Works matching IS 03051048 AND DT 2013 AND VI 41 AND IP 20

Results: 43

Structural and functional insights into the molecular mechanism of rRNA m6A methyltransferase RlmJ.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9537, doi. 10.1093/nar/gkt719

By:

Punekar, Avinash S.;
Liljeruhm, Josefine;
Shepherd, Tyson R.;
Forster, Anthony C.;
Selmer, Maria

Publication type:

Article

Replication fork collapse is a major cause of the high mutation frequency at three-base lesion clusters.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9339, doi. 10.1093/nar/gkt731

By:

Sedletska, Yuliya;
Radicella, J. Pablo;
Sage, Evelyne

Publication type:

Article

Characterization of novel inhibitors of HIV-1 replication that function via alteration of viral RNA processing and rev function.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9471, doi. 10.1093/nar/gkt727

By:

Wong, Raymond W.;
Balachandran, Ahalya;
Haaland, Matthew;
Stoilov, Peter;
Cochrane, Alan

Publication type:

Article

Interaction of bacterial fatty-acid-displaced regulators with DNA is interrupted by tyrosine phosphorylation in the helix-turn-helix domain.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9371, doi. 10.1093/nar/gkt709

By:

Derouiche, Abderahmane;
Bidnenko, Vladimir;
Grenha, Rosa;
Pigonneau, Nathalie;
Ventroux, Magali;
Franz-Wachtel, Mirita;
Nessler, Sylvie;
Noirot-Gros, Marie-Françoise;
Mijakovic, Ivan

Publication type:

Article

Efficient generation of large-scale genome-modified mice using gRNA and CAS9 endonuclease.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. e187, doi. 10.1093/nar/gkt772

By:

Fujii, Wataru;
Kawasaki, Kurenai;
Sugiura, Koji;
Naito, Kunihiko

Publication type:

Article

YoeB–ribosome structure: a canonical RNase that requires the ribosome for its specific activity.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9549, doi. 10.1093/nar/gkt742

By:

Feng, Shu;
Chen, Yun;
Kamada, Katsuhiko;
Wang, Han;
Tang, Kai;
Wang, Meitian;
Gao, Yong-Gui

Publication type:

Article

Increasing the complexity of chromatin: functionally distinct roles for replication-dependent histone H2A isoforms in cell proliferation and carcinogenesis.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9284, doi. 10.1093/nar/gkt736

By:

Singh, Rajbir;
Mortazavi, Amir;
Telu, Kelly H.;
Nagarajan, Prabakaran;
Lucas, David M.;
Thomas-Ahner, Jennifer M.;
Clinton, Steven K.;
Byrd, John C.;
Freitas, Michael A.;
Parthun, Mark R.

Publication type:

Article

Identification and characterization of a hitherto unknown nucleotide-binding domain and an intricate interdomain regulation in HflX-a ribosome binding GTPase.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9557, doi. 10.1093/nar/gkt705

By:

Jain, Nikhil;
Vithani, Neha;
Rafay, Abu;
Prakash, Balaji

Publication type:

Article

Searching algorithm for type IV secretion system effectors 1.0: a tool for predicting type IV effectors and exploring their genomic context.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9218, doi. 10.1093/nar/gkt718

By:

Meyer, Damien F.;
Noroy, Christophe;
Moumène, Amal;
Raffaele, Sylvain;
Albina, Emmanuel;
Vachiéry, Nathalie

Publication type:

Article

Genome-wide single-cell-level screen for protein abundance and localization changes in response to DNA damage in S. cerevisiae.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9310, doi. 10.1093/nar/gkt715

By:

Mazumder, Aprotim;
Pesudo, Laia Quiros;
McRee, Siobhan;
Bathe, Mark;
Samson, Leona D.

Publication type:

Article

Efficient genome editing in Caenorhabditis elegans by CRISPR-targeted homologous recombination.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. e193, doi. 10.1093/nar/gkt805

By:

Chen, Changchun;
Fenk, Lorenz A.;
de Bono, Mario

Publication type:

Article

Functional assignment of KEOPS/EKC complex subunits in the biosynthesis of the universal t6A tRNA modification.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9484, doi. 10.1093/nar/gkt720

By:

Perrochia, Ludovic;
Guetta, Dorian;
Hecker, Arnaud;
Forterre, Patrick;
Basta, Tamara

Publication type:

Article

E-TALEN: a web tool to design TALENs for genome engineering.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. e190, doi. 10.1093/nar/gkt789

By:

Heigwer, Florian;
Kerr, Grainne;
Walther, Nike;
Glaeser, Kathrin;
Pelz, Oliver;
Breinig, Marco;
Boutros, Michael

Publication type:

Article

Use of extremely short Förster resonance energy transfer probes in real-time polymerase chain reaction.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. e191, doi. 10.1093/nar/gkt782

By:

Kutyavin, Igor V.

Publication type:

Article

CRISPR/Cas9 systems targeting β-globin and CCR5 genes have substantial off-target activity.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9584, doi. 10.1093/nar/gkt714

By:

Cradick, Thomas J.;
Fine, Eli J.;
Antico, Christopher J.;
Bao, Gang

Publication type:

Article

Yeast ribosomal protein L7 and its homologue Rlp7 are simultaneously present at distinct sites on pre-60S ribosomal particles.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9461, doi. 10.1093/nar/gkt726

By:

Babiano, Reyes;
Badis, Gwenael;
Saveanu, Cosmin;
Namane, Abdelkader;
Doyen, Antonia;
Díaz-Quintana, Antonio;
Jacquier, Alain;
Fromont-Racine, Micheline;
de la Cruz, Jesús

Publication type:

Article

Metal ion as both a cofactor and a probe of metal-binding sites in a uranyl-specific DNAzyme: a uranyl photocleavage study.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9361, doi. 10.1093/nar/gkt694

By:

Cepeda-Plaza, Marjorie;
Null, Eric L.;
Lu, Yi

Publication type:

Article

Robust gene silencing mediated by antisense small RNAs in the pathogenic protist Entamoeba histolytica.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9424, doi. 10.1093/nar/gkt717

By:

Morf, Laura;
Pearson, Richard J.;
Wang, Angelia S.;
Singh, Upinder

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 20, p. ii, doi. 10.1093/nar/gks1402
Publication type:: Article

Reversed-phase ion-pair liquid chromatography method for purification of duplex DNA with single base pair resolution.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. e194, doi. 10.1093/nar/gkt815

By:

Wysoczynski, Christina L.;
Roemer, Sarah C.;
Dostal, Vishantie;
Barkley, Robert M.;
Churchill, Mair E. A.;
Malarkey, Christopher S.

Publication type:

Article

Genome-wide analysis of Staufen-associated mRNAs identifies secondary structures that confer target specificity.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9438, doi. 10.1093/nar/gkt702

By:

Laver, John D.;
Li, Xiao;
Ancevicius, Kristin;
Westwood, J. Timothy;
Smibert, Craig A.;
Morris, Quaid D.;
Lipshitz, Howard D.

Publication type:

Article

Discovery of cell-type specific regulatory elements in the human genome using differential chromatin modification analysis.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9230, doi. 10.1093/nar/gkt712

By:

Chen, Chen;
Zhang, Shihua;
Zhang, Xiang-Sun

Publication type:

Article

Model of the Mediator middle module based on protein cross-linking.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9266

By:

Larivière, Laurent;
Plaschka, Clemens;
Seizl, Martin;
Petrotchenko, Evgeniy V.;
Wenzeck, Larissa;
Borchers, Christoph H.;
Cramer, Patrick

Publication type:

Article

Selection on codon bias in yeast: a transcriptional hypothesis.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9382, doi. 10.1093/nar/gkt740

By:

Trotta, Edoardo

Publication type:

Article

Purification of a specific native genomic locus for proteomic analysis.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. e195, doi. 10.1093/nar/gkt822

By:

Byrum, Stephanie D.;
Taverna, Sean D.;
Tackett, Alan J.

Publication type:

Article

Functional determinants of gate-DNA selection and cleavage by bacterial type II topoisomerases.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9411, doi. 10.1093/nar/gkt696

By:

Arnoldi, Elisa;
Pan, Xiao-Su;
Fisher, L Mark

Publication type:

Article

Mus81 nuclease and Sgs1 helicase are essential for meiotic recombination in a protist lacking a synaptonemal complex.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9296, doi. 10.1093/nar/gkt703

By:

Lukaszewicz, Agnieszka;
Howard-Till, Rachel A.;
Loidl, Josef

Publication type:

Article

Tagetitoxin inhibits transcription by stabilizing pre-translocated state of the elongation complex.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9257, doi. 10.1093/nar/gkt708

By:

Yuzenkova, Yulia;
Roghanian, Mohammad;
Bochkareva, Aleksandra;
Zenkin, Nikolay

Publication type:

Article

Yin and Yang of disease genes and death genes between reciprocally scale-free biological networks.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9209, doi. 10.1093/nar/gkt683

By:

Han, Hyun Wook;
Ohn, Jung Hun;
Moon, Jisook;
Kim, Ju Han

Publication type:

Article

Tracking in atomic detail the functional specializations in viral RecA helicases that occur during evolution.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9396, doi. 10.1093/nar/gkt713

By:

El Omari, Kamel;
Meier, Christoph;
Kainov, Denis;
Sutton, Geoff;
Grimes, Jonathan M.;
Poranen, Minna M.;
Bamford, Dennis H.;
Tuma, Roman;
Stuart, David I.;
Mancini, Erika J.

Publication type:

Article

PCNA promotes processive DNA end resection by Exo1.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9325, doi. 10.1093/nar/gkt672

By:

Chen, Xiaoqing;
Paudyal, Sharad C.;
Chin, Re-I;
You, Zhongsheng

Publication type:

Article

ss-siRNAs allele selectively inhibit ataxin-3 expression: multiple mechanisms for an alternative gene silencing strategy.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9570, doi. 10.1093/nar/gkt693

By:

Liu, Jing;
Yu, Dongbo;
Aiba, Yuichiro;
Pendergraff, Hannah;
Swayze, Eric E.;
Lima, Walt F.;
Hu, Jiaxin;
Prakash, Thazha P.;
Corey, David R.

Publication type:

Article

Demonstration of CRISPR/Cas9/sgRNA-mediated targeted gene modification in Arabidopsis, tobacco, sorghum and rice.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. e188, doi. 10.1093/nar/gkt780

By:

Jiang, Wenzhi;
Zhou, Huanbin;
Bi, Honghao;
Fromm, Michael;
Yang, Bing;
Weeks, Donald P.

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 20, p. i, doi. 10.1093/nar/gks1366
Publication type:: Article

Identification of the Rps28 binding motif from yeast Edc3 involved in the autoregulatory feedback loop controlling RPS28B mRNA decay.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9514, doi. 10.1093/nar/gkt607

By:

Kolesnikova, Olga;
Back, Régis;
Graille, Marc;
Séraphin, Bertrand

Publication type:

Article

G-rich VEGF aptamer with locked and unlocked nucleic acid modifications exhibits a unique G-quadruplex fold.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9524

By:

Marušič, Maja;
Veedu, Rakesh N.;
Wengel, Jesper;
Plavec, Janez

Publication type:

Article

RILES, a novel method for temporal analysis of the in vivo regulation of miRNA expression.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. e192, doi. 10.1093/nar/gkt797

By:

Ezzine, Safia;
Vassaux, Georges;
Pitard, Bruno;
Barteau, Benoit;
Malinge, Jean-Marc;
Midoux, Patrick;
Pichon, Chantal;
Baril, Patrick

Publication type:

Article

Amplified stretch of bottlebrush-coated DNA in nanofluidic channels.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. e189, doi. 10.1093/nar/gkt783

By:

Zhang, Ce;
Hernandez-Garcia, Armando;
Jiang, Kai;
Gong, Zongying;
Guttula, Durgarao;
Ng, Siow Yee;
Malar, Piravi P.;
van Kan, Jeroen A.;
Dai, Liang;
Doyle, Patrick S.;
Vries, Renko de;
van der Maarel, Johan R. C.

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 20, p. iii, doi. 10.1093/nar/gks1426
Publication type:: Article

Extracellular microRNAs are dynamic non-vesicular biomarkers of muscle turnover.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9500, doi. 10.1093/nar/gkt724

By:

Roberts, Thomas C.;
Godfrey, Caroline;
McClorey, Graham;
Vader, Pieter;
Briggs, Deborah;
Gardiner, Chris;
Aoki, Yoshitsugu;
Sargent, Ian;
Morgan, Jennifer E.;
Wood, Matthew J.A.

Publication type:

Article

Distinct isoforms of the Drosophila Brd4 homologue are present at enhancers, promoters and insulator sites.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9274, doi. 10.1093/nar/gkt722

By:

Kellner, Wendy A.;
Van Bortle, Kevin;
Li, Li;
Ramos, Edward;
Takenaka, Naomi;
Corces, Victor G.

Publication type:

Article

Topoisomerase II regulates yeast genes with singular chromatin architectures.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9243, doi. 10.1093/nar/gkt707

By:

Nikolaou, Christoforos;
Bermúdez, Ignacio;
Manichanh, Chaysavanh;
García-Martinez, José;
Guigó, Roderic;
Pérez-Ortín, José E.;
Roca, Joaquim

Publication type:

Article

Different functions for the domains of the Arabidopsis thaliana RMI1 protein in DNA cross-link repair, somatic and meiotic recombination.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 20, p. 9349, doi. 10.1093/nar/gkt730

By:

Bonnet, Simone;
Knoll, Alexander;
Hartung, Frank;
Puchta, Holger

Publication type:

Article