Chao;
Wu, Jiaxue;
Paudyal, Sharad C.;
You, Zhongsheng;
Yu, Xiaochun

Publication type:

Article

In vitro biosynthesis of a universal t6A tRNA modification in Archaea and Eukarya.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1953, doi. 10.1093/nar/gks1287

By:

Perrochia, Ludovic;
Crozat, Estelle;
Hecker, Arnaud;
Zhang, Wenhua;
Bareille, Joseph;
Collinet, Bruno;
van Tilbeurgh, Herman;
Forterre, Patrick;
Basta, Tamara

Publication type:

Article

Improved nucleic acid descriptors for siRNA efficacy prediction.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1383, doi. 10.1093/nar/gks1191

By:

Sciabola, Simone;
Cao, Qing;
Orozco, Modesto;
Faustino, Ignacio;
Stanton, Robert V.

Publication type:

Article

TEAK: Topology Enrichment Analysis frameworK for detecting activated biological subpathways.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1425, doi. 10.1093/nar/gks1299

By:

Judeh, Thair;
Johnson, Cole;
Kumar, Anuj;
Zhu, Dongxiao

Publication type:

Article

Competing roles of DNA end resection and non-homologous end joining functions in the repair of replication-born double-strand breaks by sister-chromatid recombination.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1669

By:

Muñoz-Galván, Sandra;
López-Saavedra, Ana;
Jackson, Stephen P.;
Huertas, Pablo;
Cortés-Ledesma, Felipe;
Aguilera, Andrés

Publication type:

Article

STA1, an Arabidopsis pre-mRNA processing factor 6 homolog, is a new player involved in miRNA biogenesis.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1984, doi. 10.1093/nar/gks1309

By:

Ben Chaabane, Samir;
Liu, Renyi;
Chinnusamy, Viswanathan;
Kwon, Yerim;
Park, Joo-hyuk;
Kim, Seo Yeon;
Zhu, Jian-Kang;
Yang, Seong Wook;
Lee, Byeong-ha

Publication type:

Article

PreCisIon: PREdiction of CIS-regulatory elements improved by gene’s positION.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1406, doi. 10.1093/nar/gks1286

By:

Elati, Mohamed;
Nicolle, Rémy;
Junier, Ivan;
Fernández, David;
Fekih, Rim;
Font, Julio;
Képès, François

Publication type:

Article

Replication of a carcinogenic nitropyrene DNA lesion by human Y-family DNA polymerase.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 2060, doi. 10.1093/nar/gks1296

By:

Kirouac, Kevin N.;
Basu, Ashis K.;
Ling, Hong

Publication type:

Article

Vaccinia and influenza A viruses select rather than adjust tRNAs to optimize translation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1914, doi. 10.1093/nar/gks986

By:

Pavon-Eternod, Mariana;
David, Alexandre;
Dittmar, Kimberly;
Berglund, Peter;
Pan, Tao;
Bennink, Jack R.;
Yewdell, Jonathan W.

Publication type:

Article

Quantification of stochastic noise of splicing and polyadenylation in Entamoeba histolytica.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1936, doi. 10.1093/nar/gks1271

By:

Hon, Chung-Chau;
Weber, Christian;
Sismeiro, Odile;
Proux, Caroline;
Koutero, Mikael;
Deloger, Marc;
Das, Sarbashis;
Agrahari, Mridula;
Dillies, Marie-Agnes;
Jagla, Bernd;
Coppee, Jean-Yves;
Bhattacharya, Alok;
Guillen, Nancy

Publication type:

Article

Highly similar structural frames link the template tunnel and NTP entry tunnel to the exterior surface in RNA-dependent RNA polymerases.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1464, doi. 10.1093/nar/gks1251

By:

Lang, Dorothy M.;
Zemla, A. T.;
Zhou, C. L. Ecale

Publication type:

Article

CTD serine-2 plays a critical role in splicing and termination factor recruitment to RNA polymerase II in vivo.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1591, doi. 10.1093/nar/gks1327

By:

Gu, Bo;
Eick, Dirk;
Bensaude, Olivier

Publication type:

Article

miRNA target enrichment analysis reveals directly active miRNAs in health and disease.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. e45, doi. 10.1093/nar/gks1142

By:

Steinfeld, Israel;
Navon, Roy;
Ach, Robert;
Yakhini, Zohar

Publication type:

Article

Regulation of error-prone translesion synthesis by Spartan/C1orf124.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1661, doi. 10.1093/nar/gks1267

By:

Kim, Myoung Shin;
Machida, Yuka;
Vashisht, Ajay A.;
Wohlschlegel, James A.;
Pang, Yuan-Ping;
Machida, Yuichi J.

Publication type:

Article

The twilight zone of cis element alignments.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1438, doi. 10.1093/nar/gks1301

By:

Sebastian, Alvaro;
Contreras-Moreira, Bruno

Publication type:

Article

Novel function of the unique N-terminal region of RUNX1c in B cell growth regulation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1555, doi. 10.1093/nar/gks1273

By:

Brady, Gareth;
Elgueta Karstegl, Claudio;
Farrell, Paul J.

Publication type:

Article

McGenus: a Monte Carlo algorithm to predict RNA secondary structures with pseudoknots.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1895, doi. 10.1093/nar/gks1204

By:

Bon, Michaël;
Micheletti, Cristian;
Orland, Henri

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 3, p. i, doi. 10.1093/nar/gks1366
Publication type:: Article

Transcription factor and chromatin features predict genes associated with eQTLs.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1450, doi. 10.1093/nar/gks1339

By:

Wang, Dennis;
Rendon, Augusto;
Wernisch, Lorenz

Publication type:

Article

Effect of capsid confinement on the chromatin organization of the SV40 minichromosome.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1569, doi. 10.1093/nar/gks1270

By:

Saper, Gadiel;
Kler, Stanislav;
Asor, Roi;
Oppenheim, Ariella;
Raviv, Uri;
Harries, Daniel

Publication type:

Article

Decoupling nucleosome recognition from DNA binding dramatically alters the properties of the Chd1 chromatin remodeler.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1637, doi. 10.1093/nar/gks1440

By:

Patel, Ashok;
Chakravarthy, Srinivas;
Morrone, Seamus;
Nodelman, Ilana M.;
McKnight, Jeffrey N.;
Bowman, Gregory D.

Publication type:

Article

2,3,7,8-Tetrachlorodibenzo-p-dioxin poly(ADP-ribose) polymerase (TiPARP, ARTD14) is a mono-ADP-ribosyltransferase and repressor of aryl hydrocarbon receptor transactivation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1604, doi. 10.1093/nar/gks1337

By:

MacPherson, Laura;
Tamblyn, Laura;
Rajendra, Sharanya;
Bralha, Fernando;
McPherson, J. Peter;
Matthews, Jason

Publication type:

Article

p38 MAPK- and Akt-mediated p300 phosphorylation regulates its degradation to facilitate nucleotide excision repair.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1722, doi. 10.1093/nar/gks1312

By:

Wang, Qi-En;
Han, Chunhua;
Zhao, Ran;
Wani, Gulzar;
Zhu, Qianzheng;
Gong, Li;
Battu, Aruna;
Racoma, Ira;
Sharma, Nidhi;
Wani, Altaf A.

Publication type:

Article

Absence of a universal element for tRNAHis identity in Acanthamoeba castellanii.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1885, doi. 10.1093/nar/gks1242

By:

Rao, Bhalchandra S.;
Mohammad, Fuad;
Gray, Michael W.;
Jackman, Jane E.

Publication type:

Article