Works matching IS 03051048 AND DT 2013 AND VI 41 AND IP 22

Results: 64

Pre-activation of the genome integrity checkpoint increases DNA damage tolerance.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10371, doi. 10.1093/nar/gkt820

By:

Tsaponina, Olga;
Chabes, Andrei

Publication type:

Article

Engineering modular ‘ON’ RNA switches using biological components.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10449, doi. 10.1093/nar/gkt787

By:

Ceres, Pablo;
Trausch, Jeremiah J.;
Batey, Robert T.

Publication type:

Article

Co-regulated gene expression by oestrogen receptor α and liver receptor homolog-1 is a feature of the oestrogen response in breast cancer cells.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10228, doi. 10.1093/nar/gkt827

By:

Lai, Chun-Fui;
Flach, Koen D.;
Alexi, Xanthippi;
Fox, Stephen P.;
Ottaviani, Silvia;
Thiruchelvam, Paul T.R.;
Kyle, Fiona J.;
Thomas, Ross S.;
Launchbury, Rosalind;
Hua, Hui;
Callaghan, Holly B.;
Carroll, Jason S.;
Charles Coombes, R.;
Zwart, Wilbert;
Buluwela, Laki;
Ali, Simak

Publication type:

Article

Co-operation of BRCA1 and POH1 relieves the barriers posed by 53BP1 and RAP80 to resection.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10298, doi. 10.1093/nar/gkt802

By:

Kakarougkas, Andreas;
Ismail, Amani;
Katsuki, Yoko;
Freire, Raimundo;
Shibata, Atsushi;
Jeggo, Penny A.

Publication type:

Article

Comparative analysis of affinity-based 5-hydroxymethylation enrichment techniques.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. e206, doi. 10.1093/nar/gkt1080

By:

Thomson, John P.;
Hunter, Jennifer M.;
Nestor, Colm E.;
Dunican, Donncha S.;
Terranova, Rémi;
Moggs, Jonathan G.;
Meehan, Richard R.

Publication type:

Article

Positive and negative selection using the tetA-sacB cassette: recombineering and P1 transduction in Escherichia coli.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. e204, doi. 10.1093/nar/gkt1075

By:

Li, Xin-tian;
Thomason, Lynn C.;
Sawitzke, James A.;
Costantino, Nina;
Court, Donald L.

Publication type:

Article

In vitro optimization of 2′-OMe-4′-thioribonucleoside–modified anti-microRNA oligonucleotides and its targeting delivery to mouse liver using a liposomal nanoparticle.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10659, doi. 10.1093/nar/gkt823

By:

Takahashi, Mayumi;
Yamada, Naoki;
Hatakeyama, Hiroto;
Murata, Manami;
Sato, Yusuke;
Minakawa, Noriaki;
Harashima, Hideyoshi;
Matsuda, Akira

Publication type:

Article

Automated identification of RNA 3D modules with discriminative power in RNA structural alignments.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 9999, doi. 10.1093/nar/gkt795

By:

Theis, Corinna;
Höner zu Siederdissen, Christian;
Hofacker, Ivo L.;
Gorodkin, Jan

Publication type:

Article

Structural insights into VirB-DNA complexes reveal mechanism of transcriptional activation of virulence genes.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10529, doi. 10.1093/nar/gkt748

By:

Gao, Xiaopan;
Zou, Tingting;
Mu, Zhixia;
Qin, Bo;
Yang, Jian;
Waltersperger, Sandro;
Wang, Meitian;
Cui, Sheng;
Jin, Qi

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 22, p. i, doi. 10.1093/nar/gks1366
Publication type:: Article

Optochemical control of RNA interference in mammalian cells.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10518, doi. 10.1093/nar/gkt806

By:

Govan, Jeane M.;
Young, Douglas D.;
Lusic, Hrvoje;
Liu, Qingyang;
Lively, Mark O.;
Deiters, Alexander

Publication type:

Article

Catalytic mechanism of α-phosphate attack in dUTPase is revealed by X-ray crystallographic snapshots of distinct intermediates, 31P-NMR spectroscopy and reaction path modelling.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10542

By:

Barabás, Orsolya;
Németh, Veronika;
Bodor, Andrea;
Perczel, András;
Rosta, Edina;
Kele, Zoltán;
Zagyva, Imre;
Szabadka, Zoltán;
Grolmusz, Vince I.;
Wilmanns, Matthias;
Vértessy, Beáta G.

Publication type:

Article

DNA polymerase δ stalls on telomeric lagging strand templates independently from G-quadruplex formation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10323, doi. 10.1093/nar/gkt813

By:

Lormand, Justin D.;
Buncher, Noah;
Murphy, Connor T.;
Kaur, Parminder;
Lee, Marietta Y.;
Burgers, Peter;
Wang, Hong;
Kunkel, Thomas A.;
Opresko, Patricia L.

Publication type:

Article

E2F2 and CREB cooperatively regulate transcriptional activity of cell cycle genes.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10185, doi. 10.1093/nar/gkt821

By:

Laresgoiti, Usua;
Apraiz, Aintzane;
Olea, Miguel;
Mitxelena, Jone;
Osinalde, Nerea;
Rodriguez, José A.;
Fullaondo, Asier;
Zubiaga, Ana M.

Publication type:

Article

Single transcriptional and translational preQ1 riboswitches adopt similar pre-folded ensembles that follow distinct folding pathways into the same ligand-bound structure.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10462, doi. 10.1093/nar/gkt798

By:

Suddala, Krishna C.;
Rinaldi, Arlie J.;
Feng, Jun;
Mustoe, Anthony M.;
Eichhorn, Catherine D.;
Liberman, Joseph A.;
Wedekind, Joseph E.;
Al-Hashimi, Hashim M.;
Brooks, Charles L.;
Walter, Nils G.

Publication type:

Article

Sequence selectivity of the cleavage sites induced by topoisomerase I inhibitors: a molecular dynamics study.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10010, doi. 10.1093/nar/gkt791

By:

Siu, Fung-Ming;
Pommier, Yves

Publication type:

Article

Dissecting the oligonucleotide binding properties of a disordered chaperone protein using surface plasmon resonance.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10414, doi. 10.1093/nar/gkt792

By:

Baltzinger, Mireille;
Sharma, Kamal Kant;
Mély, Yves;
Altschuh, Danièle

Publication type:

Article

A transient α-helical molecular recognition element in the disordered N-terminus of the Sgs1 helicase is critical for chromosome stability and binding of Top3/Rmi1.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10215, doi. 10.1093/nar/gkt817

By:

Kennedy, Jessica A.;
Daughdrill, Gary W.;
Schmidt, Kristina H.

Publication type:

Article

Structure of the human telomere in Na+ solution: an antiparallel (2+2) G-quadruplex scaffold reveals additional diversity.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10556, doi. 10.1093/nar/gkt771

By:

Lim, Kah Wai;
Ng, Veronica Chinn Min;
Martín-Pintado, Nerea;
Heddi, Brahim;
Phan, Anh Tuân

Publication type:

Article

Antisense transcripts enhanced by camptothecin at divergent CpG-island promoters associated with bursts of topoisomerase I-DNA cleavage complex and R-loop formation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10110, doi. 10.1093/nar/gkt778

By:

Marinello, Jessica;
Chillemi, Giovanni;
Bueno, Susana;
Manzo, Stefano G.;
Capranico, Giovanni

Publication type:

Article

Suppression of HPV-16 late L1 5′-splice site SD3632 by binding of hnRNP D proteins and hnRNP A2/B1 to upstream AUAGUA RNA motifs.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10488, doi. 10.1093/nar/gkt803

By:

Li, Xiaoze;
Johansson, Cecilia;
Glahder, Jacob;
Mossberg, Ann-Kristin;
Schwartz, Stefan

Publication type:

Article

High-resolution microbial community reconstruction by integrating short reads from multiple 16S rRNA regions.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. e205, doi. 10.1093/nar/gkt1070

By:

Amir, Amnon;
Zeisel, Amit;
Zuk, Or;
Elgart, Michael;
Stern, Shay;
Shamir, Ohad;
Turnbaugh, Peter J.;
Soen, Yoav;
Shental, Noam

Publication type:

Article

Long non-coding RNA identification over mouse brain development by integrative modeling of chromatin and genomic features.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10044, doi. 10.1093/nar/gkt818

By:

Lv, Jie;
Liu, Hongbo;
Huang, Zhijun;
Su, Jianzhong;
He, Hongjuan;
Xiu, Youcheng;
Zhang, Yan;
Wu, Qiong

Publication type:

Article

Structural insights into the functions of the FANCM-FAAP24 complex in DNA repair.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10573, doi. 10.1093/nar/gkt788

By:

Yang, Hui;
Zhang, Tianlong;
Tao, Ye;
Wang, Fang;
Tong, Liang;
Ding, Jianping

Publication type:

Article

Comprehensive analysis of the functional microRNA–mRNA regulatory network identifies miRNA signatures associated with glioma malignant progression.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. e203, doi. 10.1093/nar/gkt1054

By:

Li, Yongsheng;
Xu, Juan;
Chen, Hong;
Bai, Jing;
Li, Shengli;
Zhao, Zheng;
Shao, Tingting;
Jiang, Tao;
Ren, Huan;
Kang, Chunsheng;
Li, Xia

Publication type:

Article

Mismatch repair protein MSH2 regulates translesion DNA synthesis following exposure of cells to UV radiation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10312, doi. 10.1093/nar/gkt793

By:

Lv, Lingna;
Wang, Fengli;
Ma, Xiaolu;
Yang, Yeran;
Wang, Zhifeng;
Liu, Hongmei;
Li, Xiaoling;
Liu, Zhenbo;
Zhang, Ting;
Huang, Min;
Friedberg, Errol C.;
Tang, Tie-Shan;
Guo, Caixia

Publication type:

Article

On the structural basis and design guidelines for type II topoisomerase-targeting anticancer drugs.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10630, doi. 10.1093/nar/gkt828

By:

Wu, Chyuan-Chuan;
Li, Yi-Ching;
Wang, Ying-Ren;
Li, Tsai-Kun;
Chan, Nei-Li

Publication type:

Article

In-cell optical imaging of exogenous G-quadruplex DNA by fluorogenic ligands.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10605, doi. 10.1093/nar/gkt814

By:

Tseng, Ting-Yuan;
Wang, Zi-Fu;
Chien, Cheng-Hao;
Chang, Ta-Chau

Publication type:

Article

On the biophysics and kinetics of toehold-mediated DNA strand displacement.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10641, doi. 10.1093/nar/gkt801

By:

Srinivas, Niranjan;
Ouldridge, Thomas E.;
Šulc, Petr;
Schaeffer, Joseph M.;
Yurke, Bernard;
Louis, Ard A.;
Doye, Jonathan P. K.;
Winfree, Erik

Publication type:

Article

Phosphorylated (pT371)TRF1 is recruited to sites of DNA damage to facilitate homologous recombination and checkpoint activation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10268, doi. 10.1093/nar/gkt775

By:

McKerlie, Megan;
Walker, John R.;
Mitchell, Taylor R. H.;
Wilson, Florence R.;
Zhu, Xu-Dong

Publication type:

Article

Bioinformatic analysis reveals an evolutional selection for DNA:RNA hybrid G-quadruplex structures as putative transcription regulatory elements in warm-blooded animals.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10379, doi. 10.1093/nar/gkt781

By:

Xiao, Shan;
Zhang, Jia-yu;
Zheng, Ke-wei;
Hao, Yu-hua;
Tan, Zheng

Publication type:

Article

ATR kinase activation in G1 phase facilitates the repair of ionizing radiation-induced DNA damage.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10334, doi. 10.1093/nar/gkt833

By:

Gamper, Armin M.;
Rofougaran, Reza;
Watkins, Simon C.;
Greenberger, Joel S.;
Beumer, Jan H.;
Bakkenist, Christopher J.

Publication type:

Article

Opening pathways of the DNA clamps proliferating cell nuclear antigen and Rad9-Rad1-Hus1.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10020, doi. 10.1093/nar/gkt810

By:

Xu, Xiaojun;
Guardiani, Carlo;
Yan, Chunli;
Ivanov, Ivaylo

Publication type:

Article

ERK phosphorylation of MED14 in promoter complexes during mitogen-induced gene activation by Elk-1.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10241, doi. 10.1093/nar/gkt837

By:

Galbraith, Matthew D.;
Saxton, Janice;
Li, Li;
Shelton, Samuel J.;
Zhang, Hongmei;
Espinosa, Joaquin M.;
Shaw, Peter E.

Publication type:

Article

DHX9 helicase is involved in preventing genomic instability induced by alternatively structured DNA in human cells.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10345, doi. 10.1093/nar/gkt804

By:

Jain, Aklank;
Bacolla, Albino;
del Mundo, Imee M.;
Zhao, Junhua;
Wang, Guliang;
Vasquez, Karen M.

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 22, p. ii, doi. 10.1093/nar/gks1404
Publication type:: Article

Solution structure of the major G-quadruplex formed in the human VEGF promoter in K+: insights into loop interactions of the parallel G-quadruplexes.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10584, doi. 10.1093/nar/gkt784

By:

Agrawal, Prashansa;
Hatzakis, Emmanuel;
Guo, Kexiao;
Carver, Megan;
Yang, Danzhou

Publication type:

Article

Interdomain contacts control folding of transcription factor RfaH.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10077, doi. 10.1093/nar/gkt779

By:

Tomar, Sushil Kumar;
Knauer, Stefan H.;
NandyMazumdar, Monali;
Rösch, Paul;
Artsimovitch, Irina

Publication type:

Article

The head module of Mediator directs activation of preloaded RNAPII in vivo.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10124, doi. 10.1093/nar/gkt796

By:

Lee, Sarah K.;
Chen, Xu;
Huang, Liangqun;
Stargell, Laurie A.

Publication type:

Article

Histone posttranslational modifications and cell fate determination: lens induction requires the lysine acetyltransferases CBP and p300.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10199, doi. 10.1093/nar/gkt824

By:

Wolf, Louise;
Harrison, Wilbur;
Huang, Jie;
Xie, Qing;
Xiao, Ningna;
Sun, Jian;
Kong, Lingkun;
Lachke, Salil A.;
Kuracha, Murali R.;
Govindarajan, Venkatesh;
Brindle, Paul K.;
Ashery-Padan, Ruth;
Beebe, David C.;
Overbeek, Paul A.;
Cvekl, Ales

Publication type:

Article

Mutant DnaAs of Escherichia coli that are refractory to negative control.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10254, doi. 10.1093/nar/gkt774

By:

Chodavarapu, Sundari;
Felczak, Magdalena M.;
Simmons, Lyle A.;
Murillo, Alec;
Kaguni, Jon M.

Publication type:

Article

Combining Hi-C data with phylogenetic correlation to predict the target genes of distal regulatory elements in human genome.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10391, doi. 10.1093/nar/gkt785

By:

Lu, Yulan;
Zhou, Yuanpeng;
Tian, Weidong

Publication type:

Article

HapFABIA: Identification of very short segments of identity by descent characterized by rare variants in large sequencing data.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. e202, doi. 10.1093/nar/gkt1013

By:

Hochreiter, Sepp

Publication type:

Article

Self-duplexing CUG repeats selectively inhibit mutant huntingtin expression.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10426, doi. 10.1093/nar/gkt825

By:

Fiszer, Agnieszka;
Olejniczak, Marta;
Galka-Marciniak, Paulina;
Mykowska, Agnieszka;
Krzyzosiak, Wlodzimierz J.

Publication type:

Article

The mycobacterial antibiotic resistance determinant WhiB7 acts as a transcriptional activator by binding the primary sigma factor SigA (RpoV).

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10062, doi. 10.1093/nar/gkt751

By:

Burian, Ján;
Yim, Grace;
Hsing, Michael;
Axerio-Cilies, Peter;
Cherkasov, Artem;
Spiegelman, George B.;
Thompson, Charles J.

Publication type:

Article

The splicing landscape is globally reprogrammed during male meiosis.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10170, doi. 10.1093/nar/gkt811

By:

Schmid, Ralf;
Grellscheid, Sushma Nagaraja;
Ehrmann, Ingrid;
Dalgliesh, Caroline;
Danilenko, Marina;
Paronetto, Maria Paola;
Pedrotti, Simona;
Grellscheid, David;
Dixon, Richard J.;
Sette, Claudio;
Eperon, Ian C.;
Elliott, David J.

Publication type:

Article

Principles of self-organization in biological pathways: a hypothesis on the autogenous association of alpha-synuclein.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 9987, doi. 10.1093/nar/gkt794

By:

Zanzoni, Andreas;
Marchese, Domenica;
Agostini, Federico;
Bolognesi, Benedetta;
Cirillo, Davide;
Botta-Orfila, Maria;
Livi, Carmen Maria;
Rodriguez-Mulero, Silvia;
Tartaglia, Gian Gaetano

Publication type:

Article

Structural insights into Paf1 complex assembly and histone binding.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10619, doi. 10.1093/nar/gkt819

By:

Chu, Xinlei;
Qin, Xiaohong;
Xu, Huisha;
Li, Lei;
Wang, Zheng;
Li, Fengzhi;
Xie, Xingqiao;
Zhou, Hao;
Shen, Yuequan;
Long, Jiafu

Publication type:

Article

Structure-function analysis of Hmo1 unveils an ancestral organization of HMG-Box factors involved in ribosomal DNA transcription from yeast to human.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10135, doi. 10.1093/nar/gkt770

By:

Albert, Benjamin;
Colleran, Christine;
Léger-Silvestre, Isabelle;
Berger, Axel B.;
Dez, Christophe;
Normand, Christophe;
Perez-Fernandez, Jorge;
McStay, Brian;
Gadal, Olivier

Publication type:

Article

Expression-level optimization of a multi-enzyme pathway in the absence of a high-throughput assay.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 22, p. 10668, doi. 10.1093/nar/gkt809

By:

Lee, Michael E.;
Aswani, Anil;
Han, Audrey S.;
Tomlin, Claire J.;
Dueber, John E.

Publication type:

Article