Works matching IS 03051048 AND DT 2013 AND VI 41 AND IP 16

Results: 44

Comet-FISH with strand-specific probes reveals transcription-coupled repair of 8-oxoGuanine in human cells.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7700, doi. 10.1093/nar/gkt524

By:

Guo, Jia;
Hanawalt, Philip C.;
Spivak, Graciela

Publication type:

Article

Has1 regulates consecutive maturation and processing steps for assembly of 60S ribosomal subunits.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7889, doi. 10.1093/nar/gkt545

By:

Dembowski, Jill A.;
Kuo, Benjamin;
Woolford, John L.

Publication type:

Article

An ‘open’ structure of the RecOR complex supports ssDNA binding within the core of the complex.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7972, doi. 10.1093/nar/gkt572

By:

Radzimanowski, Jens;
Dehez, François;
Round, Adam;
Bidon-Chanal, Axel;
McSweeney, Sean;
Timmins, Joanna

Publication type:

Article

Zinc-finger-nucleases mediate specific and efficient excision of HIV-1 proviral DNA from infected and latently infected human T cells.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7771, doi. 10.1093/nar/gkt571

By:

Qu, Xiying;
Wang, Pengfei;
Ding, Donglin;
Li, Lin;
Wang, Haibo;
Ma, Li;
Zhou, Xin;
Liu, Shaohui;
Lin, Shiguan;
Wang, Xiaohui;
Zhang, Gongmin;
Liu, Sijie;
Liu, Lin;
Wang, Jianhua;
Zhang, Feng;
Lu, Daru;
Zhu, Huanzhang

Publication type:

Article

Single molecule quantitation and sequencing of rare translocations using microfluidic nested digital PCR.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. e159, doi. 10.1093/nar/gkt613

By:

Shuga, Joe;
Zeng, Yong;
Novak, Richard;
Lan, Qing;
Tang, Xiaojiang;
Rothman, Nathaniel;
Vermeulen, Roel;
Li, Laiyu;
Hubbard, Alan;
Zhang, Luoping;
Mathies, Richard A.;
Smith, Martyn T.

Publication type:

Article

Loss of heterozygosity preferentially occurs in early replicating regions in cancer genomes.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7615, doi. 10.1093/nar/gkt552

By:

Pedersen, Brent S.;
De, Subhajyoti

Publication type:

Article

Genome-wide hydroxymethylation tested using the HELP-GT assay shows redistribution in cancer.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. e157, doi. 10.1093/nar/gkt601

By:

Bhattacharyya, Sanchari;
Yu, Yiting;
Suzuki, Masako;
Campbell, Nathaniel;
Mazdo, Jozef;
Vasanthakumar, Aparna;
Bhagat, Tushar D.;
Nischal, Sangeeta;
Christopeit, Maximilian;
Parekh, Samir;
Steidl, Ulrich;
Godley, Lucy;
Maitra, Anirban;
Greally, John M.;
Verma, Amit

Publication type:

Article

Silencing subtelomeric VSGs by Trypanosoma brucei RAP1 at the insect stage involves chromatin structure changes.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7673, doi. 10.1093/nar/gkt562

By:

Pandya, Unnati M.;
Sandhu, Ranjodh;
Li, Bibo

Publication type:

Article

Rapid, modular and reliable construction of complex mammalian gene circuits.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. e156, doi. 10.1093/nar/gkt605

By:

Guye, Patrick;
Li, Yinqing;
Wroblewska, Liliana;
Duportet, Xavier;
Weiss, Ron

Publication type:

Article

LHX2 regulates the neural differentiation of human embryonic stem cells via transcriptional modulation of PAX6 and CER1.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7753, doi. 10.1093/nar/gkt567

By:

Hou, Pei-Shan;
Chuang, Ching-Yu;
Kao, Cheng-Fu;
Chou, Shen-Ju;
Stone, Lee;
Ho, Hong-Nerng;
Chien, Chung-Liang;
Kuo, Hung-Chih

Publication type:

Article

Lighting up left-handed Z-DNA: photoluminescent carbon dots induce DNA B to Z transition and perform DNA logic operations.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7987, doi. 10.1093/nar/gkt575

By:

Feng, Lingyan;
Zhao, Andong;
Ren, Jinsong;
Qu, Xiaogang

Publication type:

Article

Identification of active regulatory regions from DNA methylation data.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. e155, doi. 10.1093/nar/gkt599

By:

Burger, Lukas;
Gaidatzis, Dimos;
Schübeler, Dirk;
Stadler, Michael B.

Publication type:

Article

TDP1 repairs nuclear and mitochondrial DNA damage induced by chain-terminating anticancer and antiviral nucleoside analogs.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7793, doi. 10.1093/nar/gkt483

By:

Huang, Shar-yin N.;
Murai, Junko;
Dalla Rosa, Ilaria;
Dexheimer, Thomas S.;
Naumova, Alena;
Gmeiner, William H.;
Pommier, Yves

Publication type:

Article

DNA double-strand–break complexity levels and their possible contributions to the probability for error-prone processing and repair pathway choice.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7589, doi. 10.1093/nar/gkt556

By:

Schipler, Agnes;
Iliakis, George

Publication type:

Article

Novel approach for selecting the best predictor for identifying the binding sites in DNA binding proteins.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7606, doi. 10.1093/nar/gkt544

By:

Nagarajan, R.;
Ahmad, Shandar;
Michael Gromiha, M.

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 16, p. iii, doi. 10.1093/nar/gks1421
Publication type:: Article

Probing DNA clamps with single-molecule force spectroscopy.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7804, doi. 10.1093/nar/gkt487

By:

Wang, Lin;
Xu, Xiaojun;
Kumar, Ravindra;
Maiti, Buddhadev;
Liu, C. Tony;
Ivanov, Ivaylo;
Lee, Tae-Hee;
Benkovic, Stephen J.

Publication type:

Article

Molecular mechanism of sequence-dependent stability of RecA filament.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7738, doi. 10.1093/nar/gkt570

By:

Kim, Sung Hyun;
Joo, Chirlmin;
Ha, Taekjip;
Kim, Doseok

Publication type:

Article

DNA motif elucidation using belief propagation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. e153, doi. 10.1093/nar/gkt574

By:

Wong, Ka-Chun;
Chan, Tak-Ming;
Peng, Chengbin;
Li, Yue;
Zhang, Zhaolei

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 16, p. i, doi. 10.1093/nar/gks1366
Publication type:: Article

The eIF2α/ATF4 pathway is essential for stress-induced autophagy gene expression.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7683, doi. 10.1093/nar/gkt563

By:

B’chir, Wafa;
Maurin, Anne-Catherine;
Carraro, Valérie;
Averous, Julien;
Jousse, Céline;
Muranishi, Yuki;
Parry, Laurent;
Stepien, Georges;
Fafournoux, Pierre;
Bruhat, Alain

Publication type:

Article

Nuclear CaMKII enhances histone H3 phosphorylation and remodels chromatin during cardiac hypertrophy.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7656, doi. 10.1093/nar/gkt500

By:

Awad, Salma;
Kunhi, Muhammad;
Little, Gillian H.;
Bai, Yan;
An, Woojin;
Bers, Donald;
Kedes, Larry;
Poizat, Coralie

Publication type:

Article

Arpeggio: harmonic compression of ChIP-seq data reveals protein-chromatin interaction signatures.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. e161, doi. 10.1093/nar/gkt627

By:

Stanton, Kelly Patrick;
Parisi, Fabio;
Strino, Francesco;
Rabin, Neta;
Asp, Patrik;
Kluger, Yuval

Publication type:

Article

A versatile microsatellite instability reporter system in human cells.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. e158, doi. 10.1093/nar/gkt615

By:

Koole, Wouter;
Schäfer, Henning S.;
Agami, Reuven;
van Haaften, Gijs;
Tijsterman, Marcel

Publication type:

Article

Structural insight into negative DNA supercoiling by DNA gyrase, a bacterial type 2A DNA topoisomerase.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7815, doi. 10.1093/nar/gkt560

By:

Papillon, Julie;
Ménétret, Jean-François;
Batisse, Claire;
Hélye, Reynald;
Schultz, Patrick;
Potier, Noëlle;
Lamour, Valérie

Publication type:

Article

Tracking a refined eIF4E-binding motif reveals Angel1 as a new partner of eIF4E.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7783, doi. 10.1093/nar/gkt569

By:

Gosselin, Pauline;
Martineau, Yvan;
Morales, Julia;
Czjzek, Mirjam;
Glippa, Virginie;
Gauffeny, Isabelle;
Morin, Emmanuelle;
Le Corguillé, Gildas;
Pyronnet, Stephane;
Cormier, Patrick;
Cosson, Bertrand

Publication type:

Article

Hepatitis C virus 3′UTR regulates viral translation through direct interactions with the host translation machinery.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7861, doi. 10.1093/nar/gkt543

By:

Bai, Yun;
Zhou, Kaihong;
Doudna, Jennifer A.

Publication type:

Article

Carcinogenic adducts induce distinct DNA polymerase binding orientations.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7843, doi. 10.1093/nar/gkt554

By:

Vrtis, Kyle B.;
Markiewicz, Radoslaw P.;
Romano, Louis J.;
Rueda, David

Publication type:

Article

MiST: A new approach to variant detection in deep sequencing datasets.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. e154, doi. 10.1093/nar/gkt551

By:

Subramanian, Sailakshmi;
Di Pierro, Valentina;
Shah, Hardik;
Jayaprakash, Anitha D.;
Weisberger, Ian;
Shim, Jaehee;
George, Ajish;
Gelb, Bruce D.;
Sachidanandam, Ravi

Publication type:

Article

Depletion of Uhrf1 inhibits chromosomal DNA replication in Xenopus egg extracts.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7725, doi. 10.1093/nar/gkt549

By:

Taylor, Elaine M.;
Bonsu, Nicola M.;
Price, R. Jordan;
Lindsay, Howard D.

Publication type:

Article

Conservation of mRNA secondary structures may filter out mutations in Escherichia coli evolution.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7854, doi. 10.1093/nar/gkt507

By:

Chursov, Andrey;
Frishman, Dmitrij;
Shneider, Alexander

Publication type:

Article

Computational identification of novel biochemical systems involved in oxidation, glycosylation and other complex modifications of bases in DNA.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7635, doi. 10.1093/nar/gkt573

By:

Iyer, Lakshminarayan M.;
Zhang, Dapeng;
Maxwell Burroughs, A.;
Aravind, L.

Publication type:

Article

Structural basis for S-adenosylmethionine binding and methyltransferase activity by mitochondrial transcription factor B1.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7947, doi. 10.1093/nar/gkt547

By:

Guja, Kip E.;
Venkataraman, Krithika;
Yakubovskaya, Elena;
Shi, Hui;
Mejia, Edison;
Hambardjieva, Elena;
Karzai, A. Wali;
Garcia-Diaz, Miguel

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 16, p. ii, doi. 10.1093/nar/gks1397
Publication type:: Article

A new telomerase RNA element that is critical for telomere elongation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7713, doi. 10.1093/nar/gkt514

By:

Laterreur, Nancy;
Eschbach, Sébastien H.;
Lafontaine, Daniel A.;
Wellinger, Raymund J.

Publication type:

Article

Polyethylene glycol binding alters human telomere G-quadruplex structure by conformational selection.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7934, doi. 10.1093/nar/gkt440

By:

Buscaglia, Robert;
Miller, M. Clarke;
Dean, William L.;
Gray, Robert D.;
Lane, Andrew N.;
Trent, John O.;
Chaires, Jonathan B.

Publication type:

Article

Clusters of microRNAs emerge by new hairpins in existing transcripts.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7745, doi. 10.1093/nar/gkt534

By:

Marco, Antonio;
Ninova, Maria;
Ronshaugen, Matthew;
Griffiths-Jones, Sam

Publication type:

Article

The RNA helicase Ddx5/p68 binds to hUpf3 and enhances NMD of Ddx17/p72 and Smg5 mRNA.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7875, doi. 10.1093/nar/gkt538

By:

Geißler, Verena;
Altmeyer, Simone;
Stein, Benjamin;
Uhlmann-Schiffler, Heike;
Stahl, Hans

Publication type:

Article

DBSI: DNA-binding site identifier.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. e160, doi. 10.1093/nar/gkt617

By:

Zhu, Xiaolei;
Ericksen, Spencer S.;
Mitchell, Julie C.

Publication type:

Article

The tRNA recognition mechanism of the minimalist SPOUT methyltransferase, TrmL.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7828, doi. 10.1093/nar/gkt568

By:

Liu, Ru-Juan;
Zhou, Mi;
Fang, Zhi-Peng;
Wang, Meng;
Zhou, Xiao-Long;
Wang, En-Duo

Publication type:

Article

An evolutionary conserved pattern of 18S rRNA sequence complementarity to mRNA 5′ UTRs and its implications for eukaryotic gene translation regulation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7625, doi. 10.1093/nar/gkt548

By:

Pánek, Josef;
Kolář, Michal;
Vohradský, Jiří;
Shivaya Valášek, Leoš

Publication type:

Article

miR-195 competes with HuR to modulate stim1 mRNA stability and regulate cell migration.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7905, doi. 10.1093/nar/gkt565

By:

Zhuang, Ran;
Rao, Jaladanki N.;
Zou, Tongtong;
Liu, Lan;
Xiao, Lan;
Cao, Shan;
Hansraj, Natasha Z.;
Gorospe, Myriam;
Wang, Jian-Ying

Publication type:

Article

Structural and biochemical studies of SLIP1–SLBP identify DBP5 and eIF3g as SLIP1-binding proteins.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7960, doi. 10.1093/nar/gkt558

By:

von Moeller, Holger;
Lerner, Rachel;
Ricciardi, Adele;
Basquin, Claire;
Marzluff, William F.;
Conti, Elena

Publication type:

Article

Peptide-binding dependent conformational changes regulate the transcriptional activity of the quorum-sensor NprR.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 16, p. 7920, doi. 10.1093/nar/gkt546

By:

Zouhir, Samira;
Perchat, Stéphane;
Nicaise, Magali;
Perez, Javier;
Guimaraes, Beatriz;
Lereclus, Didier;
Nessler, Sylvie

Publication type:

Article