Works matching IS 03051048 AND DT 2013 AND VI 41 AND IP 18

Results: 44

The PRP6-like splicing factor STA1 is involved in RNA-directed DNA methylation by facilitating the production of Pol V-dependent scaffold RNAs.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8489, doi. 10.1093/nar/gkt639

By:

Dou, Kun;
Huang, Chao-Feng;
Ma, Ze-Yang;
Zhang, Cui-Jun;
Zhou, Jin-Xing;
Huang, Huan-Wei;
Cai, Tao;
Tang, Kai;
Zhu, Jian-Kang;
He, Xin-Jian

Publication type:

Article

HCV IRES interacts with the 18S rRNA to activate the 40S ribosome for subsequent steps of translation initiation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8706, doi. 10.1093/nar/gkt632

By:

Malygin, Alexey A.;
Kossinova, Olga A.;
Shatsky, Ivan N.;
Karpova, Galina G.

Publication type:

Article

Concordance of gene expression in human protein complexes reveals tissue specificity and pathology.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. e171

By:

Börnigen, Daniela;
Pers, Tune H.;
Thorrez, Lieven;
Huttenhower, Curtis;
Moreau, Yves;
Brunak, Søren

Publication type:

Article

In-gel probing of individual RNA conformers within a mixed population reveals a dimerization structural switch in the HIV-1 leader.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. e174, doi. 10.1093/nar/gkt690

By:

Kenyon, Julia C.;
Prestwood, Liam J.;
Le Grice, Stuart F. J.;
Lever, Andrew M. L.

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 18, p. ii, doi. 10.1093/nar/gks1399
Publication type:: Article

Integrated analysis of genome-wide DNA methylation and gene expression profiles in molecular subtypes of breast cancer.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8464, doi. 10.1093/nar/gkt643

By:

Rhee, Je-Keun;
Kim, Kwangsoo;
Chae, Heejoon;
Evans, Jared;
Yan, Pearlly;
Zhang, Byoung-Tak;
Gray, Joe;
Spellman, Paul;
Huang, Tim H.-M.;
Nephew, Kenneth P.;
Kim, Sun

Publication type:

Article

Evidence of direct complementary interactions between messenger RNAs and their cognate proteins.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8434, doi. 10.1093/nar/gkt618

By:

Polyansky, Anton A.;
Zagrovic, Bojan

Publication type:

Article

Analysis of epigenetic stability and conversions in Saccharomyces cerevisiae reveals a novel role of CAF-I in position-effect variegation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8475, doi. 10.1093/nar/gkt623

By:

Jeffery, Daniel C. B.;
Wyse, Brandon A.;
Rehman, Muhammad Attiq;
Brown, Geoffrey W.;
You, Zhiying;
Oshidari, Roxanne;
Masai, Hisao;
Yankulov, Krassimir Y.

Publication type:

Article

RNA duplexes with abasic substitutions are potent and allele-selective inhibitors of huntingtin and ataxin-3 expression.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8788, doi. 10.1093/nar/gkt594

By:

Liu, Jing;
Pendergraff, Hannah;
Narayanannair, K. Jayaprakash;
Lackey, Jeremy G.;
Kuchimanchi, Satya;
Rajeev, Kallanthottathil G.;
Manoharan, Muthiah;
Hu, Jiaxin;
Corey, David R.

Publication type:

Article

Integrative analysis of tissue-specific methylation and alternative splicing identifies conserved transcription factor binding motifs.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8503, doi. 10.1093/nar/gkt652

By:

Wan, Jun;
Oliver, Verity F.;
Zhu, Heng;
Zack, Donald J.;
Qian, Jiang;
Merbs, Shannath L.

Publication type:

Article

MREdictor: a two-step dynamic interaction model that accounts for mRNA accessibility and Pumilio binding accurately predicts microRNA targets.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8421, doi. 10.1093/nar/gkt629

By:

Incarnato, Danny;
Neri, Francesco;
Diamanti, Daniela;
Oliviero, Salvatore

Publication type:

Article

SIRT6 exhibits nucleosome-dependent deacetylase activity.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8537, doi. 10.1093/nar/gkt642

By:

Gil, Reuven;
Barth, Shaul;
Kanfi, Yariv;
Cohen, Haim Y.

Publication type:

Article

Quantitative set analysis for gene expression: a method to quantify gene set differential expression including gene-gene correlations.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. e170, doi. 10.1093/nar/gkt660

By:

Yaari, Gur;
Bolen, Christopher R.;
Thakar, Juilee;
Kleinstein, Steven H.

Publication type:

Article

Universal digital high-resolution melt: a novel approach to broad-based profiling of heterogeneous biological samples.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. e175, doi. 10.1093/nar/gkt684

By:

Fraley, Stephanie I.;
Hardick, Justin;
Jo Masek, Billie;
Athamanolap, Pornpat;
Rothman, Richard E.;
Gaydos, Charlotte A.;
Carroll, Karen C.;
Wakefield, Teresa;
Wang, Tza-Huei;
Yang, Samuel

Publication type:

Article

Automated and assisted RNA resonance assignment using NMR chemical shift statistics.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. e172, doi. 10.1093/nar/gkt665

By:

Aeschbacher, Thomas;
Schmidt, Elena;
Blatter, Markus;
Maris, Christophe;
Duss, Olivier;
Allain, Frédéric H.-T.;
Güntert, Peter;
Schubert, Mario

Publication type:

Article

The ubiquitin specific protease USP34 promotes ubiquitin signaling at DNA double-strand breaks.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8572

By:

Sy, Shirley M. H.;
Jiang, Jun;
O, Wai Sum;
Deng, Yiqun;
Huen, Michael S. Y.

Publication type:

Article

Transcriptional regulation of human DNA repair genes following genotoxic stress: trigger mechanisms, inducible responses and genotoxic adaptation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8403, doi. 10.1093/nar/gkt635

By:

Christmann, Markus;
Kaina, Bernd

Publication type:

Article

miRISC recruits decapping factors to miRNA targets to enhance their degradation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8692, doi. 10.1093/nar/gkt619

By:

Nishihara, Tadashi;
Zekri, Latifa;
Braun, Joerg E.;
Izaurralde, Elisa

Publication type:

Article

HnRNP A1 controls a splicing regulatory circuit promoting mesenchymal-to-epithelial transition.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8665, doi. 10.1093/nar/gkt579

By:

Bonomi, Serena;
di Matteo, Anna;
Buratti, Emanuele;
Cabianca, Daphne S.;
Baralle, Francisco E.;
Ghigna, Claudia;
Biamonti, Giuseppe

Publication type:

Article

Conservation of RNA chaperone activity of the human La-related proteins 4, 6 and 7.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8715, doi. 10.1093/nar/gkt649

By:

Hussain, Rawaa H.;
Zawawi, Mariam;
Bayfield, Mark A.

Publication type:

Article

Carboxy terminal modifications of the P0 protein reveal alternative mechanisms of nuclear ribosomal stalk assembly.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8628, doi. 10.1093/nar/gkt637

By:

Francisco-Velilla, Rosario;
Remacha, Miguel;
Ballesta, Juan P.G.

Publication type:

Article

CCAR1 promotes chromatin loading of androgen receptor (AR) transcription complex by stabilizing the association between AR and GATA2.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8526, doi. 10.1093/nar/gkt644

By:

Seo, Woo-Young;
Jeong, Byong Chang;
Yu, Eun Ji;
Kim, Hwa Jin;
Kim, Seok-Hyung;
Lim, Joung Eun;
Kwon, Ghee Young;
Lee, Hyun Moo;
Kim, Jeong Hoon

Publication type:

Article

Transactivation specificity is conserved among p53 family proteins and depends on a response element sequence code.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8637, doi. 10.1093/nar/gkt657

By:

Ciribilli, Yari;
Monti, Paola;
Bisio, Alessandra;
Nguyen, H. Thien;
Ethayathulla, Abdul S.;
Ramos, Ana;
Foggetti, Giorgia;
Menichini, Paola;
Menendez, Daniel;
Resnick, Michael A.;
Viadiu, Hector;
Fronza, Gilberto;
Inga, Alberto

Publication type:

Article

Conformational changes of the phenyl and naphthyl isocyanate-DNA adducts during DNA replication and by minor groove binding molecules.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8581, doi. 10.1093/nar/gkt608

By:

Nakano, Shu-ichi;
Uotani, Yuuki;
Sato, Yuichi;
Oka, Hirohito;
Fujii, Masayuki;
Sugimoto, Naoki

Publication type:

Article

Controlling the stoichiometry and strand polarity of a tetramolecular G-quadruplex structure by using a DNA origami frame.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8738, doi. 10.1093/nar/gkt592

By:

Rajendran, Arivazhagan;
Endo, Masayuki;
Hidaka, Kumi;
Lan Thao Tran, Phong;
Mergny, Jean-Louis;
Sugiyama, Hiroshi

Publication type:

Article

Target recognition, RNA methylation activity and transcriptional regulation of the Dictyostelium discoideum Dnmt2-homologue (DnmA).

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8615, doi. 10.1093/nar/gkt634

By:

Müller, Sara;
Windhof, Indra M.;
Maximov, Vladimir;
Jurkowski, Tomasz;
Jeltsch, Albert;
Förstner, Konrad U.;
Sharma, Cynthia M.;
Gräf, Ralph;
Nellen, Wolfgang

Publication type:

Article

BRCA1 is a key regulator of breast differentiation through activation of Notch signalling with implications for anti-endocrine treatment of breast cancers.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8601, doi. 10.1093/nar/gkt626

By:

Buckley, Niamh E.;
Nic An tSaoir, Caoimhe B.;
Blayney, Jaine K.;
Oram, Lisa C.;
Crawford, Nyree T.;
D’Costa, Zenobia C.;
Quinn, Jennifer E.;
Kennedy, Richard D.;
Harkin, D. Paul;
Mullan, Paul B.

Publication type:

Article

Targeted resequencing of HIV variants by microarray thermodynamics.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. e173, doi. 10.1093/nar/gkt682

By:

Hadiwikarta, Wahyu W.;
Van Dorst, Bieke;
Hollanders, Karen;
Stuyver, Lieven;
Carlon, Enrico;
Hooyberghs, Jef

Publication type:

Article

Modulation of base excision repair of 8-oxoguanine by the nucleotide sequence.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8559, doi. 10.1093/nar/gkt620

By:

Allgayer, Julia;
Kitsera, Nataliya;
von der Lippen, Carina;
Epe, Bernd;
Khobta, Andriy

Publication type:

Article

Dicodon monitoring of protein synthesis (DiCoMPS) reveals levels of synthesis of a viral protein in single cells.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. e177, doi. 10.1093/nar/gkt686

By:

Barhoom, Sima;
Farrell, Ian;
Shai, Ben;
Dahary, Dvir;
Cooperman, Barry S.;
Smilansky, Zeev;
Elroy-Stein, Orna;
Ehrlich, Marcelo

Publication type:

Article

Synthetic tolerance: three noncoding small RNAs, DsrA, ArcZ and RprA, acting supra-additively against acid stress.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8726, doi. 10.1093/nar/gkt651

By:

Gaida, Stefan M.;
Al-Hinai, Mohab A.;
Indurthi, Dinesh C.;
Nicolaou, Sergios A.;
Papoutsakis, Eleftherios T.

Publication type:

Article

A comprehensive gene regulatory network for the diauxic shift in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8452, doi. 10.1093/nar/gkt631

By:

Geistlinger, Ludwig;
Csaba, Gergely;
Dirmeier, Simon;
Küffner, Robert;
Zimmer, Ralf

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 18, p. iii, doi. 10.1093/nar/gks1423
Publication type:: Article

Minimal genome encoding proteins with constrained amino acid repertoire.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8444, doi. 10.1093/nar/gkt610

By:

Tsoy, Olga;
Yurieva, Marina;
Kucharavy, Andrey;
O'Reilly, Mary;
Mushegian, Arcady

Publication type:

Article

Global identification of conserved post-transcriptional regulatory programs in trypanosomatids.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8591, doi. 10.1093/nar/gkt647

By:

Najafabadi, Hamed S.;
Lu, Zhiquan;
MacPherson, Chad;
Mehta, Vaibhav;
Adoue, Véronique;
Pastinen, Tomi;
Salavati, Reza

Publication type:

Article

A competitive regulatory mechanism discriminates between juxtaposed splice sites and pri-miRNA structures.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8680, doi. 10.1093/nar/gkt614

By:

Mattioli, Chiara;
Pianigiani, Giulia;
Pagani, Franco

Publication type:

Article

Solution structure of human P1&bullet;P2 heterodimer provides insights into the role of eukaryotic stalk in recruiting the ribosome-inactivating protein trichosanthin to the ribosome.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8776, doi. 10.1093/nar/gkt636

By:

Lee, Ka-Ming;
Yusa, Kazuyuki;
Chu, Lai-On;
Yu, Conny Wing-Heng;
Oono, Moe;
Miyoshi, Tomohiro;
Ito, Kosuke;
Shaw, Pang-Chui;
Wong, Kam-Bo;
Uchiumi, Toshio

Publication type:

Article

Structural studies of p53 inactivation by DNA-contact mutations and its rescue by suppressor mutations via alternative protein–DNA interactions.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8748, doi. 10.1093/nar/gkt630

By:

Eldar, Amir;
Rozenberg, Haim;
Diskin-Posner, Yael;
Rohs, Remo;
Shakked, Zippora

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 18, p. i, doi. 10.1093/nar/gks1366
Publication type:: Article

Early steps of active DNA demethylation initiated by ROS1 glycosylase require three putative helix-invading residues.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8654, doi. 10.1093/nar/gkt625

By:

Parrilla-Doblas, Jara Teresa;
Ponferrada-Marín, María Isabel;
Roldán-Arjona, Teresa;
Ariza, Rafael R.

Publication type:

Article

Pin1 promotes GR transactivation by enhancing recruitment to target genes.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8515, doi. 10.1093/nar/gkt624

By:

Poolman, Toryn M.;
Farrow, Stuart N.;
Matthews, Laura;
Loudon, Andrew S.;
Ray, David W.

Publication type:

Article

Protein–DNA binding dynamics predict transcriptional response to nutrients in archaea.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8546, doi. 10.1093/nar/gkt659

By:

Todor, Horia;
Sharma, Kriti;
Pittman, Adrianne M. C.;
Schmid, Amy K.

Publication type:

Article

Architecturally diverse proteins converge on an analogous mechanism to inactivate Uracil-DNA glycosylase.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. 8760, doi. 10.1093/nar/gkt633

By:

Cole, Ambrose R.;
Ofer, Sapir;
Ryzhenkova, Ksenia;
Baltulionis, Gediminas;
Hornyak, Peter;
Savva, Renos

Publication type:

Article

In situ visualization of telomere elongation patterns in human cells.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 18, p. e176, doi. 10.1093/nar/gkt689

By:

Diolaiti, Morgan E.;
Cimini, Beth A.;
Kageyama, Robin;
Charles, Florie A.;
Stohr, Bradley A.

Publication type:

Article