Works matching IS 03051048 AND DT 2013 AND VI 41 AND IP 2

Results: 66

MicroRNAs contribute to the maintenance of cell-type-specific physiological characteristics: miR-192 targets Na+/K+-ATPase β1.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 1273, doi. 10.1093/nar/gks1228

By:

Mladinov, Domagoj;
Liu, Yong;
Mattson, David L.;
Liang, Mingyu

Publication type:

Article

Integrative annotation of chromatin elements from ENCODE data.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 827, doi. 10.1093/nar/gks1284

By:

Hoffman, Michael M.;
Ernst, Jason;
Wilder, Steven P.;
Kundaje, Anshul;
Harris, Robert S.;
Libbrecht, Max;
Giardine, Belinda;
Ellenbogen, Paul M.;
Bilmes, Jeffrey A.;
Birney, Ewan;
Hardison, Ross C.;
Dunham, Ian;
Kellis, Manolis;
Noble, William Stafford

Publication type:

Article

Steric antisense inhibition of AMPA receptor Q/R editing reveals tight coupling to intronic editing sites and splicing.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 1113, doi. 10.1093/nar/gks1044

By:

Penn, Andrew C.;
Balik, Ales;
Greger, Ingo H.

Publication type:

Article

The nucleoid-associated protein Dan organizes chromosomal DNA through rigid nucleoprotein filament formation in E. coli during anoxia.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 746, doi. 10.1093/nar/gks1126

By:

Lim, Ci Ji;
Lee, Sin Yi;
Teramoto, Jun;
Ishihama, Akira;
Yan, Jie

Publication type:

Article

Multiple RNA interactions position Mrd1 at the site of the small subunit pseudoknot within the 90S pre-ribosome.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 1178, doi. 10.1093/nar/gks1129

By:

Segerstolpe, Åsa;
Granneman, Sander;
Björk, Petra;
de Lima Alves, Flavia;
Rappsilber, Juri;
Andersson, Charlotta;
Högbom, Martin;
Tollervey, David;
Wieslander, Lars

Publication type:

Article

STAT1:DNA sequence-dependent binding modulation by phosphorylation, protein:protein interactions and small-molecule inhibition.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 754, doi. 10.1093/nar/gks1085

By:

Bonham, Andrew J.;
Wenta, Nikola;
Osslund, Leah M.;
Prussin, Aaron J.;
Vinkemeier, Uwe;
Reich, Norbert O.

Publication type:

Article

Trypanosome CNOT10 is essential for the integrity of the NOT deadenylase complex and for degradation of many mRNAs.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 1211, doi. 10.1093/nar/gks1133

By:

Färber, Valentin;
Erben, Esteban;
Sharma, Sahil;
Stoecklin, Georg;
Clayton, Christine

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 2, p. iii, doi. 10.1093/nar/gks1425
Publication type:: Article

Accumulation and loss of asymmetric non-CpG methylation during male germ-cell development.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 738, doi. 10.1093/nar/gks1117

By:

Ichiyanagi, Tomoko;
Ichiyanagi, Kenji;
Miyake, Miho;
Sasaki, Hiroyuki

Publication type:

Article

Genomic deletion induced by Tol2 transposon excision in zebrafish.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. e36, doi. 10.1093/nar/gks1035

By:

Huang, Peng;
Xu, Linjie;
Liang, Wei;
Tam, Chi Ian;
Zhang, Yutian;
Qi, Fei;
Zhu, Zuoyan;
Lin, Shuo;
Zhang, Bo

Publication type:

Article

Reverse engineering a mouse embryonic stem cell-specific transcriptional network reveals a new modulator of neuronal differentiation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 711, doi. 10.1093/nar/gks1136

By:

De Cegli, Rossella;
Iacobacci, Simona;
Flore, Gemma;
Gambardella, Gennaro;
Mao, Lei;
Cutillo, Luisa;
Lauria, Mario;
Klose, Joachim;
Illingworth, Elizabeth;
Banfi, Sandro;
di Bernardo, Diego

Publication type:

Article

High-resolution transcriptome and genome-wide dynamics of RNA polymerase and NusA in Mycobacterium tuberculosis.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 961, doi. 10.1093/nar/gks1260

By:

Uplekar, Swapna;
Rougemont, Jacques;
Cole, Stewart T.;
Sala, Claudia

Publication type:

Article

A complex network framework for unbiased statistical analyses of DNA–DNA contact maps.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 701, doi. 10.1093/nar/gks1096

By:

Kruse, Kai;
Sewitz, Sven;
Babu, M. Madan

Publication type:

Article

Purification of DNA-origami nanostructures by rate-zonal centrifugation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. e40, doi. 10.1093/nar/gks1070

By:

Lin, Chenxiang;
Perrault, Steven D.;
Kwak, Minseok;
Graf, Franziska;
Shih, William M.

Publication type:

Article

A multi-parametric flow cytometric assay to analyze DNA–protein interactions.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. e38, doi. 10.1093/nar/gks1034

By:

Arbab, Mandana;
Mahony, Shaun;
Cho, Hyunjii;
Chick, Joel M.;
Rolfe, P. Alexander;
van Hoff, John Peter;
Morris, Viveca W.S.;
Gygi, Steven P.;
Maas, Richard L.;
Gifford, David K.;
Sherwood, Richard I.

Publication type:

Article

Promiscuous behaviour of archaeal ribosomal proteins: Implications for eukaryotic ribosome evolution.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 1284, doi. 10.1093/nar/gks1259

By:

Armache, Jean-Paul;
Anger, Andreas M.;
Márquez, Viter;
Franckenberg, Sibylle;
Fröhlich, Thomas;
Villa, Elizabeth;
Berninghausen, Otto;
Thomm, Michael;
Arnold, Georg J.;
Beckmann, Roland;
Wilson, Daniel N.

Publication type:

Article

Physical and functional interaction between yeast Pif1 helicase and Rim1 single-stranded DNA binding protein.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 1029, doi. 10.1093/nar/gks1088

By:

Ramanagoudr-Bhojappa, Ramanagouda;
Blair, Lauren P.;
Tackett, Alan J.;
Raney, Kevin D.

Publication type:

Article

DNA damage-induced cytotoxicity is mediated by the cooperative interaction of phospho-NF-κB p50 and a single nucleotide in the κB-site.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 764, doi. 10.1093/nar/gks1120

By:

Crawley, Clayton D.;
Raleigh, David R.;
Kang, Shijun;
Voce, David J.;
Schmitt, Adam M.;
Weichselbaum, Ralph R.;
Yamini, Bakhtiar

Publication type:

Article

RECQL5 plays co-operative and complementary roles with WRN syndrome helicase.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 881, doi. 10.1093/nar/gks1134

By:

Popuri, Venkateswarlu;
Huang, Jing;
Ramamoorthy, Mahesh;
Tadokoro, Takashi;
Croteau, Deborah L.;
Bohr, Vilhelm A.

Publication type:

Article

Identifying protein interaction subnetworks by a bagging Markov random field-based method.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. e42, doi. 10.1093/nar/gks951

By:

Chen, Li;
Xuan, Jianhua;
Riggins, Rebecca B.;
Wang, Yue;
Clarke, Robert

Publication type:

Article

Long non-coding RNAs function annotation: a global prediction method based on bi-colored networks.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. e35, doi. 10.1093/nar/gks967

By:

Guo, Xingli;
Gao, Lin;
Liao, Qi;
Xiao, Hui;
Ma, Xiaoke;
Yang, Xiaofei;
Luo, Haitao;
Zhao, Guoguang;
Bu, Dechao;
Jiao, Fei;
Shao, Qixiang;
Chen, RunSheng;
Zhao, Yi

Publication type:

Article

Gemin5 promotes IRES interaction and translation control through its C-terminal region.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 1017, doi. 10.1093/nar/gks1212

By:

Piñeiro, David;
Fernández, Noemi;
Ramajo, Jorge;
Martínez-Salas, Encarnación

Publication type:

Article

Force and ATP hydrolysis dependent regulation of RecA nucleoprotein filament by single-stranded DNA binding protein.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 924, doi. 10.1093/nar/gks1162

By:

Fu, Hongxia;
Le, Shimin;
Chen, Hu;
Muniyappa, K.;
Yan, Jie

Publication type:

Article

Human mitochondrial RNA decay mediated by PNPase–hSuv3 complex takes place in distinct foci.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 1223, doi. 10.1093/nar/gks1130

By:

Borowski, Lukasz S.;
Dziembowski, Andrzej;
Hejnowicz, Monika S.;
Stepien, Piotr P.;
Szczesny, Roman J.

Publication type:

Article

Activity-regulated RNA editing in select neuronal subfields in hippocampus.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 1124, doi. 10.1093/nar/gks1045

By:

Balik, Ales;
Penn, Andrew C.;
Nemoda, Zsofia;
Greger, Ingo H.

Publication type:

Article

NIPP1 maintains EZH2 phosphorylation and promoter occupancy at proliferation-related target genes.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 842, doi. 10.1093/nar/gks1255

By:

Minnebo, Nikki;
Görnemann, Janina;
O’Connell, Nichole;
Van Dessel, Nele;
Derua, Rita;
Vermunt, Marit Willemijn;
Page, Rebecca;
Beullens, Monique;
Peti, Wolfgang;
Van Eynde, Aleyde;
Bollen, Mathieu

Publication type:

Article

Selection of tRNA charging quality control mechanisms that increase mistranslation of the genetic code.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 1104, doi. 10.1093/nar/gks1240

By:

Yadavalli, Srujana S.;
Ibba, Michael

Publication type:

Article

Las1 interacts with Grc3 polynucleotide kinase and is required for ribosome synthesis in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 1135, doi. 10.1093/nar/gks1086

By:

Castle, Christopher D.;
Sardana, Richa;
Dandekar, Varada;
Borgianini, Victoria;
Johnson, Arlen W.;
Denicourt, Catherine

Publication type:

Article

Structure, phosphorylation and U2AF65 binding of the N-terminal domain of splicing factor 1 during 3′-splice site recognition.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 1343, doi. 10.1093/nar/gks1097

By:

Zhang, Yun;
Madl, Tobias;
Bagdiul, Ivona;
Kern, Thomas;
Kang, Hyun-Seo;
Zou, Peijian;
Mäusbacher, Nina;
Sieber, Stephan A.;
Krämer, Angela;
Sattler, Michael

Publication type:

Article

The Type ISP Restriction–Modification enzymes LlaBIII and LlaGI use a translocation–collision mechanism to cleave non-specific DNA distant from their recognition sites.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 1071, doi. 10.1093/nar/gks1209

By:

Šišáková, Eva;
van Aelst, Kara;
Diffin, Fiona M.;
Szczelkun, Mark D.

Publication type:

Article

SMG5–PNRC2 is functionally dominant compared with SMG5–SMG7 in mammalian nonsense-mediated mRNA decay.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 1319, doi. 10.1093/nar/gks1222

By:

Cho, Hana;
Han, Sisu;
Choe, Junho;
Park, Seung Gu;
Choi, Sun Shim;
Kim, Yoon Ki

Publication type:

Article

Phosphoinositide 3-kinase beta controls replication factor C assembly and function.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 855, doi. 10.1093/nar/gks1095

By:

Redondo-Muñoz, Javier;
Josefa Rodríguez, María;
Silió, Virginia;
Pérez-García, Vicente;
María Valpuesta, José;
Carrera, Ana C.

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 2, p. i, doi. 10.1093/nar/gks1366
Publication type:: Article

Implication of the SMN complex in the biogenesis and steady state level of the Signal Recognition Particle.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 1255, doi. 10.1093/nar/gks1224

By:

Piazzon, Nathalie;
Schlotter, Florence;
Lefebvre, Suzie;
Dodré, Maxime;
Méreau, Agnès;
Soret, Johann;
Besse, Aurore;
Barkats, Martine;
Bordonné, Rémy;
Branlant, Christiane;
Massenet, Séverine

Publication type:

Article

An in vitro network of intermolecular interactions between viral RNA segments of an avian H5N2 influenza A virus: comparison with a human H3N2 virus.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 1241, doi. 10.1093/nar/gks1181

By:

Gavazzi, Cyrille;
Isel, Catherine;
Fournier, Emilie;
Moules, Vincent;
Cavalier, Annie;
Thomas, Daniel;
Lina, Bruno;
Marquet, Roland

Publication type:

Article

UV damage endonuclease employs a novel dual-dinucleotide flipping mechanism to recognize different DNA lesions.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 1363, doi. 10.1093/nar/gks1127

By:

Meulenbroek, Elisabeth M.;
Peron Cane, Caroline;
Jala, Isabelle;
Iwai, Shigenori;
Moolenaar, Geri F.;
Goosen, Nora;
Pannu, Navraj S.

Publication type:

Article

Crystal structures of Thermotoga maritima reverse gyrase: inferences for the mechanism of positive DNA supercoiling.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 1058, doi. 10.1093/nar/gks1073

By:

Rudolph, Markus G.;
del Toro Duany, Yoandris;
Jungblut, Stefan P.;
Ganguly, Agneyo;
Klostermeier, Dagmar

Publication type:

Article

Eroded human telomeres are more prone to remain uncapped and to trigger a G2 checkpoint response.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 900, doi. 10.1093/nar/gks1121

By:

Jullien, Laurent;
Mestre, Marie;
Roux, Pierre;
Gire, Véronique

Publication type:

Article

Rapid degradation of replication-dependent histone mRNAs largely occurs on mRNAs bound by nuclear cap-binding proteins 80 and 20.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 1307, doi. 10.1093/nar/gks1196

By:

Choe, Junho;
Kim, Kyoung Mi;
Park, Sungjin;
Lee, Ye Kyung;
Song, Ok-Kyu;
Kim, Min Kyung;
Lee, Byung-Gil;
Song, Hyun Kyu;
Kim, Yoon Ki

Publication type:

Article

A versatile cis-blocking and trans-activation strategy for ribozyme characterization.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. e41, doi. 10.1093/nar/gks1036

By:

Kennedy, Andrew B.;
Liang, Joe C.;
Smolke, Christina D.

Publication type:

Article

Conserved boundary elements from the Hox complex of mosquito, Anopheles gambiae.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 804, doi. 10.1093/nar/gks1178

By:

Ahanger, Sajad H.;
Srinivasan, Arumugam;
Vasanthi, Dasari;
Shouche, Yogesh S.;
Mishra, Rakesh K.

Publication type:

Article

Single-molecule FRET analysis of DNA binding and bending by yeast HMGB protein Nhp6A.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 1372, doi. 10.1093/nar/gks1208

By:

Coats, Julie E.;
Lin, Yuyen;
Rueter, Emily;
Maher, L. James;
Rasnik, Ivan

Publication type:

Article

Trypanosoma brucei BRCA2 acts in a life cycle-specific genome stability process and dictates BRC repeat number-dependent RAD51 subnuclear dynamics.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 943, doi. 10.1093/nar/gks1192

By:

Trenaman, Anna;
Hartley, Claire;
Prorocic, Marko;
Passos-Silva, Danielle G.;
Hoek, Moniek van den;
Nechyporuk-Zloy, Volodymyr;
Machado, Carlos R.;
McCulloch, Richard

Publication type:

Article

Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 1164, doi. 10.1093/nar/gks1098

By:

Polikepahad, Sumanth;
Corry, David B.

Publication type:

Article

DNA cleavage by Type ISP Restriction–Modification enzymes is initially targeted to the 3′-5′ strand.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 1081, doi. 10.1093/nar/gks1210

By:

van Aelst, Kara;
Šišáková, Eva;
Szczelkun, Mark D.

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 2, p. ii, doi. 10.1093/nar/gks1401
Publication type:: Article

Rrp5p, Noc1p and Noc2p form a protein module which is part of early large ribosomal subunit precursors in S. cerevisiae.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 1191, doi. 10.1093/nar/gks1056

By:

Hierlmeier, Thomas;
Merl, Juliane;
Sauert, Martina;
Perez-Fernandez, Jorge;
Schultz, Patrick;
Bruckmann, Astrid;
Hamperl, Stephan;
Ohmayer, Uli;
Rachel, Reinhard;
Jacob, Anja;
Hergert, Kristin;
Deutzmann, Rainer;
Griesenbeck, Joachim;
Hurt, Ed;
Milkereit, Philipp;
Baßler, Jochen;
Tschochner, Herbert

Publication type:

Article

Detection of alternative lengthening of telomeres by telomere quantitative PCR.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. e34, doi. 10.1093/nar/gks781

By:

Lau, Loretta M. S.;
Dagg, Rebecca A.;
Henson, Jeremy D.;
Au, Amy Y. M.;
Royds, Janice A.;
Reddel, Roger R.

Publication type:

Article

Transposon integration enhances expression of stress response genes.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 775, doi. 10.1093/nar/gks1185

By:

Feng, Gang;
Leem, Young-Eun;
Levin, Henry L.

Publication type:

Article

DiffSplice: the genome-wide detection of differential splicing events with RNA-seq.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. e39, doi. 10.1093/nar/gks1026

By:

Hu, Yin;
Huang, Yan;
Du, Ying;
Orellana, Christian F.;
Singh, Darshan;
Johnson, Amy R.;
Monroy, Anaïs;
Kuan, Pei-Fen;
Hammond, Scott M.;
Makowski, Liza;
Randell, Scott H.;
Chiang, Derek Y.;
Hayes, D. Neil;
Jones, Corbin;
Liu, Yufeng;
Prins, Jan F.;
Liu, Jinze

Publication type:

Article