Works matching IS 03051048 AND DT 2013 AND VI 41 AND IP 17

Results: 46

Transcription factor binding to Caenorhabditis elegans first introns reveals lack of redundancy with gene promoters.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 153, doi. 10.1093/nar/gkt858

By:

Fuxman Bass, Juan I.;
Tamburino, Alex M.;
Akihiro Mori;
Beittel, Nathan;
Weirauch, Matthew T.;
Reece-Hoyes, John S.;
M. Walhout, Albertha J.

Publication type:

Article

Natural reassignment of CUU and CUA sense codons to alanine in Ashbya mitochondria.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 499, doi. 10.1093/nar/gkt842

By:

Jiqiang Ling;
Daoud, Rachid;
Lajoie, Marc J.;
Church, George M.;
Söll, Dieter;
Lang, B. Franz

Publication type:

Article

Covariation between homeodomain transcription factors and the shape of their DNA binding sites.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 1, doi. 10.1093/nar/gkt862

By:

Dror, Iris;
Tianyin Zhou;
Mandel-Gutfreund, Yael;
Rohs, Remo

Publication type:

Article

Time-dependent bending rigidity and helical twist of DNA by rearrangement of bound HU protein.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8280, doi. 10.1093/nar/gkt593

By:

Kundukad, Binu;
Cong, Piewen;
van der Maarel, Johan R. C.;
Doyle, Patrick S.

Publication type:

Article

Dissecting cancer heterogeneity with a probabilistic genotype-phenotype model.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8011, doi. 10.1093/nar/gkt577

By:

Cho, Dong-Yeon;
Przytycka, Teresa M.

Publication type:

Article

Detecting Alu insertions from high-throughput sequencing data.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. e169, doi. 10.1093/nar/gkt612

By:

David, Matei;
Mustafa, Harun;
Brudno, Michael

Publication type:

Article

Non-FG mediated transport of the large pre-ribosomal subunit through the nuclear pore complex by the mRNA export factor Gle2.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8266, doi. 10.1093/nar/gkt675

By:

Occhipinti, Laura;
Chang, Yiming;
Altvater, Martin;
Menet, Anna M.;
Kemmler, Stefan;
Panse, Vikram G.

Publication type:

Article

VEGF-A mRNA processing, stability and translation: a paradigm for intricate regulation of gene expression at the post-transcriptional level.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 7997, doi. 10.1093/nar/gkt539

By:

Arcondéguy, Tania;
Lacazette, Eric;
Millevoi, Stefania;
Prats, Hervé;
Touriol, Christian

Publication type:

Article

Structural analysis of the yeast Dhh1–Pat1 complex reveals how Dhh1 engages Pat1, Edc3 and RNA in mutually exclusive interactions.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8377, doi. 10.1093/nar/gkt600

By:

Sharif, Humayun;
Ozgur, Sevim;
Sharma, Kundan;
Basquin, Claire;
Urlaub, Henning;
Conti, Elena

Publication type:

Article

Translational sensitivity of the Escherichia coli genome to fluctuating tRNA availability.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8021, doi. 10.1093/nar/gkt602

By:

Wohlgemuth, Sibylle E.;
Gorochowski, Thomas E.;
Roubos, Johannes A.

Publication type:

Article

A multidimensional platform for the purification of non-coding RNA species.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. e168, doi. 10.1093/nar/gkt668

By:

Chionh, Yok Hian;
Ho, Chia-Hua;
Pruksakorn, Dumnoensun;
Ramesh Babu, I.;
Ng, Chee Sheng;
Hia, Fabian;
McBee, Megan E.;
Su, Dan;
Pang, Yan Ling Joy;
Gu, Chen;
Dong, Hongping;
Prestwich, Erin G.;
Shi, Pei-Yong;
Preiser, Peter Rainer;
Alonso, Sylvie;
Dedon, Peter C.

Publication type:

Article

Attachment site recognition and regulation of directionality by the serine integrases.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8341, doi. 10.1093/nar/gkt580

By:

Rutherford, Karen;
Yuan, Peng;
Perry, Kay;
Sharp, Robert;
Van Duyne, Gregory D.

Publication type:

Article

PP1α, PP1β and Wip-1 regulate H4S47 phosphorylation and deposition of histone H3 variant H3.3.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8085, doi. 10.1093/nar/gkt583

By:

Zhang, Hui;
Wang, Zhiquan;
Zhang, Zhiguo

Publication type:

Article

Widespread purifying selection on RNA structure in mammals.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8220, doi. 10.1093/nar/gkt596

By:

Smith, Martin A.;
Gesell, Tanja;
Stadler, Peter F.;
Mattick, John S.

Publication type:

Article

Structure of p53 binding to the BAX response element reveals DNA unwinding and compression to accommodate base-pair insertion.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8368, doi. 10.1093/nar/gkt584

By:

Chen, Yongheng;
Zhang, Xiaojun;
Dantas Machado, Ana Carolina;
Ding, Yuan;
Chen, Zhuchu;
Qin, Peter Z.;
Rohs, Remo;
Chen, Lin

Publication type:

Article

Involvement of Schizosaccharomyces pombe rrp1+ and rrp2+ in the Srs2- and Swi5/Sfr1-dependent pathway in response to DNA damage and replication inhibition.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8196, doi. 10.1093/nar/gkt564

By:

Dziadkowiec, Dorota;
Kramarz, Karol;
Kanik, Karolina;
Wiśniewski, Piotr;
Carr, Antony M.

Publication type:

Article

Graph-based modeling of tandem repeats improves global multiple sequence alignment.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. e162, doi. 10.1093/nar/gkt628

By:

Szalkowski, Adam M.;
Anisimova, Maria

Publication type:

Article

Global ‘bootprinting’ reveals the elastic architecture of the yeast TFIIIB–TFIIIC transcription complex in vivo.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8135, doi. 10.1093/nar/gkt611

By:

Nagarajavel, V.;
Iben, James R.;
Howard, Bruce H.;
Maraia, Richard J.;
Clark, David J.

Publication type:

Article

An efficient strategy for TALEN-mediated genome engineering in Drosophila.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. e163, doi. 10.1093/nar/gkt638

By:

Katsuyama, Tomonori;
Akmammedov, Arslan;
Seimiya, Makiko;
Hess, Samuel C.;
Sievers, Cem;
Paro, Renato

Publication type:

Article

Deciphering the modulation of gene expression by type I and II interferons combining 4sU-tagging, translational arrest and in silico promoter analysis.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8107, doi. 10.1093/nar/gkt589

By:

Trilling, Mirko;
Bellora, Nicolás;
Rutkowski, Andrzej J.;
de Graaf, Miranda;
Dickinson, Paul;
Robertson, Kevin;
Prazeres da Costa, Olivia;
Ghazal, Peter;
Friedel, Caroline C.;
Albà, M. Mar;
Dölken, Lars

Publication type:

Article

Magnetic isotope and magnetic field effects on the DNA synthesis.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8300, doi. 10.1093/nar/gkt537

By:

Buchachenko, Anatoly L.;
Orlov, Alexei P.;
Kuznetsov, Dmitry A.;
Breslavskaya, Natalia N.

Publication type:

Article

Sulfolobus chromatin proteins modulate strand displacement by DNA polymerase B1.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8182, doi. 10.1093/nar/gkt588

By:

Sun, Fei;
Huang, Li

Publication type:

Article

Modification of the RpoS network with a synthetic small RNA.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8332, doi. 10.1093/nar/gkt604

By:

Jin, Ye;
Wu, Jianting;
Li, Yannan;
Cai, Zhiming;
Huang, Jian-Dong

Publication type:

Article

Characterization at nucleotide resolution of the homogeneously staining region sites of insertion in two cancer cell lines.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8210, doi. 10.1093/nar/gkt566

By:

Gibaud, Anne;
Vogt, Nicolas;
Brison, Olivier;
Debatisse, Michelle;
Malfoy, Bernard

Publication type:

Article

DHX34 and NBAS form part of an autoregulatory NMD circuit that regulates endogenous RNA targets in human cells, zebrafish and Caenorhabditis elegans.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8319, doi. 10.1093/nar/gkt585

By:

Longman, Dasa;
Hug, Nele;
Keith, Marianne;
Anastasaki, Corina;
Patton, E. Elizabeth;
Grimes, Graeme;
Cáceres, Javier F.

Publication type:

Article

A genome-wide screen for identifying all regulators of a target gene.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. e164, doi. 10.1093/nar/gkt655

By:

Baptist, Guillaume;
Pinel, Corinne;
Ranquet, Caroline;
Izard, Jérôme;
Ropers, Delphine;
de Jong, Hidde;
Geiselmann, Johannes

Publication type:

Article

TrAp: a tree approach for fingerprinting subclonal tumor composition.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. e165, doi. 10.1093/nar/gkt641

By:

Strino, Francesco;
Parisi, Fabio;
Micsinai, Mariann;
Kluger, Yuval

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 17, p. iii, doi. 10.1093/nar/gks1422
Publication type:: Article

Estrogen receptor α can selectively repress dioxin receptor-mediated gene expression by targeting DNA methylation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8094, doi. 10.1093/nar/gkt595

By:

Marques, Maud;
Laflamme, Liette;
Gaudreau, Luc

Publication type:

Article

A new strategy for gene targeting and functional proteomics using the DT40 cell line.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. e167, doi. 10.1093/nar/gkt650

By:

Orlowska, Kinga P.;
Klosowska, Kamila;
Szczesny, Roman J.;
Cysewski, Dominik;
Krawczyk, Pawel S.;
Dziembowski, Andrzej

Publication type:

Article

Mineralocorticoid receptor interaction with SP1 generates a new response element for pathophysiologically relevant gene expression.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8045, doi. 10.1093/nar/gkt581

By:

Meinel, Sandra;
Ruhs, Stefanie;
Schumann, Katja;
Strätz, Nicole;
Trenkmann, Kay;
Schreier, Barbara;
Grosse, Ivo;
Keilwagen, Jens;
Gekle, Michael;
Grossmann, Claudia

Publication type:

Article

An intronic structure enabled by a long-distance interaction serves as a novel target for splicing correction in spinal muscular atrophy.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8144, doi. 10.1093/nar/gkt609

By:

Singh, Natalia N.;
Lawler, Mariah N.;
Ottesen, Eric W.;
Upreti, Daya;
Kaczynski, Jennifer R.;
Singh, Ravindra N.

Publication type:

Article

Estrogen represses gene expression through reconfiguring chromatin structures.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8061, doi. 10.1093/nar/gkt586

By:

Osmanbeyoglu, Hatice Ulku;
Lu, Kevin N.;
Oesterreich, Steffi;
Day, Roger S.;
Benos, Panayiotis V.;
Coronnello, Claudia;
Lu, Xinghua

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 17, p. i, doi. 10.1093/nar/gks1366
Publication type:: Article

Characterization of PA-N terminal domain of Influenza A polymerase reveals sequence specific RNA cleavage.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8289, doi. 10.1093/nar/gkt603

By:

Datta, Kausiki;
Wolkerstorfer, Andrea;
Szolar, Oliver H. J.;
Cusack, Stephen;
Klumpp, Klaus

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 17, p. ii, doi. 10.1093/nar/gks1398
Publication type:: Article

Using stable MutS dimers and tetramers to quantitatively analyze DNA mismatch recognition and sliding clamp formation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8166, doi. 10.1093/nar/gkt582

By:

Groothuizen, Flora S.;
Fish, Alexander;
Petoukhov, Maxim V.;
Reumer, Annet;
Manelyte, Laura;
Winterwerp, Herrie H. K.;
Marinus, Martin G.;
Lebbink, Joyce H. G.;
Svergun, Dmitri I.;
Friedhoff, Peter;
Sixma, Titia K.

Publication type:

Article

Genomic targets, and histone acetylation and gene expression profiling of neural HDAC inhibition.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8072, doi. 10.1093/nar/gkt590

By:

Lopez-Atalaya, Jose P.;
Ito, Satomi;
Valor, Luis M.;
Benito, Eva;
Barco, Angel

Publication type:

Article

Widespread evidence of cooperative DNA binding by transcription factors in Drosophila development.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8237, doi. 10.1093/nar/gkt598

By:

Kazemian, Majid;
Pham, Hannah;
Wolfe, Scot A.;
Brodsky, Michael H.;
Sinha, Saurabh

Publication type:

Article

Dyskerin depletion increases VEGF mRNA internal ribosome entry site-mediated translation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8308, doi. 10.1093/nar/gkt587

By:

Rocchi, Laura;
Pacilli, Annalisa;
Sethi, Rajni;
Penzo, Marianna;
Schneider, Robert J.;
Treré, Davide;
Brigotti, Maurizio;
Montanaro, Lorenzo

Publication type:

Article

CRISPRmap: an automated classification of repeat conservation in prokaryotic adaptive immune systems.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8034, doi. 10.1093/nar/gkt606

By:

Lange, Sita J.;
Alkhnbashi, Omer S.;
Rose, Dominic;
Will, Sebastian;
Backofen, Rolf

Publication type:

Article

The structure of Escherichia coli ExoIX—implications for DNA binding and catalysis in flap endonucleases.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8357, doi. 10.1093/nar/gkt591

By:

Anstey-Gilbert, Christopher S.;
Hemsworth, Glyn R.;
Flemming, Claudia S.;
Hodskinson, Michael R. G.;
Zhang, Jing;
Sedelnikova, Svetlana E.;
Stillman, Timothy J.;
Sayers, Jon R.;
Artymiuk, Peter J.

Publication type:

Article

Dystrophin rescue by trans-splicing: a strategy for DMD genotypes not eligible for exon skipping approaches.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8391, doi. 10.1093/nar/gkt621

By:

Lorain, Stéphanie;
Peccate, Cécile;
Le Hir, Maëva;
Griffith, Graziella;
Philippi, Susanne;
Précigout, Guillaume;
Mamchaoui, Kamel;
Jollet, Arnaud;
Voit, Thomas;
Garcia, Luis

Publication type:

Article

The Igf2/H19 muscle enhancer is an active transcriptional complex.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8126, doi. 10.1093/nar/gkt597

By:

Eun, Bokkee;
Sampley, Megan L.;
Van Winkle, Matthew T.;
Good, Austin L.;
Kachman, Marika M.;
Pfeifer, Karl

Publication type:

Article

Rationally designed coiled-coil DNA looping peptides control DNA topology.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. 8253, doi. 10.1093/nar/gkt553

By:

Gowetski, Daniel B.;
Kodis, Erin J.;
Kahn, Jason D.

Publication type:

Article

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 17, p. e166, doi. 10.1093/nar/gkt646

By:

Sun, Liang;
Luo, Haitao;
Bu, Dechao;
Zhao, Guoguang;
Yu, Kuntao;
Zhang, Changhai;
Liu, Yuanning;
Chen, Runsheng;
Zhao, Yi

Publication type:

Article